| Literature DB >> 21523087 |
Tao Wu1, Kai Wang, Peng Jiang, Hong-Jun Zhu.
Abstract
In the title compound, C(27)H(23)N(3)O·H(2)O, the benzimidazole ring system has an r.m.s. deviation of 0.0071 Å and makes dihedral angles of 34.51 (2), 55.22 (3) and 41.05 (5)° with the central and N-bonded phenyl rings, respectively. In the crystal, the water mol-ecular is connected to the organic mol-ecule by inter-molecular O-H⋯N hydrogen bonds. Weak inter-molecular C-H⋯O hydrogen bonds also occur.Entities:
Year: 2011 PMID: 21523087 PMCID: PMC3051646 DOI: 10.1107/S160053681100119X
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C27H23N3·H2O | |
| Monoclinic, | Mo |
| Hall symbol: -P 2ybc | Cell parameters from 25 reflections |
| θ = 10–14° | |
| µ = 0.08 mm−1 | |
| β = 97.81 (3)° | Block, colorless |
| 0.30 × 0.20 × 0.10 mm | |
| Enraf–Nonius CAD-4 diffractometer | 2487 reflections with |
| Radiation source: fine-focus sealed tube | |
| graphite | θmax = 25.4°, θmin = 1.7° |
| ω/2θ scans | |
| Absorption correction: ψ scan (North | |
| 4223 measured reflections | 3 standard reflections every 200 reflections |
| 4024 independent reflections | intensity decay: 1% |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H-atom parameters constrained | |
| (Δ/σ)max < 0.001 | |
| 4024 reflections | Δρmax = 0.18 e Å−3 |
| 281 parameters | Δρmin = −0.26 e Å−3 |
| 0 restraints | Extinction correction: |
| Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.0093 (17) |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| N1 | 0.12417 (17) | 0.8084 (2) | −0.08205 (12) | 0.0535 (6) | |
| C1 | 0.0167 (2) | 1.0299 (3) | −0.09280 (14) | 0.0502 (7) | |
| H1A | −0.0468 | 0.9764 | −0.0906 | 0.060* | |
| N2 | 0.53509 (16) | 0.6320 (2) | 0.14215 (10) | 0.0457 (5) | |
| C2 | 0.0102 (2) | 1.1782 (3) | −0.10031 (16) | 0.0599 (8) | |
| H2B | −0.0578 | 1.2238 | −0.1038 | 0.072* | |
| N3 | 0.47737 (16) | 0.4037 (2) | 0.12179 (11) | 0.0435 (5) | |
| C3 | 0.1033 (3) | 1.2582 (3) | −0.10260 (16) | 0.0622 (8) | |
| H3A | 0.0986 | 1.3580 | −0.1072 | 0.075* | |
| C4 | 0.2031 (2) | 1.1914 (3) | −0.09818 (15) | 0.0567 (7) | |
| H4A | 0.2664 | 1.2461 | −0.0993 | 0.068* | |
| C5 | 0.2108 (2) | 1.0429 (3) | −0.09211 (14) | 0.0522 (7) | |
| H5A | 0.2787 | 0.9977 | −0.0905 | 0.063* | |
| C6 | 0.1169 (2) | 0.9614 (3) | −0.08850 (13) | 0.0442 (6) | |
| C7 | 0.03574 (19) | 0.7225 (3) | −0.11420 (13) | 0.0419 (6) | |
| C8 | −0.0220 (2) | 0.6349 (3) | −0.07465 (15) | 0.0514 (7) | |
| H8A | −0.0017 | 0.6299 | −0.0269 | 0.062* | |
| C9 | −0.1095 (2) | 0.5549 (3) | −0.10554 (18) | 0.0625 (8) | |
| H9A | −0.1477 | 0.4955 | −0.0786 | 0.075* | |
| C10 | −0.1405 (3) | 0.5620 (3) | −0.1750 (2) | 0.0737 (10) | |
| H10A | −0.2004 | 0.5088 | −0.1956 | 0.088* | |
| C11 | −0.0834 (3) | 0.6476 (4) | −0.21467 (17) | 0.0733 (9) | |
| H11A | −0.1042 | 0.6516 | −0.2624 | 0.088* | |
| C12 | 0.0048 (2) | 0.7282 (3) | −0.18469 (14) | 0.0609 (8) | |
| H12A | 0.0433 | 0.7861 | −0.2121 | 0.073* | |
| C13 | 0.20766 (19) | 0.7440 (3) | −0.03508 (13) | 0.0431 (6) | |
| C14 | 0.2497 (2) | 0.8104 (3) | 0.02666 (13) | 0.0461 (6) | |
| H14A | 0.2234 | 0.9005 | 0.0375 | 0.055* | |
| C15 | 0.3298 (2) | 0.7442 (3) | 0.07189 (13) | 0.0443 (6) | |
| H15A | 0.3578 | 0.7910 | 0.1128 | 0.053* | |
| C16 | 0.37033 (19) | 0.6077 (3) | 0.05776 (13) | 0.0408 (6) | |
| C17 | 0.32912 (19) | 0.5432 (3) | −0.00436 (13) | 0.0435 (6) | |
| H17A | 0.3560 | 0.4536 | −0.0154 | 0.052* | |
| C18 | 0.2488 (2) | 0.6091 (3) | −0.05033 (13) | 0.0446 (6) | |
| H18A | 0.2220 | 0.5633 | −0.0917 | 0.053* | |
| C19 | 0.4598 (2) | 0.5481 (3) | 0.10699 (13) | 0.0419 (6) | |
| C20 | 0.6054 (2) | 0.5389 (3) | 0.18193 (13) | 0.0457 (6) | |
| C21 | 0.6991 (2) | 0.5681 (3) | 0.22815 (14) | 0.0560 (7) | |
| H21A | 0.7225 | 0.6625 | 0.2371 | 0.067* | |
| C22 | 0.7562 (3) | 0.4543 (4) | 0.26021 (16) | 0.0706 (9) | |
| H22A | 0.8196 | 0.4716 | 0.2910 | 0.085* | |
| C23 | 0.7204 (3) | 0.3122 (3) | 0.24720 (16) | 0.0681 (9) | |
| H23A | 0.7611 | 0.2374 | 0.2697 | 0.082* | |
| C24 | 0.6278 (2) | 0.2793 (3) | 0.20264 (15) | 0.0587 (8) | |
| H24A | 0.6040 | 0.1847 | 0.1947 | 0.070* | |
| C25 | 0.5710 (2) | 0.3962 (3) | 0.16973 (13) | 0.0443 (6) | |
| C26 | 0.4069 (2) | 0.2785 (3) | 0.10055 (15) | 0.0556 (7) | |
| H26A | 0.3350 | 0.3125 | 0.0803 | 0.067* | |
| H26B | 0.3975 | 0.2221 | 0.1413 | 0.067* | |
| C27 | 0.4534 (3) | 0.1826 (3) | 0.04887 (17) | 0.0717 (9) | |
| H27A | 0.4046 | 0.1029 | 0.0370 | 0.108* | |
| H27B | 0.5241 | 0.1471 | 0.0689 | 0.108* | |
| H27C | 0.4611 | 0.2371 | 0.0079 | 0.108* | |
| OW | 0.5578 (2) | 0.9300 (3) | 0.18768 (15) | 0.1158 (10) | |
| HWB | 0.5151 | 0.8673 | 0.2015 | 0.139* | |
| HWA | 0.5919 | 0.8888 | 0.1579 | 0.139* |
| N1 | 0.0452 (12) | 0.0373 (12) | 0.0720 (15) | −0.0054 (10) | −0.0136 (11) | 0.0103 (11) |
| C1 | 0.0447 (15) | 0.0436 (16) | 0.0618 (18) | −0.0048 (12) | 0.0060 (13) | −0.0013 (13) |
| N2 | 0.0466 (12) | 0.0395 (12) | 0.0487 (13) | 0.0007 (10) | −0.0017 (10) | 0.0037 (10) |
| C2 | 0.0593 (18) | 0.0438 (17) | 0.076 (2) | 0.0047 (14) | 0.0084 (15) | −0.0064 (14) |
| N3 | 0.0456 (12) | 0.0314 (11) | 0.0524 (13) | −0.0009 (9) | 0.0030 (10) | 0.0064 (9) |
| C3 | 0.076 (2) | 0.0335 (15) | 0.076 (2) | −0.0049 (15) | 0.0059 (17) | −0.0042 (14) |
| C4 | 0.0601 (18) | 0.0439 (17) | 0.0637 (18) | −0.0169 (14) | −0.0005 (14) | 0.0051 (14) |
| C5 | 0.0432 (14) | 0.0482 (16) | 0.0631 (18) | −0.0050 (13) | −0.0007 (13) | 0.0064 (14) |
| C6 | 0.0455 (14) | 0.0373 (14) | 0.0476 (15) | −0.0025 (12) | −0.0012 (12) | 0.0054 (12) |
| C7 | 0.0381 (13) | 0.0333 (13) | 0.0520 (16) | −0.0002 (11) | −0.0019 (12) | 0.0013 (11) |
| C8 | 0.0511 (15) | 0.0469 (16) | 0.0554 (17) | −0.0007 (13) | 0.0041 (13) | 0.0050 (13) |
| C9 | 0.0478 (16) | 0.0487 (17) | 0.090 (2) | −0.0096 (14) | 0.0067 (16) | 0.0052 (16) |
| C10 | 0.0583 (19) | 0.0508 (19) | 0.104 (3) | −0.0061 (16) | −0.0186 (19) | −0.0158 (19) |
| C11 | 0.085 (2) | 0.071 (2) | 0.0557 (19) | 0.004 (2) | −0.0171 (18) | −0.0122 (17) |
| C12 | 0.0669 (19) | 0.0648 (19) | 0.0495 (17) | −0.0021 (16) | 0.0026 (15) | 0.0044 (14) |
| C13 | 0.0378 (13) | 0.0357 (14) | 0.0544 (16) | −0.0037 (11) | 0.0013 (12) | 0.0076 (12) |
| C14 | 0.0448 (14) | 0.0386 (14) | 0.0537 (16) | 0.0036 (12) | 0.0025 (12) | −0.0012 (12) |
| C15 | 0.0458 (14) | 0.0399 (14) | 0.0458 (15) | −0.0016 (12) | 0.0009 (12) | −0.0031 (11) |
| C16 | 0.0377 (13) | 0.0367 (14) | 0.0476 (15) | −0.0032 (11) | 0.0040 (11) | 0.0025 (11) |
| C17 | 0.0415 (13) | 0.0332 (13) | 0.0560 (16) | −0.0002 (11) | 0.0073 (12) | −0.0011 (12) |
| C18 | 0.0450 (14) | 0.0381 (14) | 0.0487 (15) | −0.0049 (12) | −0.0003 (12) | −0.0016 (12) |
| C19 | 0.0430 (13) | 0.0360 (14) | 0.0469 (14) | −0.0002 (12) | 0.0063 (11) | 0.0028 (12) |
| C20 | 0.0463 (15) | 0.0440 (15) | 0.0460 (15) | 0.0011 (12) | 0.0041 (12) | 0.0036 (12) |
| C21 | 0.0570 (17) | 0.0506 (17) | 0.0563 (17) | −0.0022 (14) | −0.0067 (14) | 0.0013 (14) |
| C22 | 0.0651 (19) | 0.076 (2) | 0.064 (2) | 0.0051 (18) | −0.0142 (16) | 0.0095 (17) |
| C23 | 0.072 (2) | 0.061 (2) | 0.067 (2) | 0.0176 (17) | −0.0079 (17) | 0.0206 (16) |
| C24 | 0.0676 (19) | 0.0433 (16) | 0.0645 (19) | 0.0062 (14) | 0.0067 (16) | 0.0122 (14) |
| C25 | 0.0469 (14) | 0.0404 (14) | 0.0458 (15) | 0.0033 (12) | 0.0072 (12) | 0.0076 (12) |
| C26 | 0.0544 (16) | 0.0392 (15) | 0.0715 (19) | −0.0095 (13) | 0.0032 (14) | 0.0105 (14) |
| C27 | 0.077 (2) | 0.0437 (17) | 0.091 (2) | −0.0017 (16) | −0.0020 (18) | −0.0060 (16) |
| OW | 0.154 (2) | 0.0616 (15) | 0.146 (2) | −0.0265 (16) | 0.073 (2) | −0.0184 (15) |
| N1—C13 | 1.410 (3) | C13—C14 | 1.386 (4) |
| N1—C7 | 1.421 (3) | C13—C18 | 1.396 (3) |
| N1—C6 | 1.426 (3) | C14—C15 | 1.373 (3) |
| C1—C6 | 1.377 (3) | C14—H14A | 0.9300 |
| C1—C2 | 1.383 (4) | C15—C16 | 1.401 (3) |
| C1—H1A | 0.9300 | C15—H15A | 0.9300 |
| N2—C19 | 1.324 (3) | C16—C17 | 1.382 (3) |
| N2—C20 | 1.381 (3) | C16—C19 | 1.464 (3) |
| C2—C3 | 1.369 (4) | C17—C18 | 1.380 (3) |
| C2—H2B | 0.9300 | C17—H17A | 0.9300 |
| N3—C19 | 1.380 (3) | C18—H18A | 0.9300 |
| N3—C25 | 1.381 (3) | C20—C21 | 1.388 (3) |
| N3—C26 | 1.473 (3) | C20—C25 | 1.398 (4) |
| C3—C4 | 1.365 (4) | C21—C22 | 1.369 (4) |
| C3—H3A | 0.9300 | C21—H21A | 0.9300 |
| C4—C5 | 1.384 (4) | C22—C23 | 1.401 (4) |
| C4—H4A | 0.9300 | C22—H22A | 0.9300 |
| C5—C6 | 1.388 (3) | C23—C24 | 1.368 (4) |
| C5—H5A | 0.9300 | C23—H23A | 0.9300 |
| C7—C12 | 1.374 (4) | C24—C25 | 1.397 (3) |
| C7—C8 | 1.380 (3) | C24—H24A | 0.9300 |
| C8—C9 | 1.375 (4) | C26—C27 | 1.511 (4) |
| C8—H8A | 0.9300 | C26—H26A | 0.9700 |
| C9—C10 | 1.356 (5) | C26—H26B | 0.9700 |
| C9—H9A | 0.9300 | C27—H27A | 0.9600 |
| C10—C11 | 1.365 (5) | C27—H27B | 0.9600 |
| C10—H10A | 0.9300 | C27—H27C | 0.9600 |
| C11—C12 | 1.378 (4) | OW—HWB | 0.8499 |
| C11—H11A | 0.9300 | OW—HWA | 0.8501 |
| C12—H12A | 0.9300 | ||
| C13—N1—C7 | 119.5 (2) | C13—C14—H14A | 119.7 |
| C13—N1—C6 | 120.7 (2) | C14—C15—C16 | 121.4 (2) |
| C7—N1—C6 | 118.9 (2) | C14—C15—H15A | 119.3 |
| C6—C1—C2 | 120.2 (3) | C16—C15—H15A | 119.3 |
| C6—C1—H1A | 119.9 | C17—C16—C15 | 117.7 (2) |
| C2—C1—H1A | 119.9 | C17—C16—C19 | 124.3 (2) |
| C19—N2—C20 | 105.2 (2) | C15—C16—C19 | 117.8 (2) |
| C3—C2—C1 | 120.4 (3) | C18—C17—C16 | 121.4 (2) |
| C3—C2—H2B | 119.8 | C18—C17—H17A | 119.3 |
| C1—C2—H2B | 119.8 | C16—C17—H17A | 119.3 |
| C19—N3—C25 | 106.37 (19) | C17—C18—C13 | 120.4 (2) |
| C19—N3—C26 | 129.6 (2) | C17—C18—H18A | 119.8 |
| C25—N3—C26 | 123.6 (2) | C13—C18—H18A | 119.8 |
| C4—C3—C2 | 119.9 (3) | N2—C19—N3 | 112.5 (2) |
| C4—C3—H3A | 120.0 | N2—C19—C16 | 121.7 (2) |
| C2—C3—H3A | 120.0 | N3—C19—C16 | 125.7 (2) |
| C3—C4—C5 | 120.4 (3) | N2—C20—C21 | 129.9 (2) |
| C3—C4—H4A | 119.8 | N2—C20—C25 | 110.1 (2) |
| C5—C4—H4A | 119.8 | C21—C20—C25 | 120.0 (2) |
| C4—C5—C6 | 119.9 (3) | C22—C21—C20 | 118.2 (3) |
| C4—C5—H5A | 120.1 | C22—C21—H21A | 120.9 |
| C6—C5—H5A | 120.1 | C20—C21—H21A | 120.9 |
| C1—C6—C5 | 119.2 (2) | C21—C22—C23 | 120.9 (3) |
| C1—C6—N1 | 120.6 (2) | C21—C22—H22A | 119.6 |
| C5—C6—N1 | 120.2 (2) | C23—C22—H22A | 119.6 |
| C12—C7—C8 | 119.1 (2) | C24—C23—C22 | 122.6 (3) |
| C12—C7—N1 | 120.6 (2) | C24—C23—H23A | 118.7 |
| C8—C7—N1 | 120.3 (2) | C22—C23—H23A | 118.7 |
| C9—C8—C7 | 120.3 (3) | C23—C24—C25 | 116.0 (3) |
| C9—C8—H8A | 119.9 | C23—C24—H24A | 122.0 |
| C7—C8—H8A | 119.9 | C25—C24—H24A | 122.0 |
| C10—C9—C8 | 120.4 (3) | N3—C25—C24 | 131.8 (2) |
| C10—C9—H9A | 119.8 | N3—C25—C20 | 105.8 (2) |
| C8—C9—H9A | 119.8 | C24—C25—C20 | 122.4 (2) |
| C9—C10—C11 | 119.8 (3) | N3—C26—C27 | 112.9 (2) |
| C9—C10—H10A | 120.1 | N3—C26—H26A | 109.0 |
| C11—C10—H10A | 120.1 | C27—C26—H26A | 109.0 |
| C10—C11—C12 | 120.6 (3) | N3—C26—H26B | 109.0 |
| C10—C11—H11A | 119.7 | C27—C26—H26B | 109.0 |
| C12—C11—H11A | 119.7 | H26A—C26—H26B | 107.8 |
| C7—C12—C11 | 119.8 (3) | C26—C27—H27A | 109.5 |
| C7—C12—H12A | 120.1 | C26—C27—H27B | 109.5 |
| C11—C12—H12A | 120.1 | H27A—C27—H27B | 109.5 |
| C14—C13—C18 | 118.6 (2) | C26—C27—H27C | 109.5 |
| C14—C13—N1 | 121.8 (2) | H27A—C27—H27C | 109.5 |
| C18—C13—N1 | 119.6 (2) | H27B—C27—H27C | 109.5 |
| C15—C14—C13 | 120.5 (2) | HWB—OW—HWA | 106.9 |
| C15—C14—H14A | 119.7 | ||
| C6—C1—C2—C3 | −0.9 (4) | C19—C16—C17—C18 | −176.2 (2) |
| C1—C2—C3—C4 | 0.7 (5) | C16—C17—C18—C13 | 0.4 (4) |
| C2—C3—C4—C5 | 0.7 (4) | C14—C13—C18—C17 | 0.5 (4) |
| C3—C4—C5—C6 | −1.8 (4) | N1—C13—C18—C17 | −178.8 (2) |
| C2—C1—C6—C5 | −0.3 (4) | C20—N2—C19—N3 | 0.0 (3) |
| C2—C1—C6—N1 | −178.8 (3) | C20—N2—C19—C16 | −179.3 (2) |
| C4—C5—C6—C1 | 1.6 (4) | C25—N3—C19—N2 | −0.2 (3) |
| C4—C5—C6—N1 | −179.8 (3) | C26—N3—C19—N2 | 172.0 (2) |
| C13—N1—C6—C1 | −136.8 (3) | C25—N3—C19—C16 | 179.0 (2) |
| C7—N1—C6—C1 | 32.2 (4) | C26—N3—C19—C16 | −8.7 (4) |
| C13—N1—C6—C5 | 44.7 (4) | C17—C16—C19—N2 | 142.4 (3) |
| C7—N1—C6—C5 | −146.3 (2) | C15—C16—C19—N2 | −32.3 (3) |
| C13—N1—C7—C12 | −130.9 (3) | C17—C16—C19—N3 | −36.8 (4) |
| C6—N1—C7—C12 | 59.9 (3) | C15—C16—C19—N3 | 148.5 (2) |
| C13—N1—C7—C8 | 50.7 (3) | C19—N2—C20—C21 | 179.5 (3) |
| C6—N1—C7—C8 | −118.5 (3) | C19—N2—C20—C25 | 0.2 (3) |
| C12—C7—C8—C9 | −0.2 (4) | N2—C20—C21—C22 | −178.5 (3) |
| N1—C7—C8—C9 | 178.2 (2) | C25—C20—C21—C22 | 0.6 (4) |
| C7—C8—C9—C10 | −0.5 (4) | C20—C21—C22—C23 | −0.6 (5) |
| C8—C9—C10—C11 | 1.0 (5) | C21—C22—C23—C24 | −0.2 (5) |
| C9—C10—C11—C12 | −0.7 (5) | C22—C23—C24—C25 | 0.8 (5) |
| C8—C7—C12—C11 | 0.5 (4) | C19—N3—C25—C24 | −179.4 (3) |
| N1—C7—C12—C11 | −177.9 (3) | C26—N3—C25—C24 | 7.8 (4) |
| C10—C11—C12—C7 | −0.1 (5) | C19—N3—C25—C20 | 0.4 (3) |
| C7—N1—C13—C14 | −137.3 (3) | C26—N3—C25—C20 | −172.5 (2) |
| C6—N1—C13—C14 | 31.7 (4) | C23—C24—C25—N3 | 178.9 (3) |
| C7—N1—C13—C18 | 42.1 (3) | C23—C24—C25—C20 | −0.8 (4) |
| C6—N1—C13—C18 | −149.0 (2) | N2—C20—C25—N3 | −0.4 (3) |
| C18—C13—C14—C15 | −0.3 (4) | C21—C20—C25—N3 | −179.7 (2) |
| N1—C13—C14—C15 | 179.0 (2) | N2—C20—C25—C24 | 179.4 (2) |
| C13—C14—C15—C16 | −0.9 (4) | C21—C20—C25—C24 | 0.0 (4) |
| C14—C15—C16—C17 | 1.8 (4) | C19—N3—C26—C27 | 110.2 (3) |
| C14—C15—C16—C19 | 176.8 (2) | C25—N3—C26—C27 | −78.7 (3) |
| C15—C16—C17—C18 | −1.6 (4) |
| H··· | ||||
| OW—HWB···N2 | 0.85 | 2.50 | 2.903 (3) | 110 |
| OW—HWA···N2 | 0.85 | 2.49 | 2.903 (3) | 111 |
| C24—H24A···OWi | 0.93 | 2.43 | 3.352 (4) | 173 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| O | 0.85 | 2.50 | 2.903 (3) | 110 |
| O | 0.85 | 2.49 | 2.903 (3) | 111 |
| C24—H24 | 0.93 | 2.43 | 3.352 (4) | 173 |
Symmetry code: (i) .