| Literature DB >> 21523083 |
Ying-Hong Yang, Zi-Cheng Li, You-Fu Luo.
Abstract
In the title compound, C(13)H(12)N(2)O(6), the dihedral angle between the benzene ring and the amino-methyl-ene unit is 5.42 (16)°, while the angle between the amino-methyl-ene unit and the dioxane ring is 3.06 (43)°. The dioxane ring shows a half-boat conformation, in which the C atom between the dioxane ring O atoms is 0.464 (10) Å out of the plane. An intra-molecular N-H⋯O hydrogen bond stabilizes the mol-ecular conformation. In the crystal, a three-dimensional framework is built up via inter-molecular N-H⋯O hydrogen bonds.Entities:
Year: 2011 PMID: 21523083 PMCID: PMC3051475 DOI: 10.1107/S1600536811001103
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C13H12N2O6 | |
| Monoclinic, | Mo |
| Hall symbol: -P 2ybc | Cell parameters from 1825 reflections |
| θ = 3.0–29.1° | |
| µ = 0.12 mm−1 | |
| β = 106.636 (7)° | Block, colorless |
| 0.22 × 0.15 × 0.10 mm | |
| Oxford Diffraction Xcalibur Eos diffractometer | 2741 independent reflections |
| Radiation source: fine-focus sealed tube | 1432 reflections with |
| graphite | |
| Detector resolution: 16.0874 pixels mm-1 | θmax = 26.4°, θmin = 3.0° |
| ω scans | |
| Absorption correction: multi-scan ( | |
| 6063 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H-atom parameters constrained | |
| 2741 reflections | (Δ/σ)max < 0.001 |
| 192 parameters | Δρmax = 0.17 e Å−3 |
| 0 restraints | Δρmin = −0.15 e Å−3 |
| Experimental. CrysAlisPro, Oxford Diffraction Ltd., Version 1.171.34.40 (release 27-08-2010 CrysAlis171 .NET) (compiled Aug 27 2010,11:50:40) Empirical absorption correction using spherical harmonics, implemented in SCALE3 ABSPACK scaling algorithm. |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| O1 | 0.69558 (14) | 0.20994 (13) | 0.55007 (17) | 0.0590 (5) | |
| O2 | 0.68603 (13) | 0.02148 (12) | 0.59936 (18) | 0.0621 (5) | |
| O3 | 0.58804 (16) | 0.33063 (14) | 0.6199 (2) | 0.0731 (6) | |
| O4 | 0.55320 (14) | −0.04417 (12) | 0.69224 (19) | 0.0669 (5) | |
| O5 | 0.07063 (17) | 0.30379 (18) | 1.0992 (2) | 0.0965 (7) | |
| O6 | 0.02953 (19) | 0.13441 (18) | 1.1075 (2) | 0.0978 (7) | |
| N1 | 0.08472 (19) | 0.2076 (2) | 1.0746 (2) | 0.0682 (6) | |
| N2 | 0.42612 (16) | 0.10150 (15) | 0.80560 (19) | 0.0532 (5) | |
| H2 | 0.4389 | 0.0332 | 0.7979 | 0.064* | |
| C1 | 0.1735 (2) | 0.1808 (2) | 1.0033 (3) | 0.0512 (6) | |
| C2 | 0.2364 (2) | 0.2628 (2) | 0.9673 (3) | 0.0610 (7) | |
| H2A | 0.2225 | 0.3349 | 0.9872 | 0.073* | |
| C3 | 0.3200 (2) | 0.23774 (19) | 0.9015 (3) | 0.0599 (7) | |
| H3 | 0.3625 | 0.2931 | 0.8752 | 0.072* | |
| C4 | 0.3412 (2) | 0.13024 (18) | 0.8742 (2) | 0.0475 (6) | |
| C5 | 0.2780 (2) | 0.04875 (19) | 0.9127 (2) | 0.0578 (7) | |
| H5 | 0.2930 | −0.0237 | 0.8959 | 0.069* | |
| C6 | 0.1926 (2) | 0.0739 (2) | 0.9760 (3) | 0.0619 (7) | |
| H6 | 0.1485 | 0.0191 | 0.9998 | 0.074* | |
| C7 | 0.4875 (2) | 0.17060 (19) | 0.7523 (2) | 0.0519 (6) | |
| H7 | 0.4728 | 0.2442 | 0.7615 | 0.062* | |
| C8 | 0.5701 (2) | 0.14631 (17) | 0.6851 (2) | 0.0473 (6) | |
| C9 | 0.6166 (2) | 0.2361 (2) | 0.6219 (3) | 0.0525 (6) | |
| C10 | 0.60071 (19) | 0.03607 (19) | 0.6628 (2) | 0.0511 (6) | |
| C11 | 0.7596 (2) | 0.11232 (19) | 0.5931 (3) | 0.0532 (6) | |
| C12 | 0.8456 (2) | 0.1284 (2) | 0.7444 (3) | 0.0690 (8) | |
| H12A | 0.8068 | 0.1446 | 0.8183 | 0.104* | |
| H12C | 0.8950 | 0.1878 | 0.7387 | 0.104* | |
| H12B | 0.8896 | 0.0632 | 0.7726 | 0.104* | |
| C13 | 0.8114 (2) | 0.0867 (2) | 0.4690 (3) | 0.0759 (8) | |
| H13B | 0.8543 | 0.0204 | 0.4920 | 0.114* | |
| H13C | 0.8607 | 0.1452 | 0.4593 | 0.114* | |
| H13A | 0.7523 | 0.0782 | 0.3762 | 0.114* |
| O1 | 0.0627 (12) | 0.0520 (10) | 0.0669 (11) | −0.0033 (9) | 0.0258 (10) | 0.0107 (8) |
| O2 | 0.0610 (11) | 0.0457 (10) | 0.0923 (12) | −0.0069 (8) | 0.0423 (10) | −0.0037 (9) |
| O3 | 0.0796 (14) | 0.0420 (10) | 0.1021 (14) | −0.0003 (10) | 0.0332 (11) | 0.0071 (10) |
| O4 | 0.0672 (12) | 0.0411 (10) | 0.1041 (14) | −0.0106 (9) | 0.0433 (11) | −0.0009 (9) |
| O5 | 0.0895 (16) | 0.0796 (15) | 0.1366 (19) | 0.0217 (12) | 0.0585 (15) | −0.0083 (13) |
| O6 | 0.0944 (17) | 0.0955 (16) | 0.1287 (18) | −0.0093 (13) | 0.0723 (15) | 0.0001 (13) |
| N1 | 0.0586 (16) | 0.0776 (17) | 0.0710 (15) | 0.0078 (14) | 0.0227 (13) | −0.0020 (14) |
| N2 | 0.0587 (14) | 0.0437 (11) | 0.0612 (12) | −0.0031 (10) | 0.0239 (11) | −0.0054 (10) |
| C1 | 0.0471 (15) | 0.0550 (16) | 0.0535 (15) | 0.0051 (13) | 0.0174 (12) | −0.0008 (12) |
| C2 | 0.0594 (17) | 0.0466 (15) | 0.0818 (18) | 0.0016 (13) | 0.0277 (15) | −0.0086 (14) |
| C3 | 0.0608 (17) | 0.0451 (15) | 0.0818 (18) | −0.0078 (13) | 0.0331 (15) | −0.0046 (13) |
| C4 | 0.0484 (15) | 0.0463 (14) | 0.0487 (14) | 0.0026 (12) | 0.0153 (12) | −0.0019 (11) |
| C5 | 0.0762 (19) | 0.0415 (14) | 0.0645 (16) | 0.0012 (13) | 0.0342 (15) | 0.0017 (12) |
| C6 | 0.0730 (19) | 0.0531 (17) | 0.0698 (17) | −0.0020 (14) | 0.0369 (15) | 0.0070 (13) |
| C7 | 0.0546 (16) | 0.0451 (14) | 0.0541 (15) | −0.0042 (12) | 0.0123 (13) | −0.0046 (12) |
| C8 | 0.0506 (15) | 0.0378 (13) | 0.0560 (15) | −0.0043 (11) | 0.0192 (13) | 0.0001 (11) |
| C9 | 0.0492 (16) | 0.0509 (16) | 0.0528 (15) | −0.0054 (13) | 0.0072 (12) | 0.0013 (13) |
| C10 | 0.0473 (15) | 0.0470 (15) | 0.0599 (15) | −0.0066 (12) | 0.0169 (13) | −0.0002 (12) |
| C11 | 0.0536 (16) | 0.0483 (15) | 0.0624 (16) | −0.0090 (13) | 0.0238 (14) | 0.0034 (13) |
| C12 | 0.0577 (18) | 0.0740 (18) | 0.0759 (18) | −0.0065 (15) | 0.0199 (15) | 0.0105 (15) |
| C13 | 0.078 (2) | 0.0794 (19) | 0.0812 (18) | −0.0113 (17) | 0.0400 (17) | −0.0039 (16) |
| O1—C9 | 1.363 (3) | C3—C4 | 1.382 (3) |
| O1—C11 | 1.426 (3) | C4—C5 | 1.375 (3) |
| O2—C10 | 1.353 (2) | C5—H5 | 0.9300 |
| O2—C11 | 1.447 (3) | C5—C6 | 1.375 (3) |
| O3—C9 | 1.211 (3) | C6—H6 | 0.9300 |
| O4—C10 | 1.215 (2) | C7—H7 | 0.9300 |
| O5—N1 | 1.224 (3) | C7—C8 | 1.366 (3) |
| O6—N1 | 1.216 (3) | C8—C9 | 1.442 (3) |
| N1—C1 | 1.465 (3) | C8—C10 | 1.435 (3) |
| N2—H2 | 0.8600 | C11—C12 | 1.508 (3) |
| N2—C4 | 1.414 (3) | C11—C13 | 1.500 (3) |
| N2—C7 | 1.322 (3) | C12—H12A | 0.9600 |
| C1—C2 | 1.367 (3) | C12—H12C | 0.9600 |
| C1—C6 | 1.370 (3) | C12—H12B | 0.9600 |
| C2—H2A | 0.9300 | C13—H13B | 0.9600 |
| C2—C3 | 1.372 (3) | C13—H13C | 0.9600 |
| C3—H3 | 0.9300 | C13—H13A | 0.9600 |
| O1—C9—C8 | 116.1 (2) | C4—C5—H5 | 119.9 |
| O1—C11—O2 | 110.98 (19) | C4—C5—C6 | 120.2 (2) |
| O1—C11—C12 | 109.5 (2) | C5—C4—N2 | 118.7 (2) |
| O1—C11—C13 | 106.38 (19) | C5—C4—C3 | 119.8 (2) |
| O2—C10—C8 | 117.1 (2) | C5—C6—H6 | 120.4 |
| O2—C11—C12 | 110.04 (19) | C6—C1—N1 | 119.3 (2) |
| O2—C11—C13 | 106.03 (19) | C6—C5—H5 | 119.9 |
| O3—C9—O1 | 117.5 (2) | C7—N2—H2 | 117.2 |
| O3—C9—C8 | 126.3 (2) | C7—N2—C4 | 125.6 (2) |
| O4—C10—O2 | 118.2 (2) | C7—C8—C9 | 116.8 (2) |
| O4—C10—C8 | 124.7 (2) | C7—C8—C10 | 122.1 (2) |
| O5—N1—C1 | 117.7 (2) | C8—C7—H7 | 116.3 |
| O6—N1—O5 | 123.2 (2) | C9—O1—C11 | 118.27 (17) |
| O6—N1—C1 | 119.2 (2) | C10—O2—C11 | 119.07 (18) |
| N2—C7—H7 | 116.3 | C10—C8—C9 | 120.7 (2) |
| N2—C7—C8 | 127.4 (2) | C11—C12—H12A | 109.5 |
| C1—C2—H2A | 120.3 | C11—C12—H12C | 109.5 |
| C1—C2—C3 | 119.4 (2) | C11—C12—H12B | 109.5 |
| C1—C6—C5 | 119.2 (2) | C11—C13—H13B | 109.5 |
| C1—C6—H6 | 120.4 | C11—C13—H13C | 109.5 |
| C2—C1—N1 | 119.4 (2) | C11—C13—H13A | 109.5 |
| C2—C1—C6 | 121.4 (2) | H12A—C12—H12C | 109.5 |
| C2—C3—H3 | 120.0 | H12A—C12—H12B | 109.5 |
| C2—C3—C4 | 120.0 (2) | H12C—C12—H12B | 109.5 |
| C3—C2—H2A | 120.3 | C13—C11—C12 | 113.8 (2) |
| C3—C4—N2 | 121.5 (2) | H13B—C13—H13C | 109.5 |
| C4—N2—H2 | 117.2 | H13B—C13—H13A | 109.5 |
| C4—C3—H3 | 120.0 | H13C—C13—H13A | 109.5 |
| H··· | ||||
| N2—H2···O3i | 0.86 | 2.65 | 3.411 (3) | 148 |
| N2—H2···O4 | 0.86 | 2.15 | 2.771 (2) | 129 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N2—H2⋯O3i | 0.86 | 2.65 | 3.411 (3) | 148 |
| N2—H2⋯O4 | 0.86 | 2.15 | 2.771 (2) | 129 |
Symmetry code: (i) .