Literature DB >> 21523062

1-Dibenzylamino-1-de-oxy-4,5-O-isopropyl-idene-β-d-fructopyran-ose.

Shiyong Huo1, Yueqing Li, Chaoyan Liang, Jihong Liu, Weijie Zhao.   

Abstract

The title compound C(23)H(29)NO(5), synthesized by the Amadori rearrangement of α-d-glucose with dibenzyl-amine and the ketalization, is shown to be a β-anomer. The fructopyran-ose ring adopts a chair conformation. The two benzene rings form a dihedral angle of 68.9 (1)°. In the crystal, non-classical inter-molecular C-H⋯O hydrogen bonds link the mol-ecules into a three-dimensional network.

Entities:  

Year:  2011        PMID: 21523062      PMCID: PMC3051515          DOI: 10.1107/S1600536810053973

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For details of the synthesis of the title compound and the related ketone catalyst for asymmetric epoxidation, see: Shu et al. (2003 ▶); Tian et al. (2000 ▶, 2002 ▶).

Experimental

Crystal data

C23H29NO5 M = 399.47 Orthorhombic, a = 8.328 (3) Å b = 15.635 (5) Å c = 16.547 (5) Å V = 2154.6 (12) Å3 Z = 4 Mo Kα radiation μ = 0.09 mm−1 T = 293 K 0.32 × 0.26 × 0.18 mm

Data collection

Bruker SMART APEX CCD diffractometer 8591 measured reflections 3746 independent reflections 3078 reflections with I > 2σ(I) R int = 0.029

Refinement

R[F 2 > 2σ(F 2)] = 0.037 wR(F 2) = 0.099 S = 0.99 3746 reflections 264 parameters 12 restraints H-atom parameters constrained Δρmax = 0.16 e Å−3 Δρmin = −0.14 e Å−3 Data collection: SMART (Bruker, 2005 ▶); cell refinement: SAINT-Plus (Bruker, 2001 ▶); data reduction: SAINT-Plus; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810053973/rk2247sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810053973/rk2247Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C23H29NO5Dx = 1.232 Mg m3
Mr = 399.47Melting point: 363 K
Orthorhombic, P212121Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ac 2abCell parameters from 2101 reflections
a = 8.328 (3) Åθ = 2.5–22.9°
b = 15.635 (5) ŵ = 0.09 mm1
c = 16.547 (5) ÅT = 293 K
V = 2154.6 (12) Å3Block, colourless
Z = 40.32 × 0.26 × 0.18 mm
F(000) = 856
Bruker SMART APEX CCD diffractometer3078 reflections with I > 2σ(I)
Radiation source: fine–focus sealed tubeRint = 0.029
graphiteθmax = 25.0°, θmin = 2.5°
φ– and ω–scansh = −9→9
8591 measured reflectionsk = −12→18
3746 independent reflectionsl = −19→19
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.037H-atom parameters constrained
wR(F2) = 0.099w = 1/[σ2(Fo2) + (0.0586P)2] where P = (Fo2 + 2Fc2)/3
S = 0.99(Δ/σ)max < 0.001
3746 reflectionsΔρmax = 0.16 e Å3
264 parametersΔρmin = −0.14 e Å3
12 restraintsExtinction correction: SHELXL, Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.0109 (15)
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R–factor wR and goodness of fit S are based on F2, conventional R–factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R–factors(gt) etc. and is not relevant to the choice of reflections for refinement. R–factors based on F2 are statistically about twice as large as those based on F, and R–factors based on ALL data will be even larger.
xyzUiso*/Ueq
N10.45371 (19)−0.03531 (9)−0.03276 (9)0.0445 (4)
O10.26735 (16)0.12669 (8)0.01447 (7)0.0462 (3)
O20.44619 (18)0.05470 (9)0.09987 (8)0.0570 (4)
H2A0.51760.05620.06580.086*
O30.1840 (3)−0.02563 (10)0.17613 (11)0.0803 (5)
H30.2784−0.04050.17760.120*
O40.03036 (19)0.23207 (9)0.11486 (7)0.0552 (4)
O50.02593 (19)0.14018 (9)0.22165 (8)0.0597 (4)
C10.2928 (3)0.20454 (12)0.05737 (11)0.0531 (5)
H1A0.26740.25220.02210.064*
H1B0.40540.20880.07180.064*
C20.1933 (3)0.21137 (12)0.13278 (11)0.0496 (5)
H2B0.23890.25530.16820.059*
C30.1735 (3)0.12850 (13)0.17977 (11)0.0488 (5)
H3B0.26100.12320.21900.059*
C40.1688 (3)0.04895 (12)0.12720 (11)0.0494 (5)
H4A0.06370.04690.10070.059*
C50.2971 (2)0.05151 (12)0.06144 (10)0.0430 (4)
C60.2938 (2)−0.02364 (12)0.00288 (11)0.0468 (5)
H6A0.2621−0.07520.03130.056*
H6B0.2159−0.0129−0.03950.056*
C70.4851 (3)−0.12466 (12)−0.05526 (12)0.0552 (5)
H7A0.5860−0.1272−0.08440.066*
H7B0.4012−0.1435−0.09180.066*
C80.4931 (3)−0.18588 (12)0.01473 (13)0.0530 (5)
C90.5592 (4)−0.16474 (16)0.08772 (15)0.0766 (7)
H9A0.5991−0.10980.09560.092*
C100.5678 (4)−0.2241 (2)0.15046 (17)0.0973 (10)
H10A0.6114−0.20840.20000.117*
C110.5121 (4)−0.30535 (19)0.1390 (2)0.0940 (10)
H11A0.5185−0.34520.18060.113*
C120.4479 (4)−0.32744 (19)0.0676 (3)0.0989 (10)
H12A0.4106−0.38290.05980.119*
C130.4368 (3)−0.26813 (14)0.00508 (19)0.0782 (7)
H13A0.3909−0.2842−0.04380.094*
C140.4789 (2)0.02062 (13)−0.10350 (11)0.0487 (5)
H14A0.43040.0759−0.09290.058*
H14B0.4248−0.0041−0.14990.058*
C150.6535 (2)0.03325 (11)−0.12364 (10)0.0422 (4)
C160.7148 (3)0.01268 (14)−0.19830 (12)0.0573 (5)
H16A0.6475−0.0112−0.23710.069*
C170.8741 (3)0.02674 (16)−0.21685 (14)0.0697 (7)
H17A0.91370.0117−0.26740.084*
C180.9742 (3)0.06300 (15)−0.16054 (15)0.0674 (6)
H18A1.08140.0729−0.17310.081*
C190.9159 (3)0.08463 (14)−0.08581 (15)0.0604 (6)
H19A0.98320.1094−0.04760.072*
C200.7577 (3)0.06950 (12)−0.06777 (12)0.0525 (5)
H20A0.71920.0839−0.01680.063*
C21−0.0606 (3)0.21023 (14)0.18498 (12)0.0547 (5)
C22−0.0670 (4)0.28284 (16)0.24500 (15)0.0808 (8)
H22A0.04020.29950.25920.121*
H22B−0.12320.26460.29260.121*
H22C−0.12210.33060.22130.121*
C23−0.2231 (3)0.1807 (2)0.15849 (16)0.0861 (8)
H23A−0.21170.13460.12070.129*
H23B−0.27910.22730.13320.129*
H23C−0.28290.16140.20460.129*
U11U22U33U12U13U23
N10.0465 (10)0.0434 (8)0.0437 (8)0.0012 (7)0.0014 (7)0.0021 (7)
O10.0531 (8)0.0446 (7)0.0408 (6)−0.0049 (6)0.0027 (6)0.0049 (6)
O20.0469 (8)0.0727 (9)0.0514 (7)−0.0011 (7)−0.0076 (6)0.0009 (7)
O30.1109 (15)0.0558 (9)0.0741 (10)0.0149 (9)0.0334 (11)0.0294 (8)
O40.0653 (10)0.0561 (8)0.0442 (7)0.0055 (7)0.0080 (7)0.0095 (6)
O50.0731 (10)0.0584 (9)0.0475 (7)0.0065 (8)0.0185 (7)0.0122 (7)
C10.0606 (14)0.0458 (10)0.0528 (11)−0.0090 (9)0.0062 (10)0.0019 (9)
C20.0558 (14)0.0499 (11)0.0430 (10)−0.0093 (9)0.0012 (10)−0.0005 (9)
C30.0522 (12)0.0571 (11)0.0370 (9)−0.0009 (10)0.0017 (9)0.0052 (9)
C40.0547 (13)0.0472 (10)0.0463 (10)0.0015 (9)0.0048 (10)0.0144 (9)
C50.0411 (11)0.0450 (9)0.0431 (9)−0.0026 (8)−0.0022 (8)0.0054 (8)
C60.0438 (12)0.0464 (10)0.0501 (10)−0.0039 (8)−0.0001 (9)0.0051 (9)
C70.0651 (14)0.0494 (11)0.0511 (10)0.0006 (10)0.0012 (10)−0.0058 (9)
C80.0459 (12)0.0477 (11)0.0655 (13)0.0076 (9)0.0075 (10)0.0001 (10)
C90.105 (2)0.0565 (13)0.0679 (14)0.0125 (14)−0.0144 (15)0.0049 (12)
C100.129 (3)0.090 (2)0.0731 (16)0.0303 (19)−0.0086 (17)0.0177 (16)
C110.093 (2)0.0794 (19)0.110 (2)0.0139 (16)0.014 (2)0.0413 (18)
C120.080 (2)0.0638 (16)0.153 (3)−0.0102 (15)0.000 (2)0.0341 (19)
C130.0732 (17)0.0566 (14)0.1049 (19)−0.0096 (12)−0.0098 (15)0.0108 (14)
C140.0523 (13)0.0525 (10)0.0413 (9)−0.0004 (10)−0.0045 (9)0.0049 (9)
C150.0498 (12)0.0368 (9)0.0400 (9)0.0008 (8)−0.0027 (9)0.0020 (8)
C160.0625 (15)0.0628 (12)0.0466 (11)−0.0070 (11)0.0016 (10)−0.0054 (10)
C170.0740 (17)0.0777 (16)0.0575 (12)−0.0052 (13)0.0190 (12)−0.0024 (13)
C180.0500 (14)0.0664 (14)0.0857 (16)0.0005 (11)0.0078 (13)0.0138 (13)
C190.0523 (14)0.0537 (12)0.0752 (15)−0.0066 (10)−0.0172 (12)0.0066 (11)
C200.0599 (14)0.0515 (11)0.0461 (10)0.0015 (10)−0.0060 (10)−0.0040 (9)
C210.0632 (14)0.0564 (11)0.0444 (10)0.0050 (10)0.0082 (10)0.0064 (9)
C220.112 (2)0.0641 (14)0.0663 (14)0.0090 (15)0.0213 (16)−0.0049 (13)
C230.0639 (18)0.123 (2)0.0719 (15)−0.0073 (16)0.0027 (14)0.0065 (16)
N1—C61.468 (2)C9—H9A0.9300
N1—C71.469 (2)C10—C111.366 (5)
N1—C141.476 (2)C10—H10A0.9300
O1—C11.425 (2)C11—C121.343 (5)
O1—C51.431 (2)C11—H11A0.9300
O2—C51.396 (2)C12—C131.392 (4)
O2—H2A0.8200C12—H12A0.9300
O3—C41.425 (2)C13—H13A0.9300
O3—H30.8200C14—C151.505 (3)
O4—C21.426 (3)C14—H14A0.9700
O4—C211.427 (2)C14—H14B0.9700
O5—C31.423 (3)C15—C161.375 (3)
O5—C211.445 (2)C15—C201.389 (3)
C1—C21.502 (3)C16—C171.380 (3)
C1—H1A0.9700C16—H16A0.9300
C1—H1B0.9700C17—C181.373 (3)
C2—C31.520 (3)C17—H17A0.9300
C2—H2B0.9800C18—C191.371 (3)
C3—C41.518 (3)C18—H18A0.9300
C3—H3B0.9800C19—C201.372 (3)
C4—C51.526 (3)C19—H19A0.9300
C4—H4A0.9800C20—H20A0.9300
C5—C61.523 (3)C21—C231.495 (4)
C6—H6A0.9700C21—C221.509 (3)
C6—H6B0.9700C22—H22A0.9600
C7—C81.504 (3)C22—H22B0.9600
C7—H7A0.9700C22—H22C0.9600
C7—H7B0.9700C23—H23A0.9600
C8—C91.368 (3)C23—H23B0.9600
C8—C131.378 (3)C23—H23C0.9600
C9—C101.394 (4)
C6—N1—C7112.42 (15)C10—C9—H9A119.4
C6—N1—C14111.94 (15)C11—C10—C9119.9 (3)
C7—N1—C14109.70 (15)C11—C10—H10A120.0
C1—O1—C5113.91 (13)C9—C10—H10A120.0
C5—O2—H2A109.5C12—C11—C10119.8 (3)
C4—O3—H3109.5C12—C11—H11A120.1
C2—O4—C21106.38 (15)C10—C11—H11A120.1
C3—O5—C21108.89 (14)C11—C12—C13120.6 (3)
O1—C1—C2113.12 (16)C11—C12—H12A119.7
O1—C1—H1A109.0C13—C12—H12A119.7
C2—C1—H1A109.0C8—C13—C12120.9 (3)
O1—C1—H1B109.0C8—C13—H13A119.6
C2—C1—H1B109.0C12—C13—H13A119.6
H1A—C1—H1B107.8N1—C14—C15112.98 (15)
O4—C2—C1111.62 (16)N1—C14—H14A109.0
O4—C2—C3101.33 (16)C15—C14—H14A109.0
C1—C2—C3115.10 (17)N1—C14—H14B109.0
O4—C2—H2B109.5C15—C14—H14B109.0
C1—C2—H2B109.5H14A—C14—H14B107.8
C3—C2—H2B109.5C16—C15—C20117.5 (2)
O5—C3—C4111.21 (17)C16—C15—C14121.80 (18)
O5—C3—C2103.50 (16)C20—C15—C14120.65 (17)
C4—C3—C2114.08 (14)C15—C16—C17121.3 (2)
O5—C3—H3B109.3C15—C16—H16A119.3
C4—C3—H3B109.3C17—C16—H16A119.3
C2—C3—H3B109.3C18—C17—C16119.9 (2)
O3—C4—C3110.03 (15)C18—C17—H17A120.0
O3—C4—C5111.37 (16)C16—C17—H17A120.0
C3—C4—C5111.65 (16)C19—C18—C17120.0 (2)
O3—C4—H4A107.9C19—C18—H18A120.0
C3—C4—H4A107.9C17—C18—H18A120.0
C5—C4—H4A107.9C18—C19—C20119.6 (2)
O2—C5—O1111.86 (14)C18—C19—H19A120.2
O2—C5—C6109.49 (15)C20—C19—H19A120.2
O1—C5—C6106.55 (13)C19—C20—C15121.7 (2)
O2—C5—C4107.41 (15)C19—C20—H20A119.1
O1—C5—C4106.71 (15)C15—C20—H20A119.1
C6—C5—C4114.87 (16)O4—C21—O5104.94 (17)
N1—C6—C5109.56 (15)O4—C21—C23108.43 (18)
N1—C6—H6A109.8O5—C21—C23109.9 (2)
C5—C6—H6A109.8O4—C21—C22111.94 (18)
N1—C6—H6B109.8O5—C21—C22108.14 (18)
C5—C6—H6B109.8C23—C21—C22113.1 (2)
H6A—C6—H6B108.2C21—C22—H22A109.5
N1—C7—C8114.70 (15)C21—C22—H22B109.5
N1—C7—H7A108.6H22A—C22—H22B109.5
C8—C7—H7A108.6C21—C22—H22C109.5
N1—C7—H7B108.6H22A—C22—H22C109.5
C8—C7—H7B108.6H22B—C22—H22C109.5
H7A—C7—H7B107.6C21—C23—H23A109.5
C9—C8—C13117.7 (2)C21—C23—H23B109.5
C9—C8—C7122.96 (19)H23A—C23—H23B109.5
C13—C8—C7119.3 (2)C21—C23—H23C109.5
C8—C9—C10121.2 (3)H23A—C23—H23C109.5
C8—C9—H9A119.4H23B—C23—H23C109.5
C3—C2—C1—O137.9 (3)C4—C3—C2—C1−32.9 (3)
D—H···AD—HH···AD···AD—H···A
C16—H16A···O5i0.932.573.389 (3)147
C17—H17A···O2ii0.932.703.614 (3)170
C19—H19A···O1iii0.932.593.428 (3)150
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C16—H16A⋯O5i0.932.573.389 (3)147
C17—H17A⋯O2ii0.932.703.614 (3)170
C19—H19A⋯O1iii0.932.593.428 (3)150

Symmetry codes: (i) ; (ii) ; (iii) .

  3 in total

1.  An improved synthesis of a ketone catalyst for asymmetric epoxidation of olefins.

Authors:  Lianhe Shu; Yu-Mei Shen; Christopher Burke; David Goeddel; Yian Shi
Journal:  J Org Chem       Date:  2003-06-13       Impact factor: 4.354

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Designing new chiral ketone catalysts. Asymmetric epoxidation of cis-olefins and terminal olefins.

Authors:  Hongqi Tian; Xuegong She; Hongwu Yu; Lianhe Shu; Yian Shi
Journal:  J Org Chem       Date:  2002-04-19       Impact factor: 4.354

  3 in total

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