Literature DB >> 21523058

6-Oxo-5-[(trifluoro-meth-yl)sulfon-yl]-1,2,4a,5,6,11b-hexa-hydro-1,3-dioxolo[4,5-j]phenanthridin-2-yl benzoate.

Chunli Wu, Pan Li, Xiufang Shi, Xiaotao Pan, Jizhou Wu.   

Abstract

In the title compound, C(22)H(16)F(3)NO(7)S, the two benzene rings are almost perpendicular, the dihedral angle between their mean planes being 87.1 (1)°. The terminal O atom of the benzoate moiety is disordered over two positions with site occupancies of 0.244 (15) and 0.756 (15). The crystal structure is stablized by two types of weak inter-molecular C-H⋯O hydrogen bonds.

Entities:  

Year:  2011        PMID: 21523058      PMCID: PMC3051489          DOI: 10.1107/S1600536811001085

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

The title compound is an unexpected product in our recent synthesis route of phenanthridones alkaloids. It shows potent inhibitory activity against the MCF-7 cells, SK—N—SH cells and SPC-A-1 cells. For details of the synthesis, see: Banwell et al. (1995 ▶); Szántó et al. (2009a ▶,b ▶); Pampin et al. (2003 ▶). For a recent study on the anti­tumor activity of phenanthridones alkaloids, see: Matveenko et al. (2009 ▶).

Experimental

Crystal data

C22H16F3NO7S M = 495.42 Triclinic, a = 5.3521 (5) Å b = 15.5146 (16) Å c = 15.5615 (14) Å α = 114.351 (2)° β = 95.145 (1)° γ = 97.072 (1)° V = 1154.07 (19) Å3 Z = 2 Mo Kα radiation μ = 0.21 mm−1 T = 298 K 0.45 × 0.33 × 0.19 mm

Data collection

Bruker SMART CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.913, T max = 0.962 5980 measured reflections 4008 independent reflections 2079 reflections with I > 2σ(I) R int = 0.041

Refinement

R[F 2 > 2σ(F 2)] = 0.066 wR(F 2) = 0.163 S = 1.00 4008 reflections 312 parameters H-atom parameters constrained Δρmax = 0.41 e Å−3 Δρmin = −0.30 e Å−3 Data collection: SMART (Siemens, 1996 ▶); cell refinement: SAINT (Siemens, 1996 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536811001085/zq2082sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536811001085/zq2082Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C22H16F3NO7SZ = 2
Mr = 495.42F(000) = 508
Triclinic, P1Dx = 1.426 Mg m3
Hall symbol: -P 1Melting point = 394–397 K
a = 5.3521 (5) ÅMo Kα radiation, λ = 0.71073 Å
b = 15.5146 (16) ÅCell parameters from 1287 reflections
c = 15.5615 (14) Åθ = 2.5–25.0°
α = 114.351 (2)°µ = 0.21 mm1
β = 95.145 (1)°T = 298 K
γ = 97.072 (1)°Needle, colorless
V = 1154.07 (19) Å30.45 × 0.33 × 0.19 mm
Bruker SMART CCD area-detector diffractometer4008 independent reflections
Radiation source: fine-focus sealed tube2079 reflections with I > 2σ(I)
graphiteRint = 0.041
φ and ω scansθmax = 25.0°, θmin = 2.5°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −6→6
Tmin = 0.913, Tmax = 0.962k = −12→18
5980 measured reflectionsl = −18→15
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.066Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.163H-atom parameters constrained
S = 1.00w = 1/[σ2(Fo2) + (0.0699P)2] where P = (Fo2 + 2Fc2)/3
4008 reflections(Δ/σ)max < 0.001
312 parametersΔρmax = 0.41 e Å3
0 restraintsΔρmin = −0.30 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
C10.9593 (7)0.7149 (3)1.0563 (3)0.0459 (9)
C21.0231 (6)0.6470 (3)0.9656 (3)0.0419 (9)
C31.1954 (7)0.5870 (3)0.9721 (3)0.0493 (10)
H31.26880.59231.03090.059*
C41.2502 (7)0.5211 (3)0.8890 (3)0.0494 (10)
C51.1403 (8)0.5127 (3)0.8020 (3)0.0535 (10)
C60.9739 (8)0.5702 (3)0.7929 (3)0.0562 (11)
H60.90310.56330.73310.067*
C70.9146 (7)0.6395 (3)0.8768 (3)0.0428 (9)
C80.7389 (7)0.7092 (3)0.8759 (2)0.0443 (9)
H80.57120.68500.88590.053*
C90.8435 (7)0.8052 (3)0.9615 (2)0.0447 (9)
H91.02610.81910.95980.054*
C100.7331 (8)0.8881 (3)0.9576 (3)0.0548 (10)
H100.76300.94631.01180.066*
C110.5952 (8)0.8810 (3)0.8797 (3)0.0629 (12)
H110.54120.93600.88060.075*
C120.5204 (8)0.7912 (3)0.7908 (3)0.0546 (11)
H120.34710.76070.78890.066*
C130.7022 (7)0.7217 (3)0.7835 (2)0.0516 (10)
H13A0.86530.74600.77190.062*
H13B0.63420.66000.73040.062*
C140.8693 (10)0.9435 (3)1.2227 (3)0.0640 (12)
C151.3895 (9)0.4010 (3)0.7757 (3)0.0738 (13)
H15A1.31180.33530.75930.089*
H15B1.55510.40070.75490.089*
C160.3455 (10)0.7706 (4)0.6349 (3)0.0699 (13)
C170.3822 (9)0.7953 (3)0.5552 (3)0.0614 (12)
C180.5931 (11)0.8560 (4)0.5573 (3)0.0960 (17)
H180.71910.88230.61080.115*
C190.6226 (14)0.8790 (5)0.4820 (4)0.126 (2)
H190.76700.92070.48480.152*
C200.4389 (15)0.8404 (5)0.4029 (4)0.1021 (19)
H200.45560.85710.35240.122*
C210.2354 (15)0.7787 (6)0.3985 (4)0.129 (3)
H210.11230.75100.34410.155*
C220.2078 (11)0.7562 (5)0.4739 (4)0.120 (2)
H220.06530.71280.46950.144*
F11.0623 (6)0.9185 (2)1.2596 (2)0.1122 (11)
F20.9669 (6)1.0015 (2)1.1873 (2)0.1166 (11)
F30.7503 (7)0.9915 (2)1.2909 (2)0.1170 (11)
N10.8220 (6)0.7880 (2)1.04998 (19)0.0438 (8)
O11.0137 (5)0.7125 (2)1.13247 (18)0.0606 (8)
O20.5759 (5)0.77960 (19)1.17672 (18)0.0603 (7)
O30.4658 (5)0.87827 (19)1.09346 (18)0.0568 (7)
O41.4169 (6)0.4573 (2)0.8761 (2)0.0683 (8)
O51.2311 (6)0.4429 (2)0.7298 (2)0.0800 (10)
O60.5276 (5)0.8156 (2)0.71026 (18)0.0612 (8)
O70.145 (5)0.763 (2)0.6537 (16)0.108 (3)0.244 (15)
O7'0.1783 (13)0.7010 (8)0.6301 (5)0.108 (3)0.756 (15)
S10.65022 (19)0.83949 (7)1.13126 (7)0.0482 (3)
U11U22U33U12U13U23
C10.039 (2)0.048 (2)0.050 (2)−0.0061 (18)0.0014 (18)0.025 (2)
C20.038 (2)0.039 (2)0.056 (2)−0.0019 (18)0.0043 (18)0.030 (2)
C30.048 (2)0.052 (2)0.053 (2)0.000 (2)0.0002 (19)0.032 (2)
C40.045 (2)0.044 (2)0.067 (3)0.002 (2)0.005 (2)0.034 (2)
C50.066 (3)0.035 (2)0.061 (3)0.007 (2)0.014 (2)0.020 (2)
C60.066 (3)0.051 (3)0.056 (3)0.007 (2)0.001 (2)0.029 (2)
C70.042 (2)0.038 (2)0.050 (2)−0.0035 (17)0.0004 (18)0.0239 (19)
C80.042 (2)0.045 (2)0.051 (2)−0.0021 (18)0.0014 (17)0.0287 (19)
C90.042 (2)0.045 (2)0.052 (2)−0.0022 (18)0.0057 (17)0.028 (2)
C100.073 (3)0.041 (2)0.058 (2)0.010 (2)0.015 (2)0.028 (2)
C110.078 (3)0.057 (3)0.075 (3)0.020 (2)0.020 (2)0.045 (3)
C120.049 (2)0.066 (3)0.066 (3)0.006 (2)0.007 (2)0.047 (2)
C130.054 (2)0.056 (3)0.051 (2)0.005 (2)0.0006 (18)0.032 (2)
C140.077 (3)0.056 (3)0.051 (3)−0.004 (3)−0.001 (2)0.022 (2)
C150.085 (3)0.053 (3)0.087 (3)0.019 (3)0.018 (3)0.030 (3)
C160.059 (3)0.090 (4)0.064 (3)−0.003 (3)0.001 (2)0.043 (3)
C170.074 (3)0.064 (3)0.047 (2)0.008 (3)0.008 (2)0.025 (2)
C180.111 (4)0.105 (4)0.069 (3)−0.026 (4)−0.008 (3)0.051 (3)
C190.154 (6)0.143 (6)0.100 (4)−0.025 (5)0.007 (4)0.087 (5)
C200.149 (6)0.111 (5)0.069 (4)0.035 (5)0.033 (4)0.054 (4)
C210.135 (6)0.183 (7)0.068 (4)−0.015 (6)−0.020 (4)0.071 (5)
C220.110 (5)0.165 (6)0.082 (4)−0.038 (4)−0.019 (3)0.075 (4)
F10.107 (2)0.084 (2)0.106 (2)−0.0041 (18)−0.0486 (18)0.0218 (18)
F20.139 (3)0.087 (2)0.103 (2)−0.0575 (19)−0.0091 (19)0.0465 (19)
F30.143 (3)0.082 (2)0.088 (2)0.006 (2)0.039 (2)−0.0010 (18)
N10.0518 (19)0.0442 (18)0.0435 (17)0.0074 (16)0.0085 (14)0.0269 (15)
O10.0642 (18)0.0707 (19)0.0566 (17)0.0096 (15)0.0040 (14)0.0384 (16)
O20.0625 (18)0.0626 (18)0.0740 (18)0.0030 (14)0.0240 (14)0.0465 (16)
O30.0490 (16)0.0614 (18)0.0709 (17)0.0112 (14)0.0095 (13)0.0386 (15)
O40.076 (2)0.0545 (18)0.078 (2)0.0220 (17)0.0068 (16)0.0306 (17)
O50.114 (3)0.063 (2)0.0711 (19)0.037 (2)0.0161 (19)0.0302 (18)
O60.0621 (18)0.0702 (19)0.0643 (17)−0.0017 (15)−0.0047 (14)0.0483 (16)
O70.111 (3)0.111 (7)0.080 (4)−0.066 (5)−0.018 (3)0.049 (5)
O7'0.111 (3)0.111 (7)0.080 (4)−0.066 (5)−0.018 (3)0.049 (5)
S10.0451 (6)0.0471 (6)0.0553 (6)−0.0005 (5)0.0072 (5)0.0271 (5)
C1—O11.211 (4)C13—H13B0.9700
C1—N11.456 (4)C14—F31.294 (5)
C1—C21.472 (5)C14—F11.313 (5)
C2—C71.403 (5)C14—F21.315 (5)
C2—C31.414 (5)C14—S11.829 (4)
C3—C41.361 (5)C15—O41.425 (5)
C3—H30.9300C15—O51.435 (5)
C4—C51.375 (5)C15—H15A0.9700
C4—O41.379 (4)C15—H15B0.9700
C5—C61.373 (5)C16—O71.14 (3)
C5—O51.377 (4)C16—O7'1.287 (9)
C6—C71.402 (5)C16—O61.328 (5)
C6—H60.9300C16—C171.464 (6)
C7—C81.521 (5)C17—C221.362 (6)
C8—C91.526 (5)C17—C181.367 (6)
C8—C131.527 (4)C18—C191.375 (6)
C8—H80.9800C18—H180.9300
C9—C101.501 (5)C19—C201.367 (8)
C9—N11.518 (4)C19—H190.9300
C9—H90.9800C20—C211.335 (8)
C10—C111.318 (5)C20—H200.9300
C10—H100.9300C21—C221.370 (7)
C11—C121.479 (6)C21—H210.9300
C11—H110.9300C22—H220.9300
C12—O61.453 (4)N1—S11.625 (3)
C12—C131.517 (5)O2—S11.422 (2)
C12—H120.9800O3—S11.420 (2)
C13—H13A0.9700
O1—C1—N1120.4 (3)H13A—C13—H13B108.2
O1—C1—C2124.1 (3)F3—C14—F1108.3 (4)
N1—C1—C2115.5 (3)F3—C14—F2108.1 (4)
C7—C2—C3121.1 (3)F1—C14—F2106.6 (4)
C7—C2—C1122.3 (3)F3—C14—S1110.0 (3)
C3—C2—C1116.5 (3)F1—C14—S1112.2 (3)
C4—C3—C2117.7 (3)F2—C14—S1111.4 (3)
C4—C3—H3121.2O4—C15—O5107.9 (3)
C2—C3—H3121.2O4—C15—H15A110.1
C3—C4—C5121.2 (4)O5—C15—H15A110.1
C3—C4—O4128.8 (3)O4—C15—H15B110.1
C5—C4—O4110.0 (4)O5—C15—H15B110.1
C6—C5—C4122.9 (4)H15A—C15—H15B108.4
C6—C5—O5127.3 (4)O7—C16—O7'44.0 (14)
C4—C5—O5109.8 (3)O7—C16—O6114.1 (11)
C5—C6—C7117.6 (3)O7'—C16—O6120.4 (4)
C5—C6—H6121.2O7—C16—C17118.6 (12)
C7—C6—H6121.2O7'—C16—C17124.5 (5)
C6—C7—C2119.5 (3)O6—C16—C17114.2 (4)
C6—C7—C8122.4 (3)C22—C17—C18117.0 (4)
C2—C7—C8118.0 (3)C22—C17—C16120.8 (5)
C7—C8—C9107.3 (3)C18—C17—C16122.2 (4)
C7—C8—C13115.1 (3)C17—C18—C19121.3 (5)
C9—C8—C13111.2 (3)C17—C18—H18119.4
C7—C8—H8107.7C19—C18—H18119.4
C9—C8—H8107.7C20—C19—C18119.8 (6)
C13—C8—H8107.7C20—C19—H19120.1
C10—C9—N1116.7 (3)C18—C19—H19120.1
C10—C9—C8113.9 (3)C21—C20—C19119.6 (5)
N1—C9—C8106.5 (3)C21—C20—H20120.2
C10—C9—H9106.3C19—C20—H20120.2
N1—C9—H9106.3C20—C21—C22120.1 (6)
C8—C9—H9106.3C20—C21—H21119.9
C11—C10—C9122.0 (4)C22—C21—H21119.9
C11—C10—H10119.0C17—C22—C21122.1 (6)
C9—C10—H10119.0C17—C22—H22118.9
C10—C11—C12124.4 (4)C21—C22—H22118.9
C10—C11—H11117.8C1—N1—C9114.8 (3)
C12—C11—H11117.8C1—N1—S1119.7 (2)
O6—C12—C11108.2 (3)C9—N1—S1125.4 (2)
O6—C12—C13108.5 (3)C4—O4—C15105.8 (3)
C11—C12—C13111.4 (3)C5—O5—C15105.8 (3)
O6—C12—H12109.6C16—O6—C12118.9 (3)
C11—C12—H12109.6O3—S1—O2120.49 (17)
C13—C12—H12109.6O3—S1—N1109.04 (14)
C12—C13—C8110.1 (3)O2—S1—N1110.45 (15)
C12—C13—H13A109.6O3—S1—C14105.4 (2)
C8—C13—H13A109.6O2—S1—C14105.50 (19)
C12—C13—H13B109.6N1—S1—C14104.7 (2)
C8—C13—H13B109.6
O1—C1—C2—C7166.9 (4)C22—C17—C18—C192.2 (9)
N1—C1—C2—C7−13.0 (5)C16—C17—C18—C19−179.4 (5)
O1—C1—C2—C3−11.4 (5)C17—C18—C19—C20−0.3 (10)
N1—C1—C2—C3168.7 (3)C18—C19—C20—C21−1.7 (10)
C7—C2—C3—C4−0.7 (5)C19—C20—C21—C221.7 (11)
C1—C2—C3—C4177.6 (3)C18—C17—C22—C21−2.3 (9)
C2—C3—C4—C5−0.5 (6)C16—C17—C22—C21179.3 (6)
C2—C3—C4—O4177.5 (3)C20—C21—C22—C170.3 (11)
C3—C4—C5—C61.1 (6)O1—C1—N1—C9160.2 (3)
O4—C4—C5—C6−177.2 (3)C2—C1—N1—C9−19.9 (4)
C3—C4—C5—O5178.6 (3)O1—C1—N1—S1−23.1 (5)
O4—C4—C5—O50.3 (4)C2—C1—N1—S1156.9 (3)
C4—C5—C6—C7−0.5 (6)C10—C9—N1—C1−172.6 (3)
O5—C5—C6—C7−177.5 (4)C8—C9—N1—C159.0 (4)
C5—C6—C7—C2−0.7 (5)C10—C9—N1—S110.9 (5)
C5—C6—C7—C8178.2 (3)C8—C9—N1—S1−117.6 (3)
C3—C2—C7—C61.3 (5)C3—C4—O4—C15176.5 (4)
C1—C2—C7—C6−176.9 (3)C5—C4—O4—C15−5.4 (4)
C3—C2—C7—C8−177.7 (3)O5—C15—O4—C48.3 (4)
C1—C2—C7—C84.1 (5)C6—C5—O5—C15−177.7 (4)
C6—C7—C8—C9−143.5 (3)C4—C5—O5—C154.9 (4)
C2—C7—C8—C935.4 (4)O4—C15—O5—C5−8.2 (4)
C6—C7—C8—C13−19.3 (5)O7—C16—O6—C1243.6 (19)
C2—C7—C8—C13159.7 (3)O7'—C16—O6—C12−5.8 (8)
C7—C8—C9—C10165.4 (3)C17—C16—O6—C12−175.5 (3)
C13—C8—C9—C1038.8 (4)C11—C12—O6—C16−140.0 (4)
C7—C8—C9—N1−64.5 (3)C13—C12—O6—C1699.0 (4)
C13—C8—C9—N1168.9 (3)C1—N1—S1—O3−158.2 (3)
N1—C9—C10—C11−136.4 (4)C9—N1—S1—O318.2 (3)
C8—C9—C10—C11−11.5 (5)C1—N1—S1—O2−23.6 (3)
C9—C10—C11—C123.9 (7)C9—N1—S1—O2152.7 (3)
C10—C11—C12—O6−143.0 (4)C1—N1—S1—C1489.5 (3)
C10—C11—C12—C13−23.8 (6)C9—N1—S1—C14−94.2 (3)
O6—C12—C13—C8169.2 (3)F3—C14—S1—O363.8 (4)
C11—C12—C13—C850.1 (4)F1—C14—S1—O3−175.5 (3)
C7—C8—C13—C12179.0 (3)F2—C14—S1—O3−56.1 (4)
C9—C8—C13—C12−58.8 (4)F3—C14—S1—O2−64.7 (4)
O7—C16—C17—C22−39.5 (19)F1—C14—S1—O256.0 (4)
O7'—C16—C17—C2212.2 (10)F2—C14—S1—O2175.4 (3)
O6—C16—C17—C22−178.6 (5)F3—C14—S1—N1178.7 (3)
O7—C16—C17—C18142.1 (18)F1—C14—S1—N1−60.6 (4)
O7'—C16—C17—C18−166.1 (8)F2—C14—S1—N158.8 (4)
O6—C16—C17—C183.0 (7)
D—H···AD—HH···AD···AD—H···A
C3—H3···O4i0.932.513.341 (5)149
C15—H15A···O2ii0.972.483.202 (5)131
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C3—H3⋯O4i0.932.513.341 (5)149
C15—H15A⋯O2ii0.972.483.202 (5)131

Symmetry codes: (i) ; (ii) .

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