| Literature DB >> 21523024 |
Mohamed Ziaulla, M N Manjunatha, Ravish Sankolli, K R Nagasundara, Noor Shahina Begum.
Abstract
In the cation of the title compound, C(14)H(13)N(2)S(+)·Br(-), the essentially planar benzimidazole system (r.m.s. deviation = 0.0082 Å) is substituted with a 4-methyl-sulfanylphenyl ring. The dihedral angle between the benzimidazole system and the 4-methyl-sulfanylphenyl ring is 2.133 (2)°. The crystal structure is characterized by strong and highly directional inter-molecular N-H⋯Br hydrogen bonds involving the bromide ion. Moreover, C-H⋯S inter-actions result in chains of mol-ecules along the c axis. The supra-molecular assembly is further stabilized by π-π stacking inter-actions between the benzimidazole system and 4-methyl-sulfanylphenyl rings [centroid-centroid distance = 3.477 (4) Å].Entities:
Year: 2011 PMID: 21523024 PMCID: PMC3051663 DOI: 10.1107/S1600536811000146
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C14H13N2S+·Br− | |
| Monoclinic, | Mo |
| Hall symbol: -P 2ybc | Cell parameters from 3009 reflections |
| θ = 1.7–27.0° | |
| µ = 3.11 mm−1 | |
| β = 100.113 (2)° | Block, yellow |
| 0.20 × 0.18 × 0.16 mm | |
| Bruker SMART APEX CCD detector diffractometer | 3009 independent reflections |
| Radiation source: Enhance (Mo) X-ray Source | 2273 reflections with |
| graphite | |
| ω scans | θmax = 27.0°, θmin = 1.7° |
| Absorption correction: multi-scan Bruker Kappa | |
| 23823 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 3009 reflections | (Δ/σ)max = 0.001 |
| 215 parameters | Δρmax = 0.35 e Å−3 |
| 0 restraints | Δρmin = −0.29 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| Br1 | 0.27225 (4) | 0.295277 (10) | 0.33608 (2) | 0.04982 (10) | |
| S1 | 0.57379 (16) | −0.00128 (3) | 0.21720 (8) | 0.0710 (2) | |
| N1 | 0.6485 (4) | 0.28057 (8) | 0.13508 (19) | 0.0421 (5) | |
| N2 | 0.9186 (4) | 0.25577 (8) | 0.01982 (17) | 0.0408 (4) | |
| C1 | 0.9109 (4) | 0.31328 (10) | 0.0161 (2) | 0.0415 (5) | |
| C2 | 1.0437 (5) | 0.35189 (11) | −0.0424 (2) | 0.0555 (6) | |
| C3 | 0.9910 (6) | 0.40696 (12) | −0.0233 (3) | 0.0644 (7) | |
| C4 | 0.8149 (6) | 0.42307 (12) | 0.0504 (3) | 0.0659 (8) | |
| C5 | 0.6847 (5) | 0.38481 (11) | 0.1084 (3) | 0.0555 (6) | |
| C6 | 0.7381 (4) | 0.32913 (10) | 0.0906 (2) | 0.0430 (5) | |
| C7 | 0.7610 (4) | 0.23676 (9) | 0.09243 (19) | 0.0387 (5) | |
| C8 | 0.7198 (4) | 0.17861 (9) | 0.1213 (2) | 0.0391 (5) | |
| C9 | 0.5449 (5) | 0.16389 (11) | 0.1960 (2) | 0.0516 (6) | |
| C10 | 0.5058 (5) | 0.10930 (11) | 0.2220 (2) | 0.0558 (6) | |
| C11 | 0.6392 (5) | 0.06710 (10) | 0.1762 (2) | 0.0453 (5) | |
| C12 | 0.8139 (6) | 0.08164 (11) | 0.1013 (3) | 0.0586 (7) | |
| C13 | 0.8530 (5) | 0.13648 (11) | 0.0746 (3) | 0.0548 (7) | |
| C14 | 0.7734 (8) | −0.04379 (14) | 0.1398 (4) | 0.0721 (9) | |
| H1N | 0.562 (5) | 0.2802 (10) | 0.181 (2) | 0.042 (7)* | |
| H9 | 0.464 (5) | 0.1907 (12) | 0.233 (2) | 0.062 (8)* | |
| H2N | 0.991 (5) | 0.2357 (11) | −0.017 (2) | 0.049 (8)* | |
| H12 | 0.909 (5) | 0.0539 (11) | 0.070 (2) | 0.065 (8)* | |
| H14C | 0.736 (6) | −0.0776 (16) | 0.159 (3) | 0.086 (11)* | |
| H14B | 0.947 (7) | −0.0359 (13) | 0.169 (3) | 0.090 (11)* | |
| H5 | 0.567 (5) | 0.3946 (12) | 0.163 (2) | 0.075 (9)* | |
| H4 | 0.781 (6) | 0.4619 (13) | 0.063 (3) | 0.085 (10)* | |
| H2 | 1.159 (5) | 0.3398 (11) | −0.092 (2) | 0.058 (7)* | |
| H13 | 0.975 (5) | 0.1462 (12) | 0.022 (3) | 0.079 (9)* | |
| H10 | 0.389 (5) | 0.0996 (11) | 0.276 (2) | 0.064 (7)* | |
| H3 | 1.080 (5) | 0.4350 (12) | −0.060 (2) | 0.070 (8)* | |
| H14A | 0.736 (6) | −0.0374 (14) | 0.054 (3) | 0.097 (12)* |
| Br1 | 0.05371 (15) | 0.05390 (17) | 0.04775 (15) | 0.00057 (11) | 0.02515 (10) | 0.00017 (11) |
| S1 | 0.0965 (6) | 0.0390 (4) | 0.0891 (5) | −0.0055 (3) | 0.0480 (4) | 0.0060 (3) |
| N1 | 0.0446 (11) | 0.0397 (11) | 0.0476 (11) | −0.0021 (8) | 0.0233 (9) | −0.0012 (9) |
| N2 | 0.0441 (10) | 0.0396 (11) | 0.0436 (11) | −0.0006 (9) | 0.0212 (9) | −0.0029 (9) |
| C1 | 0.0442 (12) | 0.0399 (12) | 0.0414 (12) | −0.0043 (10) | 0.0105 (10) | −0.0003 (10) |
| C2 | 0.0593 (16) | 0.0521 (16) | 0.0598 (15) | −0.0093 (12) | 0.0233 (13) | 0.0045 (13) |
| C3 | 0.0741 (19) | 0.0474 (16) | 0.0755 (18) | −0.0129 (14) | 0.0231 (15) | 0.0080 (14) |
| C4 | 0.077 (2) | 0.0386 (16) | 0.082 (2) | −0.0056 (13) | 0.0140 (16) | −0.0001 (14) |
| C5 | 0.0626 (16) | 0.0411 (15) | 0.0655 (16) | 0.0024 (12) | 0.0185 (13) | −0.0077 (13) |
| C6 | 0.0433 (12) | 0.0414 (13) | 0.0450 (12) | −0.0031 (10) | 0.0099 (9) | −0.0011 (10) |
| C7 | 0.0380 (11) | 0.0407 (13) | 0.0392 (11) | −0.0013 (10) | 0.0121 (9) | 0.0001 (10) |
| C8 | 0.0400 (12) | 0.0394 (13) | 0.0392 (11) | −0.0015 (10) | 0.0109 (9) | 0.0009 (10) |
| C9 | 0.0621 (16) | 0.0380 (13) | 0.0626 (15) | 0.0046 (11) | 0.0331 (13) | 0.0005 (12) |
| C10 | 0.0620 (16) | 0.0484 (15) | 0.0665 (16) | −0.0018 (12) | 0.0377 (13) | 0.0054 (13) |
| C11 | 0.0512 (13) | 0.0386 (13) | 0.0483 (13) | −0.0036 (10) | 0.0147 (10) | 0.0016 (10) |
| C12 | 0.0705 (18) | 0.0389 (15) | 0.0762 (18) | 0.0019 (12) | 0.0400 (15) | −0.0019 (13) |
| C13 | 0.0615 (16) | 0.0436 (15) | 0.0689 (16) | 0.0011 (12) | 0.0377 (14) | −0.0004 (12) |
| C14 | 0.091 (3) | 0.0407 (18) | 0.089 (3) | 0.0024 (16) | 0.028 (2) | −0.0003 (16) |
| S1—C11 | 1.754 (2) | C5—C6 | 1.388 (3) |
| S1—C14 | 1.791 (4) | C5—H5 | 0.97 (3) |
| N1—C7 | 1.335 (3) | C7—C8 | 1.457 (3) |
| N1—C6 | 1.381 (3) | C8—C13 | 1.384 (3) |
| N1—H1N | 0.74 (3) | C8—C9 | 1.390 (3) |
| N2—C7 | 1.334 (3) | C9—C10 | 1.365 (4) |
| N2—C1 | 1.382 (3) | C9—H9 | 0.91 (3) |
| N2—H2N | 0.77 (3) | C10—C11 | 1.382 (3) |
| C1—C6 | 1.386 (3) | C10—H10 | 0.96 (3) |
| C1—C2 | 1.390 (3) | C11—C12 | 1.389 (3) |
| C2—C3 | 1.376 (4) | C12—C13 | 1.373 (4) |
| C2—H2 | 0.93 (3) | C12—H12 | 0.94 (3) |
| C3—C4 | 1.395 (4) | C13—H13 | 0.97 (3) |
| C3—H3 | 0.95 (3) | C14—H14C | 0.87 (4) |
| C4—C5 | 1.373 (4) | C14—H14B | 0.94 (3) |
| C4—H4 | 0.96 (3) | C14—H14A | 0.94 (3) |
| C11—S1—C14 | 104.57 (15) | N2—C7—C8 | 126.29 (19) |
| C7—N1—C6 | 109.73 (19) | N1—C7—C8 | 125.82 (18) |
| C7—N1—H1N | 127.0 (19) | C13—C8—C9 | 118.2 (2) |
| C6—N1—H1N | 123.0 (19) | C13—C8—C7 | 120.93 (19) |
| C7—N2—C1 | 109.94 (18) | C9—C8—C7 | 120.9 (2) |
| C7—N2—H2N | 121.6 (19) | C10—C9—C8 | 120.6 (2) |
| C1—N2—H2N | 128.3 (19) | C10—C9—H9 | 118.9 (17) |
| N2—C1—C6 | 106.04 (19) | C8—C9—H9 | 120.3 (17) |
| N2—C1—C2 | 131.7 (2) | C9—C10—C11 | 121.5 (2) |
| C6—C1—C2 | 122.2 (2) | C9—C10—H10 | 120.0 (16) |
| C3—C2—C1 | 115.9 (3) | C11—C10—H10 | 118.4 (16) |
| C3—C2—H2 | 124.1 (16) | C10—C11—C12 | 118.1 (2) |
| C1—C2—H2 | 120.0 (16) | C10—C11—S1 | 117.15 (18) |
| C2—C3—C4 | 122.1 (3) | C12—C11—S1 | 124.79 (19) |
| C2—C3—H3 | 119.2 (17) | C13—C12—C11 | 120.6 (2) |
| C4—C3—H3 | 118.7 (17) | C13—C12—H12 | 119.2 (17) |
| C5—C4—C3 | 121.9 (3) | C11—C12—H12 | 120.2 (17) |
| C5—C4—H4 | 117.2 (19) | C12—C13—C8 | 121.1 (2) |
| C3—C4—H4 | 121.0 (19) | C12—C13—H13 | 120.1 (17) |
| C4—C5—C6 | 116.5 (3) | C8—C13—H13 | 118.9 (18) |
| C4—C5—H5 | 123.9 (18) | S1—C14—H14C | 104 (2) |
| C6—C5—H5 | 119.5 (18) | S1—C14—H14B | 111 (2) |
| N1—C6—C1 | 106.4 (2) | H14C—C14—H14B | 111 (3) |
| N1—C6—C5 | 132.2 (2) | S1—C14—H14A | 110 (2) |
| C1—C6—C5 | 121.4 (2) | H14C—C14—H14A | 112 (3) |
| N2—C7—N1 | 107.9 (2) | H14B—C14—H14A | 109 (3) |
| C7—N2—C1—C6 | −0.2 (3) | C6—N1—C7—C8 | 178.60 (19) |
| C7—N2—C1—C2 | 177.8 (3) | N2—C7—C8—C13 | 1.4 (3) |
| N2—C1—C2—C3 | −178.5 (2) | N1—C7—C8—C13 | −178.0 (2) |
| C6—C1—C2—C3 | −0.8 (4) | N2—C7—C8—C9 | −178.3 (2) |
| C1—C2—C3—C4 | 0.0 (4) | N1—C7—C8—C9 | 2.2 (3) |
| C2—C3—C4—C5 | 0.3 (5) | C13—C8—C9—C10 | −0.2 (4) |
| C3—C4—C5—C6 | 0.3 (4) | C7—C8—C9—C10 | 179.5 (2) |
| C7—N1—C6—C1 | 0.8 (3) | C8—C9—C10—C11 | 0.6 (4) |
| C7—N1—C6—C5 | −179.2 (3) | C9—C10—C11—C12 | −0.7 (4) |
| N2—C1—C6—N1 | −0.4 (2) | C9—C10—C11—S1 | 179.5 (2) |
| C2—C1—C6—N1 | −178.6 (2) | C14—S1—C11—C10 | 178.8 (2) |
| N2—C1—C6—C5 | 179.6 (2) | C14—S1—C11—C12 | −1.0 (3) |
| C2—C1—C6—C5 | 1.4 (4) | C10—C11—C12—C13 | 0.4 (4) |
| C4—C5—C6—N1 | 178.9 (3) | S1—C11—C12—C13 | −179.8 (2) |
| C4—C5—C6—C1 | −1.1 (4) | C11—C12—C13—C8 | −0.1 (5) |
| C1—N2—C7—N1 | 0.7 (3) | C9—C8—C13—C12 | −0.1 (4) |
| C1—N2—C7—C8 | −178.83 (19) | C7—C8—C13—C12 | −179.8 (2) |
| C6—N1—C7—N2 | −0.9 (3) |
| H··· | ||||
| N1—H1N···Br1 | 0.74 (2) | 2.51 (2) | 3.247 (2) | 171 (2) |
| N2—H2N···Br1i | 0.77 (3) | 2.50 (2) | 3.231 (2) | 159 |
| C5—H5···S1ii | 0.97 (3) | 2.98 (3) | 3.736 (3) | 135 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N1—H1 | 0.74 (2) | 2.51 (2) | 3.247 (2) | 171 (2) |
| N2—H2 | 0.77 (3) | 2.50 (2) | 3.231 (2) | 159 |
| C5—H5⋯S1ii | 0.97 (3) | 2.98 (3) | 3.736 (3) | 135 |
Symmetry codes: (i) ; (ii) .