Literature DB >> 21523083

2,2-Dimethyl-5-{[(4-nitro-phen-yl)amino]-methyl-idene}-1,3-dioxane-4,6-dione.

Ying-Hong Yang, Zi-Cheng Li, You-Fu Luo.   

Abstract

In the title compound, C(13)H(12)N(2)O(6), the dihedral angle between the benzene ring and the amino-methyl-ene unit is 5.42 (16)°, while the angle between the amino-methyl-ene unit and the dioxane ring is 3.06 (43)°. The dioxane ring shows a half-boat conformation, in which the C atom between the dioxane ring O atoms is 0.464 (10) Å out of the plane. An intra-molecular N-H⋯O hydrogen bond stabilizes the mol-ecular conformation. In the crystal, a three-dimensional framework is built up via inter-molecular N-H⋯O hydrogen bonds.

Entities:  

Year:  2011        PMID: 21523083      PMCID: PMC3051475          DOI: 10.1107/S1600536811001103

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the synthesis and biological activity of related compounds, see: Cassis et al. (1985 ▶); Griera et al. (1997 ▶); Darque et al. (2009 ▶).

Experimental

Crystal data

C13H12N2O6 M = 292.25 Monoclinic, a = 12.2822 (8) Å b = 12.2762 (7) Å c = 9.2760 (6) Å β = 106.636 (7)° V = 1340.08 (15) Å3 Z = 4 Mo Kα radiation μ = 0.12 mm−1 T = 293 K 0.22 × 0.15 × 0.10 mm

Data collection

Oxford Diffraction Xcalibur Eos diffractometer Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2010 ▶) T min = 0.933, T max = 1.0 6063 measured reflections 2741 independent reflections 1432 reflections with I > 2σ(I) R int = 0.031

Refinement

R[F 2 > 2σ(F 2)] = 0.052 wR(F 2) = 0.126 S = 1.00 2741 reflections 192 parameters H-atom parameters constrained Δρmax = 0.17 e Å−3 Δρmin = −0.15 e Å−3 Data collection: CrysAlis PRO (Oxford Diffraction, 2010 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: OLEX2 (Dolomanov, 2009 ▶); software used to prepare material for publication: OLEX2. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536811001103/pb2051sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536811001103/pb2051Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C13H12N2O6F(000) = 608
Mr = 292.25Dx = 1.449 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.7107 Å
Hall symbol: -P 2ybcCell parameters from 1825 reflections
a = 12.2822 (8) Åθ = 3.0–29.1°
b = 12.2762 (7) ŵ = 0.12 mm1
c = 9.2760 (6) ÅT = 293 K
β = 106.636 (7)°Block, colorless
V = 1340.08 (15) Å30.22 × 0.15 × 0.10 mm
Z = 4
Oxford Diffraction Xcalibur Eos diffractometer2741 independent reflections
Radiation source: fine-focus sealed tube1432 reflections with I > 2σ(I)
graphiteRint = 0.031
Detector resolution: 16.0874 pixels mm-1θmax = 26.4°, θmin = 3.0°
ω scansh = −15→14
Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2010)k = −15→14
Tmin = 0.933, Tmax = 1.0l = −11→11
6063 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.052Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.126H-atom parameters constrained
S = 1.00w = 1/[σ2(Fo2) + (0.0459P)2] where P = (Fo2 + 2Fc2)/3
2741 reflections(Δ/σ)max < 0.001
192 parametersΔρmax = 0.17 e Å3
0 restraintsΔρmin = −0.15 e Å3
Experimental. CrysAlisPro, Oxford Diffraction Ltd., Version 1.171.34.40 (release 27-08-2010 CrysAlis171 .NET) (compiled Aug 27 2010,11:50:40) Empirical absorption correction using spherical harmonics, implemented in SCALE3 ABSPACK scaling algorithm.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.69558 (14)0.20994 (13)0.55007 (17)0.0590 (5)
O20.68603 (13)0.02148 (12)0.59936 (18)0.0621 (5)
O30.58804 (16)0.33063 (14)0.6199 (2)0.0731 (6)
O40.55320 (14)−0.04417 (12)0.69224 (19)0.0669 (5)
O50.07063 (17)0.30379 (18)1.0992 (2)0.0965 (7)
O60.02953 (19)0.13441 (18)1.1075 (2)0.0978 (7)
N10.08472 (19)0.2076 (2)1.0746 (2)0.0682 (6)
N20.42612 (16)0.10150 (15)0.80560 (19)0.0532 (5)
H20.43890.03320.79790.064*
C10.1735 (2)0.1808 (2)1.0033 (3)0.0512 (6)
C20.2364 (2)0.2628 (2)0.9673 (3)0.0610 (7)
H2A0.22250.33490.98720.073*
C30.3200 (2)0.23774 (19)0.9015 (3)0.0599 (7)
H30.36250.29310.87520.072*
C40.3412 (2)0.13024 (18)0.8742 (2)0.0475 (6)
C50.2780 (2)0.04875 (19)0.9127 (2)0.0578 (7)
H50.2930−0.02370.89590.069*
C60.1926 (2)0.0739 (2)0.9760 (3)0.0619 (7)
H60.14850.01910.99980.074*
C70.4875 (2)0.17060 (19)0.7523 (2)0.0519 (6)
H70.47280.24420.76150.062*
C80.5701 (2)0.14631 (17)0.6851 (2)0.0473 (6)
C90.6166 (2)0.2361 (2)0.6219 (3)0.0525 (6)
C100.60071 (19)0.03607 (19)0.6628 (2)0.0511 (6)
C110.7596 (2)0.11232 (19)0.5931 (3)0.0532 (6)
C120.8456 (2)0.1284 (2)0.7444 (3)0.0690 (8)
H12A0.80680.14460.81830.104*
H12C0.89500.18780.73870.104*
H12B0.88960.06320.77260.104*
C130.8114 (2)0.0867 (2)0.4690 (3)0.0759 (8)
H13B0.85430.02040.49200.114*
H13C0.86070.14520.45930.114*
H13A0.75230.07820.37620.114*
U11U22U33U12U13U23
O10.0627 (12)0.0520 (10)0.0669 (11)−0.0033 (9)0.0258 (10)0.0107 (8)
O20.0610 (11)0.0457 (10)0.0923 (12)−0.0069 (8)0.0423 (10)−0.0037 (9)
O30.0796 (14)0.0420 (10)0.1021 (14)−0.0003 (10)0.0332 (11)0.0071 (10)
O40.0672 (12)0.0411 (10)0.1041 (14)−0.0106 (9)0.0433 (11)−0.0009 (9)
O50.0895 (16)0.0796 (15)0.1366 (19)0.0217 (12)0.0585 (15)−0.0083 (13)
O60.0944 (17)0.0955 (16)0.1287 (18)−0.0093 (13)0.0723 (15)0.0001 (13)
N10.0586 (16)0.0776 (17)0.0710 (15)0.0078 (14)0.0227 (13)−0.0020 (14)
N20.0587 (14)0.0437 (11)0.0612 (12)−0.0031 (10)0.0239 (11)−0.0054 (10)
C10.0471 (15)0.0550 (16)0.0535 (15)0.0051 (13)0.0174 (12)−0.0008 (12)
C20.0594 (17)0.0466 (15)0.0818 (18)0.0016 (13)0.0277 (15)−0.0086 (14)
C30.0608 (17)0.0451 (15)0.0818 (18)−0.0078 (13)0.0331 (15)−0.0046 (13)
C40.0484 (15)0.0463 (14)0.0487 (14)0.0026 (12)0.0153 (12)−0.0019 (11)
C50.0762 (19)0.0415 (14)0.0645 (16)0.0012 (13)0.0342 (15)0.0017 (12)
C60.0730 (19)0.0531 (17)0.0698 (17)−0.0020 (14)0.0369 (15)0.0070 (13)
C70.0546 (16)0.0451 (14)0.0541 (15)−0.0042 (12)0.0123 (13)−0.0046 (12)
C80.0506 (15)0.0378 (13)0.0560 (15)−0.0043 (11)0.0192 (13)0.0001 (11)
C90.0492 (16)0.0509 (16)0.0528 (15)−0.0054 (13)0.0072 (12)0.0013 (13)
C100.0473 (15)0.0470 (15)0.0599 (15)−0.0066 (12)0.0169 (13)−0.0002 (12)
C110.0536 (16)0.0483 (15)0.0624 (16)−0.0090 (13)0.0238 (14)0.0034 (13)
C120.0577 (18)0.0740 (18)0.0759 (18)−0.0065 (15)0.0199 (15)0.0105 (15)
C130.078 (2)0.0794 (19)0.0812 (18)−0.0113 (17)0.0400 (17)−0.0039 (16)
O1—C91.363 (3)C3—C41.382 (3)
O1—C111.426 (3)C4—C51.375 (3)
O2—C101.353 (2)C5—H50.9300
O2—C111.447 (3)C5—C61.375 (3)
O3—C91.211 (3)C6—H60.9300
O4—C101.215 (2)C7—H70.9300
O5—N11.224 (3)C7—C81.366 (3)
O6—N11.216 (3)C8—C91.442 (3)
N1—C11.465 (3)C8—C101.435 (3)
N2—H20.8600C11—C121.508 (3)
N2—C41.414 (3)C11—C131.500 (3)
N2—C71.322 (3)C12—H12A0.9600
C1—C21.367 (3)C12—H12C0.9600
C1—C61.370 (3)C12—H12B0.9600
C2—H2A0.9300C13—H13B0.9600
C2—C31.372 (3)C13—H13C0.9600
C3—H30.9300C13—H13A0.9600
O1—C9—C8116.1 (2)C4—C5—H5119.9
O1—C11—O2110.98 (19)C4—C5—C6120.2 (2)
O1—C11—C12109.5 (2)C5—C4—N2118.7 (2)
O1—C11—C13106.38 (19)C5—C4—C3119.8 (2)
O2—C10—C8117.1 (2)C5—C6—H6120.4
O2—C11—C12110.04 (19)C6—C1—N1119.3 (2)
O2—C11—C13106.03 (19)C6—C5—H5119.9
O3—C9—O1117.5 (2)C7—N2—H2117.2
O3—C9—C8126.3 (2)C7—N2—C4125.6 (2)
O4—C10—O2118.2 (2)C7—C8—C9116.8 (2)
O4—C10—C8124.7 (2)C7—C8—C10122.1 (2)
O5—N1—C1117.7 (2)C8—C7—H7116.3
O6—N1—O5123.2 (2)C9—O1—C11118.27 (17)
O6—N1—C1119.2 (2)C10—O2—C11119.07 (18)
N2—C7—H7116.3C10—C8—C9120.7 (2)
N2—C7—C8127.4 (2)C11—C12—H12A109.5
C1—C2—H2A120.3C11—C12—H12C109.5
C1—C2—C3119.4 (2)C11—C12—H12B109.5
C1—C6—C5119.2 (2)C11—C13—H13B109.5
C1—C6—H6120.4C11—C13—H13C109.5
C2—C1—N1119.4 (2)C11—C13—H13A109.5
C2—C1—C6121.4 (2)H12A—C12—H12C109.5
C2—C3—H3120.0H12A—C12—H12B109.5
C2—C3—C4120.0 (2)H12C—C12—H12B109.5
C3—C2—H2A120.3C13—C11—C12113.8 (2)
C3—C4—N2121.5 (2)H13B—C13—H13C109.5
C4—N2—H2117.2H13B—C13—H13A109.5
C4—C3—H3120.0H13C—C13—H13A109.5
D—H···AD—HH···AD···AD—H···A
N2—H2···O3i0.862.653.411 (3)148
N2—H2···O40.862.152.771 (2)129
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H2⋯O3i0.862.653.411 (3)148
N2—H2⋯O40.862.152.771 (2)129

Symmetry code: (i) .

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