Literature DB >> 21523065

5-[(2-Chloro-4-nitro-anilino)methyl-idene]-2,2-dimethyl-1,3-dioxane-4,6-dione.

Xian-Qiu Lan, Xiao-Feng Zhang, Ying-Hong Yang, You-Fu Luo.   

Abstract

In the title compound, C(13)H(11)ClN(2)O(6), the dihedral angles between the n class="Chemical">benzene ring and the amino-methyl-ene unit and between the amino-methyl-ene group and the dioxane ring are 8.19 (14) and 1.39 (17)°, respectively. The dioxane ring has a half-boat conformation, in which the C atom between the dioxane O atoms is 0.662 (4)Å out of the plane through the remaining ring atoms. Intra-molecular N-H⋯O and N-H⋯Cl inter-actions occur.

Entities:  

Year:  2011        PMID: 21523065      PMCID: PMC3051652          DOI: 10.1107/S160053681100095X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the synthesis of related compounds, see: Cassis et al. (1985 ▶). For the biological activity of related compounds, see: Griera et al. (1997 ▶); Darque et al. (2009 ▶).

Experimental

Crystal data

C13H11ClN2O6 M = 326.69 Monoclinic, a = 13.5850 (5) Å b = 5.04379 (14) Å c = 21.0272 (7) Å β = 104.427 (4)° V = 1395.35 (8) Å3 Z = 4 Mo Kα radiation μ = 0.31 mm−1 T = 293 K 0.40 × 0.40 × 0.30 mm

Data collection

Oxford Diffraction Xcalibur Eos diffractometer Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2010) ▶ T min = 0.984, T max = 1.0 6136 measured reflections 2853 independent reflections 2141 reflections with I > 2σ(I) R int = 0.021

Refinement

R[F 2 > 2σ(F 2)] = 0.041 wR(F 2) = 0.104 S = 1.04 2853 reflections 201 parameters H-atom parameters constrained Δρmax = 0.17 e Å−3 Δρmin = −0.29 e Å−3 Data collection: CrysAlis PRO (Oxford Diffraction, 2010) ▶; cell refinement: CrysAlis PRO ▶; data reduction: CrysAlis PRO ▶; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: OLEX2 (Dolomanov et al., 2009 ▶); software used to prepare material for publication: OLEX2. Crystal structure: contains datablocks I, global. DOI: 10.1107/S160053681100095X/bq2269sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S160053681100095X/bq2269Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C13H11ClN2O6F(000) = 672
Mr = 326.69Dx = 1.555 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.7107 Å
Hall symbol: -P 2ybcCell parameters from 2432 reflections
a = 13.5850 (5) Åθ = 3.0–29.2°
b = 5.04379 (14) ŵ = 0.31 mm1
c = 21.0272 (7) ÅT = 293 K
β = 104.427 (4)°Block, colorless
V = 1395.35 (8) Å30.40 × 0.40 × 0.30 mm
Z = 4
Oxford Diffraction Xcalibur Eos diffractometer2853 independent reflections
Radiation source: fine-focus sealed tube2141 reflections with I > 2σ(I)
graphiteRint = 0.021
Detector resolution: 16.0874 pixels mm-1θmax = 26.4°, θmin = 3.1°
ω scansh = −16→16
Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2010)k = −6→6
Tmin = 0.984, Tmax = 1.0l = −25→26
6136 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.041Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.104H-atom parameters constrained
S = 1.04w = 1/[σ2(Fo2) + (0.0478P)2 + 0.1291P] where P = (Fo2 + 2Fc2)/3
2853 reflections(Δ/σ)max < 0.001
201 parametersΔρmax = 0.17 e Å3
0 restraintsΔρmin = −0.29 e Å3
Experimental. CrysAlisPro, Oxford Diffraction Ltd., Version 1.171.34.40 (release 27-08-2010 CrysAlis171 .NET) Empirical absorption correction using spherical harmonics, implemented in SCALE3 ABSPACK scaling algorithm.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl10.11303 (4)0.78022 (10)0.26632 (2)0.05062 (18)
O1−0.23464 (10)0.7514 (2)0.04172 (7)0.0446 (4)
O2−0.24014 (10)0.4073 (3)−0.03503 (6)0.0469 (4)
O3−0.09905 (11)0.8273 (3)0.12205 (7)0.0517 (4)
O4−0.10943 (10)0.1444 (3)−0.03156 (7)0.0509 (4)
O50.46457 (14)0.3369 (4)0.35706 (9)0.0855 (6)
O60.48067 (14)0.0203 (4)0.29216 (9)0.0910 (6)
N10.43369 (14)0.2060 (4)0.30716 (10)0.0592 (5)
N20.05320 (11)0.4776 (3)0.14363 (7)0.0360 (4)
H20.02630.61550.15650.043*
C10.33473 (15)0.2739 (4)0.26352 (9)0.0432 (5)
C20.27826 (15)0.4698 (4)0.28308 (9)0.0431 (5)
H2A0.30240.55690.32290.052*
C30.18530 (14)0.5341 (3)0.24251 (9)0.0377 (4)
C40.14835 (13)0.4042 (3)0.18250 (8)0.0337 (4)
C50.20803 (15)0.2071 (4)0.16447 (9)0.0421 (5)
H50.18470.11930.12470.051*
C60.30095 (15)0.1410 (4)0.20485 (10)0.0455 (5)
H60.34040.00860.19280.055*
C7−0.00122 (13)0.3622 (3)0.08932 (8)0.0336 (4)
H70.02540.21320.07360.040*
C8−0.09479 (13)0.4525 (3)0.05552 (8)0.0328 (4)
C9−0.14016 (14)0.6847 (3)0.07640 (9)0.0373 (4)
C10−0.29653 (14)0.5492 (4)0.00333 (10)0.0437 (5)
C11−0.14546 (14)0.3172 (4)−0.00500 (9)0.0359 (4)
C12−0.33222 (18)0.3613 (4)0.04848 (13)0.0656 (7)
H12B−0.37790.23370.02290.098*
H12C−0.36680.45900.07560.098*
H12A−0.27480.27130.07580.098*
C13−0.38047 (18)0.6932 (5)−0.04496 (12)0.0695 (7)
H13B−0.35140.8249−0.06780.104*
H13C−0.42450.7774−0.02180.104*
H13A−0.41880.5687−0.07600.104*
U11U22U33U12U13U23
Cl10.0589 (4)0.0482 (3)0.0464 (3)0.0072 (2)0.0162 (3)−0.0079 (2)
O10.0400 (8)0.0317 (6)0.0572 (9)0.0054 (6)0.0025 (7)−0.0053 (6)
O20.0393 (8)0.0582 (8)0.0405 (8)0.0068 (6)0.0048 (6)−0.0090 (7)
O30.0527 (9)0.0407 (7)0.0556 (9)0.0058 (6)0.0018 (7)−0.0167 (7)
O40.0477 (9)0.0585 (9)0.0464 (8)0.0064 (7)0.0118 (7)−0.0192 (7)
O50.0679 (12)0.1027 (14)0.0660 (11)0.0073 (10)−0.0210 (10)−0.0129 (11)
O60.0689 (12)0.1144 (15)0.0783 (13)0.0444 (12)−0.0031 (10)0.0001 (11)
N10.0447 (11)0.0748 (13)0.0522 (12)0.0057 (10)0.0013 (9)0.0098 (10)
N20.0349 (8)0.0370 (8)0.0364 (9)0.0019 (7)0.0092 (7)−0.0035 (7)
C10.0369 (11)0.0526 (12)0.0382 (11)0.0015 (9)0.0060 (9)0.0074 (9)
C20.0462 (12)0.0481 (11)0.0327 (10)−0.0039 (9)0.0051 (9)−0.0018 (9)
C30.0409 (11)0.0385 (10)0.0358 (10)−0.0014 (8)0.0136 (9)0.0005 (8)
C40.0317 (10)0.0373 (9)0.0333 (10)−0.0022 (7)0.0107 (8)0.0030 (8)
C50.0404 (11)0.0500 (11)0.0357 (11)0.0028 (9)0.0090 (9)−0.0051 (9)
C60.0412 (11)0.0497 (11)0.0467 (12)0.0067 (9)0.0128 (9)−0.0008 (10)
C70.0340 (10)0.0351 (9)0.0340 (10)−0.0001 (8)0.0130 (8)−0.0005 (8)
C80.0342 (10)0.0314 (9)0.0344 (10)−0.0008 (7)0.0115 (8)−0.0017 (8)
C90.0388 (10)0.0308 (9)0.0416 (11)−0.0010 (8)0.0086 (9)0.0004 (8)
C100.0365 (10)0.0413 (10)0.0529 (12)0.0015 (8)0.0099 (9)−0.0124 (9)
C110.0339 (10)0.0400 (10)0.0356 (10)−0.0012 (8)0.0120 (8)−0.0014 (9)
C120.0596 (15)0.0528 (13)0.0971 (19)−0.0072 (11)0.0431 (14)−0.0094 (13)
C130.0470 (14)0.0787 (17)0.0703 (16)0.0174 (12)−0.0089 (12)−0.0148 (13)
Cl1—C31.7321 (19)C3—C41.399 (2)
O1—C91.351 (2)C4—C51.394 (2)
O1—C101.436 (2)C5—H50.9300
O2—C101.434 (2)C5—C61.375 (3)
O2—C111.362 (2)C6—H60.9300
O3—C91.218 (2)C7—H70.9300
O4—C111.203 (2)C7—C81.371 (2)
O5—N11.222 (2)C8—C91.442 (2)
O6—N11.218 (2)C8—C111.457 (2)
N1—C11.467 (3)C10—C121.505 (3)
N2—H20.8600C10—C131.511 (3)
N2—C41.396 (2)C12—H12B0.9600
N2—C71.330 (2)C12—H12C0.9600
C1—C21.375 (3)C12—H12A0.9600
C1—C61.378 (3)C13—H13B0.9600
C2—H2A0.9300C13—H13C0.9600
C2—C31.375 (2)C13—H13A0.9600
O1—C9—C8117.28 (15)C5—C4—N2123.12 (16)
O1—C10—C12109.17 (17)C5—C4—C3118.49 (16)
O1—C10—C13105.94 (16)C5—C6—C1118.96 (19)
O2—C10—O1110.53 (15)C5—C6—H6120.5
O2—C10—C12109.99 (15)C6—C1—N1119.67 (19)
O2—C10—C13106.34 (17)C6—C5—C4120.78 (17)
O2—C11—C8115.76 (16)C6—C5—H5119.6
O3—C9—O1117.76 (16)C7—N2—H2115.8
O3—C9—C8124.94 (17)C7—N2—C4128.46 (15)
O4—C11—O2118.24 (17)C7—C8—C9121.58 (16)
O4—C11—C8125.91 (17)C7—C8—C11118.19 (16)
O5—N1—C1118.4 (2)C8—C7—H7118.5
O6—N1—O5123.2 (2)C9—O1—C10118.10 (13)
O6—N1—C1118.38 (19)C9—C8—C11120.12 (16)
N2—C4—C3118.39 (16)C10—C12—H12B109.5
N2—C7—H7118.5C10—C12—H12C109.5
N2—C7—C8123.03 (16)C10—C12—H12A109.5
C1—C2—H2A120.7C10—C13—H13B109.5
C1—C2—C3118.59 (17)C10—C13—H13C109.5
C1—C6—H6120.5C10—C13—H13A109.5
C2—C1—N1118.25 (18)C11—O2—C10118.74 (14)
C2—C1—C6122.08 (18)C12—C10—C13114.77 (19)
C2—C3—Cl1119.27 (14)H12B—C12—H12C109.5
C2—C3—C4121.10 (17)H12B—C12—H12A109.5
C3—C2—H2A120.7H12C—C12—H12A109.5
C4—N2—H2115.8H13B—C13—H13C109.5
C4—C3—Cl1119.63 (14)H13B—C13—H13A109.5
C4—C5—H5119.6H13C—C13—H13A109.5
D—H···AD—HH···AD···AD—H···A
N2—H2···Cl10.862.462.9328 (15)115
N2—H2···O30.861.992.670 (2)136
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H2⋯Cl10.862.462.9328 (15)115
N2—H2⋯O30.861.992.670 (2)136
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