Literature DB >> 21523035

5,5'-Bis[(2,2,2-trifluoro-eth-oxy)meth-yl]-2,2'-bipyridine.

Norman Lu1, Wen-Han Tu, Wei-Hsuan Chang, Zong-Wei Wu, Han-Chang Su.   

Abstract

The complete molecule of the title compound, C(16)H(14)F(6)N(2)O(2), is generated by crystallographic inversion symmetry, which results in two short intramolecular C-H⋯N hydrogen-bond contacts per molecule. In the crystal, aromatic π-π stacking [centroid-centroid distance = 3.457 (2) Å] and weak C-H⋯π inter-actions occur. A short H⋯H [2.32 (3) Å] contact is present.

Entities:  

Year:  2011        PMID: 21523035      PMCID: PMC3051693          DOI: 10.1107/S1600536811000730

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related structures and background to the anti-planar geometry of bpy, see: Lu, Tu, Wu et al. (2010 ▶); Iyer et al. (2005 ▶); Heirtzler et al. (2002 ▶); Maury et al. (2001 ▶); Vogtle et al. (1990 ▶). For background to the bipyridine (bpy) ligand, see: Bain et al. (1989 ▶); Chambron & Sauvage (1986 ▶, 1987 ▶); Grätzel (2001 ▶); Haga et al. (2000 ▶); Lu, Tu, Hou et al. (2010 ▶); Lu, Tu, Wen et al. (2010 ▶); Lu et al. (2007 ▶). For C—H⋯H—C inter­actions, see: Wolstenholme & Cameron (2006 ▶).

Experimental

Crystal data

C16H14F6N2O2 M = 380.29 Triclinic, a = 4.6573 (2) Å b = 5.6842 (3) Å c = 15.7273 (8) Å α = 94.298 (3)° β = 98.473 (3)° γ = 105.689 (4)° V = 393.57 (3) Å3 Z = 1 Mo Kα radiation μ = 0.15 mm−1 T = 100 K 0.2 × 0.14 × 0.12 mm

Data collection

Bruker APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2008 ▶) T min = 0.664, T max = 0.746 6627 measured reflections 1577 independent reflections 1348 reflections with I > 2σ(I) R int = 0.024

Refinement

R[F 2 > 2σ(F 2)] = 0.031 wR(F 2) = 0.104 S = 1.12 1577 reflections 146 parameters All H-atom parameters refined Δρmax = 0.29 e Å−3 Δρmin = −0.27 e Å−3 Data collection: APEX2 (Bruker, 2010 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536811000730/fk2030sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536811000730/fk2030Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C16H14F6N2O2Z = 1
Mr = 380.29F(000) = 194
Triclinic, P1Dx = 1.605 Mg m3Dm = 1.53 Mg m3Dm measured by w/v
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 4.6573 (2) ÅCell parameters from 3201 reflections
b = 5.6842 (3) Åθ = 2.6–27.1°
c = 15.7273 (8) ŵ = 0.15 mm1
α = 94.298 (3)°T = 100 K
β = 98.473 (3)°Prism, colourless
γ = 105.689 (4)°0.2 × 0.14 × 0.12 mm
V = 393.57 (3) Å3
Bruker APEXII CCD area-detector diffractometer1348 reflections with I > 2σ(I)
graphiteRint = 0.024
φ and ω scansθmax = 26.4°, θmin = 1.3°
Absorption correction: multi-scan (SADABS; Bruker, 2008)h = −5→5
Tmin = 0.664, Tmax = 0.746k = −7→7
6627 measured reflectionsl = −19→19
1577 independent reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.031Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.104All H-atom parameters refined
S = 1.12w = 1/[σ2(Fo2) + (0.0595P)2 + 0.094P] where P = (Fo2 + 2Fc2)/3
1577 reflections(Δ/σ)max < 0.001
146 parametersΔρmax = 0.29 e Å3
0 restraintsΔρmin = −0.27 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
F11.8989 (2)1.22574 (16)0.98212 (6)0.0271 (3)
F21.8270 (2)1.35589 (16)0.85765 (6)0.0299 (3)
F31.4537 (2)1.23169 (17)0.92410 (6)0.0294 (3)
O1.4170 (2)0.88799 (19)0.79273 (7)0.0225 (3)
N0.6609 (3)0.3432 (2)0.58189 (8)0.0173 (3)
C11.1096 (3)0.6201 (3)0.67039 (9)0.0160 (3)
C20.8935 (3)0.3918 (3)0.64727 (10)0.0174 (3)
C30.6289 (3)0.5286 (2)0.53652 (8)0.0144 (3)
C40.8268 (3)0.7658 (3)0.55708 (10)0.0181 (3)
C51.0718 (3)0.8098 (3)0.62300 (10)0.0189 (3)
C61.3693 (3)0.6554 (3)0.74291 (10)0.0187 (3)
C71.6509 (4)0.9271 (3)0.86434 (10)0.0214 (4)
C81.7066 (3)1.1854 (3)0.90685 (10)0.0204 (3)
H20.903 (4)0.259 (4)0.6804 (12)0.025 (5)*
H40.789 (4)0.887 (3)0.5248 (11)0.023 (4)*
H51.215 (4)0.970 (4)0.6343 (12)0.029 (5)*
H6A1.556 (4)0.658 (3)0.7197 (11)0.021 (4)*
H6B1.327 (4)0.527 (3)0.7796 (12)0.024 (4)*
H7A1.594 (4)0.813 (4)0.9065 (12)0.026 (5)*
H7B1.843 (4)0.916 (3)0.8461 (12)0.028 (5)*
U11U22U33U12U13U23
F10.0318 (5)0.0225 (5)0.0219 (5)0.0071 (4)−0.0072 (4)−0.0029 (4)
F20.0381 (6)0.0217 (5)0.0283 (5)0.0050 (4)0.0051 (4)0.0072 (4)
F30.0266 (5)0.0305 (5)0.0318 (5)0.0125 (4)0.0036 (4)−0.0048 (4)
O0.0264 (6)0.0187 (5)0.0205 (6)0.0106 (4)−0.0067 (5)−0.0044 (4)
N0.0208 (6)0.0119 (6)0.0188 (6)0.0044 (5)0.0024 (5)0.0025 (5)
C10.0161 (7)0.0164 (7)0.0168 (7)0.0063 (6)0.0046 (6)−0.0002 (6)
C20.0223 (8)0.0126 (7)0.0182 (7)0.0065 (6)0.0031 (6)0.0027 (5)
C30.0162 (7)0.0125 (7)0.0156 (7)0.0044 (5)0.0054 (6)0.0023 (5)
C40.0208 (7)0.0133 (7)0.0198 (7)0.0035 (6)0.0026 (6)0.0055 (6)
C50.0187 (7)0.0139 (7)0.0217 (8)0.0006 (6)0.0028 (6)0.0022 (6)
C60.0192 (7)0.0156 (7)0.0210 (8)0.0061 (6)0.0015 (6)−0.0002 (6)
C70.0236 (8)0.0205 (8)0.0188 (8)0.0084 (6)−0.0033 (7)0.0004 (6)
C80.0212 (8)0.0209 (8)0.0183 (7)0.0074 (6)−0.0008 (6)0.0015 (6)
F1—C81.3386 (17)C3—C41.396 (2)
F2—C81.3411 (18)C3—C3i1.481 (3)
F3—C81.3347 (18)C4—C51.377 (2)
O—C71.4053 (18)C4—H40.926 (19)
O—C61.4304 (17)C5—H50.96 (2)
N—C21.3322 (19)C6—H6A0.990 (19)
N—C31.3446 (18)C6—H6B0.960 (19)
C1—C51.390 (2)C7—C81.505 (2)
C1—C21.394 (2)C7—H7A0.98 (2)
C1—C61.494 (2)C7—H7B1.00 (2)
C2—H20.96 (2)
C7—O—C6111.24 (11)O—C6—H6A108.1 (10)
C2—N—C3117.65 (12)C1—C6—H6A110.2 (10)
C5—C1—C2117.07 (14)O—C6—H6B109.2 (11)
C5—C1—C6122.24 (13)C1—C6—H6B110.7 (11)
C2—C1—C6120.69 (13)H6A—C6—H6B109.9 (14)
N—C2—C1124.41 (13)O—C7—C8107.27 (12)
N—C2—H2115.6 (11)O—C7—H7A111.5 (11)
C1—C2—H2119.9 (11)C8—C7—H7A108.4 (11)
N—C3—C4122.04 (13)O—C7—H7B111.4 (10)
N—C3—C3i117.10 (15)C8—C7—H7B107.4 (11)
C4—C3—C3i120.85 (15)H7A—C7—H7B110.6 (16)
C5—C4—C3119.25 (13)F3—C8—F1107.01 (12)
C5—C4—H4122.6 (11)F3—C8—F2106.48 (12)
C3—C4—H4118.2 (11)F1—C8—F2107.15 (12)
C4—C5—C1119.49 (14)F3—C8—C7112.67 (13)
C4—C5—H5119.0 (11)F1—C8—C7110.74 (12)
C1—C5—H5121.5 (11)F2—C8—C7112.46 (13)
O—C6—C1108.60 (11)
C3—N—C2—C1−1.6 (2)C6—C1—C5—C4−179.74 (13)
C5—C1—C2—N1.9 (2)C7—O—C6—C1177.45 (12)
C6—C1—C2—N−177.87 (13)C5—C1—C6—O41.49 (19)
C2—N—C3—C4−1.1 (2)C2—C1—C6—O−138.72 (14)
C2—N—C3—C3i179.43 (14)C6—O—C7—C8174.02 (13)
N—C3—C4—C53.4 (2)O—C7—C8—F352.09 (17)
C3i—C3—C4—C5−177.17 (15)O—C7—C8—F1171.89 (12)
C3—C4—C5—C1−3.0 (2)O—C7—C8—F2−68.27 (17)
C2—C1—C5—C40.5 (2)
Cg is the centroid of the N,C1–C5 ring.
D—H···AD—HH···AD···AD—H···A
C4—H4···Ni0.925 (17)2.464 (18)2.809 (2)102.3 (12)
C6—H6A···Cgii0.990 (19)2.593.5089 (16)155
hpd(Å)hcd(Å)sa(°)
C6-H6A···πiii2.57 (2)2.59 (2)6.4 (2)
Table 1

Hydrogen-bond geometry (Å, °)

Cg is the centroid of the N,C1–C5 ring.

D—H⋯AD—HH⋯ADAD—H⋯A
C4—H4⋯Ni0.925 (17)2.464 (18)2.809 (2)102.3 (12)
C6—H6ACgii0.990 (19)2.593.5089 (16)155

Symmetry codes: (i) ; (ii) .

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1.  Photoelectrochemical cells.

Authors:  M Grätzel
Journal:  Nature       Date:  2001-11-15       Impact factor: 49.962

2.  4,4'-Bis(2,2,2-trifluoroethoxymethyl)-2,2'-bipyridine.

Authors:  Norman Lu; Wen-Han Tu; Zong-Wei Wu; Yuh-Sheng Wen; Ling-Kang Liu
Journal:  Acta Crystallogr C       Date:  2010-05-12       Impact factor: 1.172

3.  Packing effects in 4,4'-bis(4-hydroxybutyl)-2,2'-bipyridine and 4,4'-bis(4-bromobutyl)-2,2'-bipyridine.

Authors:  Vijay Mahadevan Iyer; Helen Stoeckli-Evans; Anthony D'Aléo; Luisa De Cola; Peter Belser
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4.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

5.  Comparative study of weak interactions in molecular crystals: H-H bonds vs hydrogen bonds.

Authors:  David J Wolstenholme; T Stanley Cameron
Journal:  J Phys Chem A       Date:  2006-07-20       Impact factor: 2.781

  5 in total

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