Literature DB >> 21523084

1,3-Bis{[5-(pyridin-2-yl)-1,3,4-oxadiazol-2-yl]sulfan-yl}propan-2-one.

Chao-Hui Xia, Chun-Bo Mao, Ben-Lai Wu.   

Abstract

In the distorted W-shaped mol-ecule of the title compound, C(17)H(12)N(6)O(3)S(2), a twofold axis passes through the carbonyl group. The mol-ecules stack in the crystal through π-π inter-actions [centroid-centroid distance = 3.883 Å] and weak C-H⋯N hydrogen-bonding inter-actions, forming a three-dimensional architecture.

Entities:  

Year:  2011        PMID: 21523084      PMCID: PMC3051430          DOI: 10.1107/S1600536811001140

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the use of oxadiazole-containing compounds with symmetrical or asymmetrical structures in coordination chemistry, see: Du et al. (2006 ▶); Fang et al. (2002 ▶); Wu et al. (2010 ▶); Ye et al. (2007 ▶). For a similar propanone-bridged dithio­ether compound, see: Wu et al. (2005 ▶).

Experimental

Crystal data

C17H12N6O3S2 M = 412.45 Monoclinic, a = 14.266 (3) Å b = 7.8342 (16) Å c = 16.703 (3) Å β = 100.25 (3)° V = 1837.0 (6) Å3 Z = 4 Mo Kα radiation μ = 0.32 mm−1 T = 293 K 0.20 × 0.20 × 0.20 mm

Data collection

Siemens SMART CCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.913, T max = 1.000 8929 measured reflections 1607 independent reflections 1448 reflections with I > 2σ(I) R int = 0.050

Refinement

R[F 2 > 2σ(F 2)] = 0.076 wR(F 2) = 0.134 S = 1.24 1607 reflections 128 parameters H-atom parameters constrained Δρmax = 0.33 e Å−3 Δρmin = −0.21 e Å−3 Data collection: SMART (Siemens, 1996 ▶); cell refinement: SAINT (Siemens, 1994 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536811001140/hg2787sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536811001140/hg2787Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C17H12N6O3S2F(000) = 848
Mr = 412.45Dx = 1.491 Mg m3
Monoclinic, C2/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -C 2ycCell parameters from 2643 reflections
a = 14.266 (3) Åθ = 2.5–29.1°
b = 7.8342 (16) ŵ = 0.32 mm1
c = 16.703 (3) ÅT = 293 K
β = 100.25 (3)°Block, yellow
V = 1837.0 (6) Å30.20 × 0.20 × 0.20 mm
Z = 4
Siemens SMART CCD diffractometer1607 independent reflections
Radiation source: fine-focus sealed tube1448 reflections with I > 2σ(I)
graphiteRint = 0.050
ω scansθmax = 25.0°, θmin = 2.5°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −16→16
Tmin = 0.913, Tmax = 1.000k = −9→9
8929 measured reflectionsl = −19→19
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.076Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.134H-atom parameters constrained
S = 1.24w = 1/[σ2(Fo2) + (0.0357P)2 + 3.0521P] where P = (Fo2 + 2Fc2)/3
1607 reflections(Δ/σ)max < 0.001
128 parametersΔρmax = 0.33 e Å3
0 restraintsΔρmin = −0.21 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.19304 (8)0.68102 (19)0.24214 (6)0.0785 (5)
O10.00000.5351 (5)0.25000.0640 (11)
O20.28820 (16)0.5281 (3)0.37180 (14)0.0525 (7)
N10.1587 (2)0.6557 (4)0.39768 (17)0.0485 (8)
N20.2056 (2)0.5752 (4)0.46924 (17)0.0488 (8)
N30.4202 (2)0.3330 (4)0.46674 (18)0.0549 (8)
C10.00000.6876 (7)0.25000.0453 (12)
C20.0834 (2)0.7944 (5)0.2358 (2)0.0531 (10)
H2A0.09280.88790.27630.064*
H2B0.06750.84710.18120.064*
C30.2100 (2)0.6238 (5)0.3439 (2)0.0472 (9)
C40.2798 (2)0.5024 (4)0.45132 (19)0.0394 (8)
C50.3528 (2)0.4016 (4)0.5029 (2)0.0431 (8)
C60.3488 (3)0.3797 (5)0.5839 (2)0.0500 (9)
H60.29930.43040.60700.060*
C70.4183 (3)0.2824 (5)0.6308 (2)0.0587 (10)
H70.41720.26350.68680.070*
C80.4890 (3)0.2137 (5)0.5952 (3)0.0610 (11)
H80.53820.14750.62630.073*
C90.4878 (3)0.2419 (5)0.5144 (3)0.0637 (11)
H90.53750.19420.49050.076*
U11U22U33U12U13U23
S10.0624 (7)0.1289 (11)0.0478 (6)0.0273 (7)0.0196 (5)0.0245 (7)
O10.076 (3)0.053 (3)0.056 (2)0.000−0.0065 (19)0.000
O20.0435 (14)0.0728 (18)0.0427 (14)0.0122 (12)0.0115 (11)0.0052 (12)
N10.0445 (17)0.059 (2)0.0407 (16)0.0085 (14)0.0045 (13)−0.0009 (14)
N20.0510 (18)0.058 (2)0.0365 (16)0.0064 (15)0.0064 (13)−0.0037 (14)
N30.0491 (18)0.066 (2)0.0516 (18)0.0100 (16)0.0151 (15)0.0038 (16)
C10.060 (3)0.047 (3)0.024 (2)0.000−0.006 (2)0.000
C20.052 (2)0.064 (3)0.041 (2)0.0022 (19)0.0029 (16)0.0107 (18)
C30.0380 (19)0.059 (2)0.044 (2)0.0037 (17)0.0061 (16)0.0031 (18)
C40.0417 (19)0.044 (2)0.0327 (17)−0.0036 (15)0.0077 (14)−0.0048 (15)
C50.0433 (19)0.042 (2)0.0431 (19)−0.0034 (16)0.0068 (16)−0.0051 (16)
C60.054 (2)0.054 (2)0.042 (2)0.0065 (18)0.0084 (17)−0.0068 (18)
C70.067 (3)0.060 (3)0.047 (2)0.005 (2)0.0047 (19)0.0036 (19)
C80.054 (2)0.058 (3)0.067 (3)0.006 (2)0.000 (2)0.017 (2)
C90.049 (2)0.070 (3)0.074 (3)0.015 (2)0.017 (2)0.012 (2)
S1—C31.732 (4)C2—H2A0.9900
S1—C21.785 (4)C2—H2B0.9900
O1—C11.195 (6)C4—C51.460 (5)
O2—C31.356 (4)C5—C61.374 (5)
O2—C41.369 (4)C6—C71.379 (5)
N1—C31.281 (4)C6—H60.9500
N1—N21.411 (4)C7—C81.369 (5)
N2—C41.283 (4)C7—H70.9500
N3—C51.336 (4)C8—C91.365 (6)
N3—C91.341 (5)C8—H80.9500
C1—C21.507 (5)C9—H90.9500
C1—C2i1.507 (5)
C3—S1—C298.92 (17)N2—C4—C5129.3 (3)
C3—O2—C4101.9 (2)O2—C4—C5118.4 (3)
C3—N1—N2105.2 (3)N3—C5—C6123.6 (3)
C4—N2—N1106.7 (3)N3—C5—C4116.5 (3)
C5—N3—C9116.4 (3)C6—C5—C4119.9 (3)
O1—C1—C2123.7 (2)C5—C6—C7118.5 (3)
O1—C1—C2i123.7 (2)C5—C6—H6120.8
C2—C1—C2i112.6 (5)C7—C6—H6120.8
C1—C2—S1115.0 (3)C8—C7—C6118.8 (4)
C1—C2—H2A108.5C8—C7—H7120.6
S1—C2—H2A108.5C6—C7—H7120.6
C1—C2—H2B108.5C9—C8—C7119.0 (4)
S1—C2—H2B108.5C9—C8—H8120.5
H2A—C2—H2B107.5C7—C8—H8120.5
N1—C3—O2113.9 (3)N3—C9—C8123.7 (4)
N1—C3—S1129.8 (3)N3—C9—H9118.2
O2—C3—S1116.3 (2)C8—C9—H9118.2
N2—C4—O2112.3 (3)
C3—N1—N2—C4−0.3 (4)C3—O2—C4—C5179.9 (3)
O1—C1—C2—S1−13.9 (3)C9—N3—C5—C6−1.6 (5)
C2i—C1—C2—S1166.1 (3)C9—N3—C5—C4179.3 (3)
C3—S1—C2—C1−64.4 (3)N2—C4—C5—N3176.6 (3)
N2—N1—C3—O20.1 (4)O2—C4—C5—N3−3.8 (5)
N2—N1—C3—S1178.8 (3)N2—C4—C5—C6−2.5 (6)
C4—O2—C3—N10.2 (4)O2—C4—C5—C6177.1 (3)
C4—O2—C3—S1−178.8 (2)N3—C5—C6—C70.4 (6)
C2—S1—C3—N1−0.5 (4)C4—C5—C6—C7179.4 (3)
C2—S1—C3—O2178.3 (3)C5—C6—C7—C80.9 (6)
N1—N2—C4—O20.5 (4)C6—C7—C8—C9−0.8 (6)
N1—N2—C4—C5−179.8 (3)C5—N3—C9—C81.7 (6)
C3—O2—C4—N2−0.4 (4)C7—C8—C9—N3−0.5 (7)
D—H···AD—HH···AD···AD—H···A
C2—H2B···N3ii0.992.513.388 (4)148
C9—H9···N1iii0.952.543.449 (5)161
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C2—H2B⋯N3i0.992.513.388 (4)148
C9—H9⋯N1ii0.952.543.449 (5)161

Symmetry codes: (i) ; (ii) .

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