Literature DB >> 21522980

N-Cyclo-hexyl-2-(5-meth-oxy-1H-indol-3-yl)-2-oxoacetamide.

Jing Liu, Yong-Feng Liu, Shi Zhang, Ying Gao, Hong Chen.   

Abstract

In the title compound, C(17)H(20)N(2)O(3), the cyclo-hexane ring adopts a chair conformation. In the crystal, inter-molecular N-H⋯O hydrogen bonds link the mol-ecules into layers parallel to the ac plane.

Entities:  

Year:  2011        PMID: 21522980      PMCID: PMC3051520          DOI: 10.1107/S1600536810054656

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological activity of indole derivatives, see: Souli et al. (2008 ▶); Chai et al. (2006 ▶); Radwan et al. (2007 ▶); Karthikeyan et al., (2009 ▶). For details of the synthesis, see: Bacher et al. (2001 ▶). For similar structures, see: Feng et al. (2008 ▶); Sonar et al. (2006 ▶).

Experimental

Crystal data

C17H20N2O3 M = 300.35 Monoclinic, a = 5.083 (3) Å b = 27.336 (13) Å c = 5.220 (3) Å β = 91.977 (12)° V = 724.9 (6) Å3 Z = 2 Mo Kα radiation μ = 0.10 mm−1 T = 113 K 0.20 × 0.18 × 0.10 mm

Data collection

Rigaku Saturn CCD area-detector diffractometer Absorption correction: multi-scan (CrystalClear; Rigaku, 2005 ▶) T min = 0.981, T max = 0.991 7342 measured reflections 1764 independent reflections 1569 reflections with I > 2σ(I) R int = 0.042

Refinement

R[F 2 > 2σ(F 2)] = 0.035 wR(F 2) = 0.076 S = 1.02 1764 reflections 208 parameters 1 restraint H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.23 e Å−3 Δρmin = −0.18 e Å−3 Data collection: CrystalClear (Rigaku, 2005 ▶); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: XP in SHELXTL; software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810054656/cv5025sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810054656/cv5025Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C17H20N2O3F(000) = 320
Mr = 300.35Dx = 1.376 Mg m3
Monoclinic, P21Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ybCell parameters from 2636 reflections
a = 5.083 (3) Åθ = 1.5–27.9°
b = 27.336 (13) ŵ = 0.10 mm1
c = 5.220 (3) ÅT = 113 K
β = 91.977 (12)°Prism, colourless
V = 724.9 (6) Å30.20 × 0.18 × 0.10 mm
Z = 2
Rigaku Saturn CCD area-detector diffractometer1764 independent reflections
Radiation source: rotating anode1569 reflections with I > 2σ(I)
multilayerRint = 0.042
Detector resolution: 14.63 pixels mm-1θmax = 27.9°, θmin = 1.5°
ω and φ scansh = −6→6
Absorption correction: multi-scan (CrystalClear; Rigaku, 2005)k = −36→31
Tmin = 0.981, Tmax = 0.991l = −6→6
7342 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.035Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.076H atoms treated by a mixture of independent and constrained refinement
S = 1.02w = 1/[σ2(Fo2) + (0.0439P)2] where P = (Fo2 + 2Fc2)/3
1764 reflections(Δ/σ)max = 0.003
208 parametersΔρmax = 0.23 e Å3
1 restraintΔρmin = −0.18 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. Along with the meaningless absolute structure parameter value (and s.u. value) obtained from any refinement with Friedel pairs, as justification of the merging of Friedel-pair data.
xyzUiso*/Ueq
O1−0.1844 (3)0.03318 (6)0.3071 (3)0.0242 (4)
O2−0.1506 (3)0.20016 (5)0.8241 (3)0.0181 (3)
O30.3519 (3)0.28545 (6)0.8311 (3)0.0209 (4)
N10.4663 (4)0.19176 (7)0.2050 (3)0.0175 (4)
N2−0.0791 (4)0.29907 (6)0.8997 (3)0.0167 (4)
C1−0.3621 (4)0.03287 (9)0.5127 (5)0.0241 (5)
H1A−0.26270.03600.67610.036*
H1B−0.46070.00210.51060.036*
H1C−0.48510.06030.49270.036*
C2−0.0281 (4)0.07411 (8)0.2854 (4)0.0191 (5)
C30.1505 (4)0.07156 (8)0.0851 (4)0.0207 (5)
H30.15080.0435−0.02230.025*
C40.3242 (4)0.10905 (8)0.0430 (4)0.0185 (4)
H40.44460.1075−0.09200.022*
C50.3169 (4)0.14924 (7)0.2052 (4)0.0158 (4)
C60.3895 (4)0.22142 (8)0.3936 (4)0.0182 (4)
H60.46320.25260.43190.022*
C70.1850 (4)0.19958 (8)0.5251 (4)0.0147 (4)
C80.1372 (4)0.15268 (8)0.4031 (4)0.0153 (4)
C9−0.0386 (4)0.11418 (8)0.4453 (4)0.0170 (4)
H9−0.16030.11560.57920.020*
C100.0403 (4)0.22048 (7)0.7283 (4)0.0150 (4)
C110.1203 (4)0.27147 (7)0.8258 (4)0.0154 (4)
C12−0.0360 (4)0.35000 (7)0.9780 (4)0.0168 (4)
H120.10850.36360.87390.020*
C13−0.2834 (4)0.38039 (8)0.9209 (4)0.0187 (4)
H13A−0.43020.36751.02080.022*
H13B−0.33400.37770.73660.022*
C14−0.2356 (5)0.43413 (8)0.9899 (4)0.0194 (5)
H14A−0.40000.45290.95870.023*
H14B−0.09950.44780.87930.023*
C15−0.1453 (4)0.43918 (8)1.2721 (4)0.0184 (4)
H15A−0.10480.47391.31060.022*
H15B−0.28880.42871.38320.022*
C160.0984 (4)0.40803 (8)1.3293 (4)0.0205 (5)
H16A0.14860.41061.51370.025*
H16B0.24660.42061.23010.025*
C170.0493 (4)0.35425 (8)1.2602 (4)0.0185 (5)
H17A0.21230.33511.29340.022*
H17B−0.08970.34081.36820.022*
H10.603 (6)0.2006 (11)0.090 (6)0.042 (8)*
H2−0.240 (5)0.2875 (10)0.891 (5)0.027 (7)*
U11U22U33U12U13U23
O10.0251 (8)0.0167 (8)0.0310 (9)−0.0030 (7)0.0032 (7)−0.0044 (7)
O20.0158 (7)0.0174 (8)0.0214 (8)−0.0014 (6)0.0052 (6)−0.0016 (6)
O30.0157 (7)0.0193 (8)0.0277 (9)−0.0012 (6)0.0022 (6)−0.0038 (6)
N10.0182 (9)0.0182 (9)0.0167 (9)0.0019 (7)0.0070 (7)−0.0002 (7)
N20.0132 (9)0.0159 (9)0.0211 (10)−0.0008 (7)0.0020 (7)−0.0023 (7)
C10.0225 (12)0.0194 (11)0.0303 (13)−0.0028 (10)0.0008 (10)0.0029 (9)
C20.0180 (11)0.0165 (11)0.0226 (11)0.0014 (8)−0.0016 (9)−0.0004 (8)
C30.0249 (12)0.0198 (11)0.0171 (11)0.0046 (9)−0.0033 (9)−0.0045 (9)
C40.0190 (10)0.0210 (12)0.0155 (10)0.0043 (9)0.0015 (8)−0.0021 (8)
C50.0169 (10)0.0169 (10)0.0137 (10)0.0016 (8)0.0016 (8)0.0023 (8)
C60.0183 (10)0.0175 (11)0.0189 (10)0.0013 (9)0.0011 (8)0.0005 (8)
C70.0133 (9)0.0139 (10)0.0168 (10)0.0014 (8)0.0012 (8)0.0007 (8)
C80.0128 (10)0.0176 (10)0.0155 (10)0.0027 (8)0.0008 (8)0.0006 (8)
C90.0160 (10)0.0179 (11)0.0171 (10)0.0005 (9)0.0017 (8)0.0031 (8)
C100.0144 (10)0.0138 (10)0.0169 (10)0.0016 (8)0.0003 (8)0.0007 (8)
C110.0163 (10)0.0159 (11)0.0141 (10)−0.0001 (8)0.0025 (8)0.0006 (8)
C120.0173 (10)0.0137 (10)0.0196 (11)0.0004 (8)0.0028 (9)−0.0011 (8)
C130.0197 (10)0.0164 (10)0.0200 (11)0.0005 (9)0.0019 (9)−0.0015 (8)
C140.0204 (11)0.0154 (10)0.0225 (11)0.0022 (8)0.0035 (9)0.0023 (8)
C150.0199 (11)0.0148 (10)0.0209 (11)0.0004 (8)0.0053 (9)−0.0024 (8)
C160.0227 (11)0.0195 (11)0.0194 (11)0.0010 (9)0.0011 (9)−0.0013 (8)
C170.0199 (11)0.0174 (11)0.0182 (11)0.0038 (9)0.0001 (9)−0.0015 (8)
O1—C21.379 (3)C7—C101.431 (3)
O1—C11.427 (3)C7—C81.448 (3)
O2—C101.238 (2)C8—C91.403 (3)
O3—C111.237 (2)C9—H90.9500
N1—C61.344 (3)C10—C111.534 (3)
N1—C51.389 (3)C12—C171.526 (3)
N1—H10.96 (3)C12—C131.528 (3)
N2—C111.331 (3)C12—H121.0000
N2—C121.465 (3)C13—C141.530 (3)
N2—H20.88 (3)C13—H13A0.9900
C1—H1A0.9800C13—H13B0.9900
C1—H1B0.9800C14—C151.534 (3)
C1—H1C0.9800C14—H14A0.9900
C2—C91.379 (3)C14—H14B0.9900
C2—C31.409 (3)C15—C161.524 (3)
C3—C41.375 (3)C15—H15A0.9900
C3—H30.9500C15—H15B0.9900
C4—C51.388 (3)C16—C171.532 (3)
C4—H40.9500C16—H16A0.9900
C5—C81.405 (3)C16—H16B0.9900
C6—C71.399 (3)C17—H17A0.9900
C6—H60.9500C17—H17B0.9900
C2—O1—C1116.63 (17)O3—C11—N2123.5 (2)
C6—N1—C5109.37 (18)O3—C11—C10121.94 (18)
C6—N1—H1122.6 (18)N2—C11—C10114.56 (18)
C5—N1—H1128.1 (18)N2—C12—C17112.11 (17)
C11—N2—C12120.74 (17)N2—C12—C13110.36 (18)
C11—N2—H2119.9 (18)C17—C12—C13110.58 (17)
C12—N2—H2119.2 (18)N2—C12—H12107.9
O1—C1—H1A109.5C17—C12—H12107.9
O1—C1—H1B109.5C13—C12—H12107.9
H1A—C1—H1B109.5C12—C13—C14110.68 (18)
O1—C1—H1C109.5C12—C13—H13A109.5
H1A—C1—H1C109.5C14—C13—H13A109.5
H1B—C1—H1C109.5C12—C13—H13B109.5
C9—C2—O1124.05 (18)C14—C13—H13B109.5
C9—C2—C3121.8 (2)H13A—C13—H13B108.1
O1—C2—C3114.11 (19)C13—C14—C15110.64 (18)
C4—C3—C2121.0 (2)C13—C14—H14A109.5
C4—C3—H3119.5C15—C14—H14A109.5
C2—C3—H3119.5C13—C14—H14B109.5
C3—C4—C5117.46 (19)C15—C14—H14B109.5
C3—C4—H4121.3H14A—C14—H14B108.1
C5—C4—H4121.3C16—C15—C14110.60 (18)
C4—C5—N1129.47 (18)C16—C15—H15A109.5
C4—C5—C8122.22 (19)C14—C15—H15A109.5
N1—C5—C8108.29 (18)C16—C15—H15B109.5
N1—C6—C7109.98 (19)C14—C15—H15B109.5
N1—C6—H6125.0H15A—C15—H15B108.1
C7—C6—H6125.0C15—C16—C17111.42 (19)
C6—C7—C10127.11 (19)C15—C16—H16A109.3
C6—C7—C8106.15 (17)C17—C16—H16A109.3
C10—C7—C8126.63 (17)C15—C16—H16B109.3
C9—C8—C5119.91 (19)C17—C16—H16B109.3
C9—C8—C7133.89 (18)H16A—C16—H16B108.0
C5—C8—C7106.20 (18)C12—C17—C16109.81 (17)
C2—C9—C8117.55 (18)C12—C17—H17A109.7
C2—C9—H9121.2C16—C17—H17A109.7
C8—C9—H9121.2C12—C17—H17B109.7
O2—C10—C7123.40 (19)C16—C17—H17B109.7
O2—C10—C11118.42 (18)H17A—C17—H17B108.2
C7—C10—C11118.15 (17)
C1—O1—C2—C9−1.3 (3)C5—C8—C9—C2−0.7 (3)
C1—O1—C2—C3177.67 (19)C7—C8—C9—C2179.7 (2)
C9—C2—C3—C40.6 (3)C6—C7—C10—O2174.9 (2)
O1—C2—C3—C4−178.4 (2)C8—C7—C10—O2−0.7 (3)
C2—C3—C4—C50.1 (3)C6—C7—C10—C11−2.9 (3)
C3—C4—C5—N1−179.4 (2)C8—C7—C10—C11−178.55 (19)
C3—C4—C5—C8−1.2 (3)C12—N2—C11—O34.1 (3)
C6—N1—C5—C4178.7 (2)C12—N2—C11—C10−175.09 (18)
C6—N1—C5—C80.3 (2)O2—C10—C11—O3148.5 (2)
C5—N1—C6—C7−0.2 (2)C7—C10—C11—O3−33.6 (3)
N1—C6—C7—C10−176.2 (2)O2—C10—C11—N2−32.4 (3)
N1—C6—C7—C80.1 (2)C7—C10—C11—N2145.54 (19)
C4—C5—C8—C91.5 (3)C11—N2—C12—C17−85.5 (2)
N1—C5—C8—C9−179.95 (19)C11—N2—C12—C13150.80 (19)
C4—C5—C8—C7−178.77 (19)N2—C12—C13—C14−177.23 (17)
N1—C5—C8—C7−0.2 (2)C17—C12—C13—C1458.2 (2)
C6—C7—C8—C9179.8 (2)C12—C13—C14—C15−56.8 (2)
C10—C7—C8—C9−3.9 (4)C13—C14—C15—C1655.7 (2)
C6—C7—C8—C50.1 (2)C14—C15—C16—C17−56.4 (2)
C10—C7—C8—C5176.4 (2)N2—C12—C17—C16178.52 (17)
O1—C2—C9—C8178.57 (19)C13—C12—C17—C16−57.9 (2)
C3—C2—C9—C8−0.4 (3)C15—C16—C17—C1257.4 (2)
D—H···AD—HH···AD···AD—H···A
N1—H1···O2i0.96 (3)1.90 (3)2.840 (2)164 (3)
N2—H2···O3ii0.88 (3)2.09 (3)2.926 (3)160 (3)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1⋯O2i0.96 (3)1.90 (3)2.840 (2)164 (3)
N2—H2⋯O3ii0.88 (3)2.09 (3)2.926 (3)160 (3)

Symmetry codes: (i) ; (ii) .

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Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Synthesis and in vitro anti-hepatitis B virus activities of some ethyl 6-bromo-5-hydroxy-1H-indole-3-carboxylates.

Authors:  Huifang Chai; Yanfang Zhao; Chunshen Zhao; Ping Gong
Journal:  Bioorg Med Chem       Date:  2005-09-23       Impact factor: 3.641

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4.  A microwave-assisted facile regioselective Fischer indole synthesis and antitubercular evaluation of novel 2-aryl-3,4-dihydro-2H-thieno[3,2-b]indoles.

Authors:  Subramanian Vedhanarayanan Karthikeyan; Subbu Perumal; Krithika Arun Shetty; Perumal Yogeeswari; Dharmarajan Sriram
Journal:  Bioorg Med Chem Lett       Date:  2009-04-14       Impact factor: 2.823

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Authors:  Einat Souli; Marcelle Machluf; Abigail Morgenstern; Edmond Sabo; Shmuel Yannai
Journal:  Food Chem Toxicol       Date:  2007-10-30       Impact factor: 6.023

6.  Synthesis and biological evaluation of new 3-substituted indole derivatives as potential anti-inflammatory and analgesic agents.

Authors:  Mohamed A A Radwan; Eman A Ragab; Nermien M Sabry; Siham M El-Shenawy
Journal:  Bioorg Med Chem       Date:  2007-03-13       Impact factor: 3.641

7.  4-Des-oxy-4β-[(5-meth-oxy-1H-indol-3-yl)oxalylamino]podophyllotoxin methanol solvate.

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Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-11-13
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1.  N-Cyclo-hexyl-2-(5-fluoro-1H-indol-3-yl)-2-oxoacetamide.

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Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-06-30
  1 in total

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