Literature DB >> 21522953

4-{2-[(3,4-Dichloro-phen-yl)(meth-yl)amino]-4-methyl-1,3-thia-zol-5-yl}-N-(3-methyl-phen-yl)pyrimidin-2-amine.

Hai-Bo Li, Hai-Bo Shi, Wei-Xiao Hu.   

Abstract

In the title compound, C(22)H(19)Cl(2)N(5)S, the thia-zole and pyrimidine rings are almost co-planar, making a dihedral angle of 6.48 (7)°. In the crystal, intermolecular N-H⋯N hydrogen bonds link pairs of molecules into centrosymmetric dimers..

Entities:  

Year:  2011        PMID: 21522953      PMCID: PMC3051541          DOI: 10.1107/S1600536810053547

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background to the biological activity of thia­zole derivatives, see: Narayana et al. (2004 ▶). For the synthesis of the title compound, see: Bredereck et al. (1964 ▶).

Experimental

Crystal data

C22H19Cl2N5S M = 456.38 Triclinic, a = 7.9679 (15) Å b = 9.4042 (19) Å c = 14.166 (3) Å α = 85.421 (6)° β = 76.727 (5)° γ = 86.002 (6)° V = 1028.4 (3) Å3 Z = 2 Mo Kα radiation μ = 0.44 mm−1 T = 103 K 0.53 × 0.50 × 0.40 mm

Data collection

Rigaku AFC10/Saturn724+ diffractometer Absorption correction: multi-scan (CrystalClear; Rigaku/MSC, 2008) ▶ T min = 0.801, T max = 0.844 9828 measured reflections 4626 independent reflections 3906 reflections with I > 2σ(I) R int = 0.021

Refinement

R[F 2 > 2σ(F 2)] = 0.033 wR(F 2) = 0.091 S = 1.05 4626 reflections 275 parameters H-atom parameters constrained Δρmax = 0.37 e Å−3 Δρmin = −0.25 e Å−3 Data collection: CrystalClear (Rigaku/MSC, 2008 ▶); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810053547/ng5079sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810053547/ng5079Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C22H19Cl2N5SZ = 2
Mr = 456.38F(000) = 472
Triclinic, P1Dx = 1.474 Mg m3
Hall symbol: -P 1Melting point = 473–472 K
a = 7.9679 (15) ÅMo Kα radiation, λ = 0.71073 Å
b = 9.4042 (19) ÅCell parameters from 3163 reflections
c = 14.166 (3) Åθ = 3.3–27.5°
α = 85.421 (6)°µ = 0.44 mm1
β = 76.727 (5)°T = 103 K
γ = 86.002 (6)°Block, yellow
V = 1028.4 (3) Å30.53 × 0.50 × 0.40 mm
Rigaku AFC10/Saturn724+ diffractometer4626 independent reflections
Radiation source: fine-focus sealed tube3906 reflections with I > 2σ(I)
graphiteRint = 0.021
Detector resolution: 28.5714 pixels mm-1θmax = 27.5°, θmin = 3.3°
phi and ω scansh = −10→10
Absorption correction: multi-scan (CrystalClear; Rigaku/MSC, 2008)k = −12→12
Tmin = 0.801, Tmax = 0.844l = −16→18
9828 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.033Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.091H-atom parameters constrained
S = 1.05w = 1/[σ2(Fo2) + (0.0486P)2 + 0.1912P] where P = (Fo2 + 2Fc2)/3
4626 reflections(Δ/σ)max = 0.002
275 parametersΔρmax = 0.37 e Å3
0 restraintsΔρmin = −0.25 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl10.65348 (6)0.39036 (4)1.06940 (3)0.02494 (11)
Cl21.02033 (6)0.23777 (5)0.99130 (3)0.03270 (13)
S10.46927 (5)0.38651 (4)0.73411 (3)0.01502 (10)
N10.42851 (17)0.12266 (14)0.82588 (10)0.0177 (3)
N20.24614 (17)0.20416 (14)0.72255 (10)0.0174 (3)
N30.40431 (17)0.83042 (14)0.50231 (10)0.0166 (3)
N40.46548 (16)0.64873 (13)0.62050 (9)0.0152 (3)
C10.5466 (2)0.24613 (16)0.93887 (11)0.0167 (3)
H10.43700.29360.96100.020*
C20.6847 (2)0.27394 (16)0.97755 (11)0.0172 (3)
C30.8457 (2)0.20465 (18)0.94480 (12)0.0199 (3)
C40.8656 (2)0.1063 (2)0.87532 (13)0.0260 (4)
H40.97490.05810.85350.031*
C50.7274 (2)0.07723 (19)0.83720 (12)0.0227 (4)
H50.74150.00830.79010.027*
C60.5687 (2)0.14890 (16)0.86789 (11)0.0158 (3)
C70.37223 (19)0.22404 (16)0.76455 (11)0.0150 (3)
C80.2218 (2)0.32085 (16)0.66094 (11)0.0161 (3)
C90.3305 (2)0.42957 (16)0.65541 (11)0.0153 (3)
C100.3515 (2)0.56427 (16)0.59808 (11)0.0144 (3)
C110.2660 (2)0.60746 (16)0.52437 (11)0.0173 (3)
H110.19060.54730.50520.021*
C120.2970 (2)0.74247 (17)0.48071 (12)0.0180 (3)
H120.23720.77500.43160.022*
C130.4895 (2)0.77493 (16)0.57055 (11)0.0150 (3)
C140.7437 (2)0.82794 (16)0.63641 (11)0.0155 (3)
C150.8818 (2)0.91812 (16)0.61470 (11)0.0162 (3)
H150.88250.99580.56750.019*
C161.0172 (2)0.89571 (16)0.66104 (12)0.0180 (3)
H161.10840.95950.64680.022*
C171.0204 (2)0.78011 (17)0.72849 (12)0.0176 (3)
H171.11440.76420.75950.021*
C180.8856 (2)0.68802 (17)0.75029 (11)0.0173 (3)
C190.7475 (2)0.71314 (16)0.70470 (11)0.0179 (3)
H190.65460.65100.72050.021*
C200.3733 (2)−0.02305 (17)0.82886 (13)0.0224 (4)
H20A0.2555−0.02910.86860.027*
H20B0.4515−0.08950.85730.027*
H20C0.3759−0.04820.76270.027*
C210.0762 (2)0.31764 (18)0.61070 (13)0.0248 (4)
H21A0.00860.40890.61660.030*
H21B0.00200.23990.64080.030*
H21C0.12290.30200.54180.030*
C220.8862 (2)0.56045 (18)0.82177 (13)0.0243 (4)
H22A0.80180.57870.88230.029*
H22B1.00150.54370.83520.029*
H22C0.85580.47610.79420.029*
N50.61031 (17)0.86089 (14)0.58696 (10)0.0185 (3)
H5N0.60340.94980.56300.032 (6)*
U11U22U33U12U13U23
Cl10.0352 (2)0.0191 (2)0.0227 (2)0.00067 (16)−0.00980 (17)−0.00635 (15)
Cl20.0238 (2)0.0468 (3)0.0331 (3)−0.00328 (19)−0.01516 (19)−0.0099 (2)
S10.01644 (19)0.01321 (18)0.0177 (2)−0.00395 (13)−0.00857 (15)0.00174 (14)
N10.0186 (7)0.0134 (6)0.0232 (7)−0.0041 (5)−0.0095 (6)0.0033 (5)
N20.0165 (7)0.0164 (7)0.0209 (7)−0.0034 (5)−0.0075 (5)0.0005 (5)
N30.0178 (7)0.0153 (6)0.0177 (7)−0.0006 (5)−0.0067 (5)0.0004 (5)
N40.0166 (6)0.0143 (6)0.0163 (7)−0.0020 (5)−0.0068 (5)−0.0005 (5)
C10.0175 (8)0.0151 (7)0.0167 (8)0.0007 (6)−0.0040 (6)0.0021 (6)
C20.0249 (8)0.0130 (7)0.0140 (8)−0.0015 (6)−0.0057 (6)0.0016 (6)
C30.0174 (8)0.0255 (8)0.0182 (8)−0.0026 (6)−0.0070 (6)−0.0004 (6)
C40.0165 (8)0.0362 (10)0.0261 (10)0.0036 (7)−0.0055 (7)−0.0100 (7)
C50.0197 (8)0.0295 (9)0.0201 (9)0.0011 (7)−0.0048 (7)−0.0095 (7)
C60.0166 (7)0.0159 (7)0.0148 (8)−0.0027 (6)−0.0048 (6)0.0043 (6)
C70.0149 (7)0.0138 (7)0.0161 (8)−0.0026 (6)−0.0028 (6)−0.0007 (6)
C80.0158 (7)0.0153 (7)0.0186 (8)−0.0011 (6)−0.0066 (6)−0.0016 (6)
C90.0155 (7)0.0155 (7)0.0167 (8)−0.0001 (6)−0.0073 (6)−0.0018 (6)
C100.0160 (7)0.0128 (7)0.0156 (8)0.0001 (5)−0.0056 (6)−0.0025 (6)
C110.0184 (8)0.0172 (8)0.0187 (8)−0.0016 (6)−0.0090 (6)−0.0019 (6)
C120.0199 (8)0.0181 (8)0.0172 (8)0.0020 (6)−0.0078 (6)−0.0004 (6)
C130.0169 (7)0.0152 (7)0.0129 (7)−0.0004 (6)−0.0034 (6)−0.0011 (6)
C140.0164 (7)0.0161 (7)0.0145 (8)−0.0023 (6)−0.0042 (6)−0.0019 (6)
C150.0184 (8)0.0136 (7)0.0151 (8)−0.0020 (6)−0.0008 (6)−0.0001 (6)
C160.0145 (7)0.0177 (8)0.0210 (8)−0.0034 (6)−0.0005 (6)−0.0042 (6)
C170.0156 (8)0.0205 (8)0.0180 (8)−0.0001 (6)−0.0056 (6)−0.0050 (6)
C180.0210 (8)0.0169 (7)0.0152 (8)−0.0014 (6)−0.0062 (6)−0.0014 (6)
C190.0208 (8)0.0168 (8)0.0179 (8)−0.0068 (6)−0.0072 (6)0.0007 (6)
C200.0230 (9)0.0149 (8)0.0304 (10)−0.0057 (6)−0.0090 (7)0.0055 (7)
C210.0248 (9)0.0227 (9)0.0321 (10)−0.0076 (7)−0.0168 (7)0.0028 (7)
C220.0303 (9)0.0217 (9)0.0249 (9)−0.0067 (7)−0.0149 (7)0.0051 (7)
N50.0228 (7)0.0146 (7)0.0203 (7)−0.0053 (5)−0.0101 (6)0.0051 (5)
Cl1—C21.7304 (17)C11—C121.380 (2)
Cl2—C31.7266 (17)C11—H110.9500
S1—C71.7392 (15)C12—H120.9500
S1—C91.7492 (15)C13—N51.3694 (19)
N1—C71.361 (2)C14—C191.394 (2)
N1—C61.424 (2)C14—C151.399 (2)
N1—C201.4626 (19)C14—N51.407 (2)
N2—C71.310 (2)C15—C161.382 (2)
N2—C81.3778 (19)C15—H150.9500
N3—C121.330 (2)C16—C171.392 (2)
N3—C131.3561 (19)C16—H160.9500
N4—C131.3346 (19)C17—C181.391 (2)
N4—C101.3530 (19)C17—H170.9500
C1—C21.386 (2)C18—C191.396 (2)
C1—C61.386 (2)C18—C221.507 (2)
C1—H10.9500C19—H190.9500
C2—C31.394 (2)C20—H20A0.9800
C3—C41.380 (2)C20—H20B0.9800
C4—C51.384 (2)C20—H20C0.9800
C4—H40.9500C21—H21A0.9800
C5—C61.385 (2)C21—H21B0.9800
C5—H50.9500C21—H21C0.9800
C8—C91.372 (2)C22—H22A0.9800
C8—C211.497 (2)C22—H22B0.9800
C9—C101.447 (2)C22—H22C0.9800
C10—C111.392 (2)N5—H5N0.8800
C7—S1—C988.31 (7)N4—C13—N3126.28 (14)
C7—N1—C6120.09 (13)N4—C13—N5119.49 (14)
C7—N1—C20118.53 (13)N3—C13—N5114.23 (13)
C6—N1—C20119.69 (12)C19—C14—C15118.38 (14)
C7—N2—C8110.18 (13)C19—C14—N5124.83 (14)
C12—N3—C13114.27 (13)C15—C14—N5116.80 (13)
C13—N4—C10117.34 (13)C16—C15—C14120.89 (14)
C2—C1—C6119.86 (15)C16—C15—H15119.6
C2—C1—H1120.1C14—C15—H15119.6
C6—C1—H1120.1C15—C16—C17120.25 (14)
C1—C2—C3120.02 (15)C15—C16—H16119.9
C1—C2—Cl1119.41 (12)C17—C16—H16119.9
C3—C2—Cl1120.53 (13)C18—C17—C16119.82 (15)
C4—C3—C2119.66 (15)C18—C17—H17120.1
C4—C3—Cl2119.29 (13)C16—C17—H17120.1
C2—C3—Cl2121.04 (13)C17—C18—C19119.58 (14)
C3—C4—C5120.44 (16)C17—C18—C22121.23 (15)
C3—C4—H4119.8C19—C18—C22119.20 (14)
C5—C4—H4119.8C14—C19—C18121.06 (14)
C4—C5—C6119.86 (16)C14—C19—H19119.5
C4—C5—H5120.1C18—C19—H19119.5
C6—C5—H5120.1N1—C20—H20A109.5
C5—C6—C1120.11 (15)N1—C20—H20B109.5
C5—C6—N1119.71 (15)H20A—C20—H20B109.5
C1—C6—N1120.18 (14)N1—C20—H20C109.5
N2—C7—N1122.48 (14)H20A—C20—H20C109.5
N2—C7—S1115.90 (11)H20B—C20—H20C109.5
N1—C7—S1121.59 (12)C8—C21—H21A109.5
C9—C8—N2115.95 (14)C8—C21—H21B109.5
C9—C8—C21127.26 (14)H21A—C21—H21B109.5
N2—C8—C21116.74 (13)C8—C21—H21C109.5
C8—C9—C10132.96 (14)H21A—C21—H21C109.5
C8—C9—S1109.62 (11)H21B—C21—H21C109.5
C10—C9—S1117.41 (11)C18—C22—H22A109.5
N4—C10—C11120.73 (14)C18—C22—H22B109.5
N4—C10—C9114.52 (13)H22A—C22—H22B109.5
C11—C10—C9124.75 (14)C18—C22—H22C109.5
C12—C11—C10116.32 (14)H22A—C22—H22C109.5
C12—C11—H11121.8H22B—C22—H22C109.5
C10—C11—H11121.8C13—N5—C14129.52 (13)
N3—C12—C11124.83 (14)C13—N5—H5N115.2
N3—C12—H12117.6C14—N5—H5N115.2
C11—C12—H12117.6
C6—C1—C2—C30.3 (2)C7—S1—C9—C81.59 (12)
C6—C1—C2—Cl1−177.54 (11)C7—S1—C9—C10−177.37 (13)
C1—C2—C3—C4−1.4 (2)C13—N4—C10—C111.2 (2)
Cl1—C2—C3—C4176.42 (13)C13—N4—C10—C9−179.55 (13)
C1—C2—C3—Cl2179.72 (12)C8—C9—C10—N4174.45 (17)
Cl1—C2—C3—Cl2−2.50 (19)S1—C9—C10—N4−6.89 (19)
C2—C3—C4—C50.8 (3)C8—C9—C10—C11−6.3 (3)
Cl2—C3—C4—C5179.69 (14)S1—C9—C10—C11172.32 (13)
C3—C4—C5—C61.0 (3)N4—C10—C11—C12−3.6 (2)
C4—C5—C6—C1−2.1 (2)C9—C10—C11—C12177.22 (15)
C4—C5—C6—N1177.66 (15)C13—N3—C12—C112.2 (2)
C2—C1—C6—C51.5 (2)C10—C11—C12—N31.8 (2)
C2—C1—C6—N1−178.28 (13)C10—N4—C13—N33.5 (2)
C7—N1—C6—C5−108.63 (18)C10—N4—C13—N5−176.52 (14)
C20—N1—C6—C556.3 (2)C12—N3—C13—N4−5.1 (2)
C7—N1—C6—C171.1 (2)C12—N3—C13—N5174.89 (14)
C20—N1—C6—C1−123.93 (16)C19—C14—C15—C16−1.2 (2)
C8—N2—C7—N1−177.07 (14)N5—C14—C15—C16178.77 (14)
C8—N2—C7—S10.87 (18)C14—C15—C16—C171.7 (2)
C6—N1—C7—N2178.64 (14)C15—C16—C17—C18−0.9 (2)
C20—N1—C7—N213.5 (2)C16—C17—C18—C19−0.5 (2)
C6—N1—C7—S10.8 (2)C16—C17—C18—C22179.02 (15)
C20—N1—C7—S1−164.32 (12)C15—C14—C19—C18−0.2 (2)
C9—S1—C7—N2−1.46 (13)N5—C14—C19—C18179.85 (15)
C9—S1—C7—N1176.49 (14)C17—C18—C19—C141.0 (2)
C7—N2—C8—C90.5 (2)C22—C18—C19—C14−178.47 (16)
C7—N2—C8—C21−177.22 (14)N4—C13—N5—C1414.1 (2)
N2—C8—C9—C10177.21 (16)N3—C13—N5—C14−165.88 (15)
C21—C8—C9—C10−5.4 (3)C19—C14—N5—C13−21.4 (3)
N2—C8—C9—S1−1.52 (18)C15—C14—N5—C13158.68 (16)
C21—C8—C9—S1175.88 (14)
D—H···AD—HH···AD···AD—H···A
N5—H5N···N3i0.882.203.078 (2)177
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N5—H5N⋯N3i0.882.203.078 (2)177

Symmetry code: (i) .

  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Synthesis of some new 5-(2-substituted-1,3-thiazol-5-yl)-2-hydroxy benzamides and their 2-alkoxy derivatives as possible antifungal agents.

Authors:  B Narayana; K K Vijaya Raj; B V Ashalatha; N Suchetha Kumari; B K Sarojini
Journal:  Eur J Med Chem       Date:  2004-10       Impact factor: 6.514

  2 in total

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