Literature DB >> 21522952

4-{4-Methyl-2-[(meth-yl)(2-methyl-phen-yl)amino]-1,3-thia-zol-5-yl}-N-(3-methyl-phen-yl)pyrimidin-2-amine.

Hai-Bo Shi, Feng Xu, Hai-Bo Li, Wei-Xiao Hu.   

Abstract

In the title compound, C(23)H(23)N(5)S, the thia-zole ring and n class="Chemical">pyrimidine ring are almost coplanar, making a dihedral angle of 4.02 (9)°. in the crystal, weak inter-molecular N-H⋯N inter-actions link pairs of molecules into centrosymmetric dimers.

Entities:  

Year:  2011        PMID: 21522952      PMCID: PMC3051713          DOI: 10.1107/S1600536810053560

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background to the biological activity of thia­zole derivatives, see: Narayana et al. (2004 ▶). For the synthesis of the title compound, see: Bredereck et al. (1964 ▶).

Experimental

Crystal data

C23H23N5S M = 401.52 Triclinic, a = 7.886 (2) Å b = 9.576 (3) Å c = 13.531 (4) Å α = 86.590 (9)° β = 81.657 (7)° γ = 85.926 (8)° V = 1007.2 (5) Å3 Z = 2 Mo Kα radiation μ = 0.18 mm−1 T = 103 K 0.53 × 0.37 × 0.15 mm

Data collection

Rigaku FC10/Saturn724+ diffractometer Absorption correction: multi-scan (CrystalClear; Rigaku/MSC, 2008 ▶) T min = 0.910, T max = 0.973 9716 measured reflections 4535 independent reflections 3652 reflections with I > 2σ(I) R int = 0.025

Refinement

R[F 2 > 2σ(F 2)] = 0.053 wR(F 2) = 0.145 S = 1.04 4535 reflections 267 parameters H-atom parameters constrained Δρmax = 0.88 e Å−3 Δρmin = −0.29 e Å−3 Data collection: CrystalClear (Rigaku/MSC, 2008 ▶); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810053560/ng5078sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810053560/ng5078Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C23H23N5SZ = 2
Mr = 401.52F(000) = 424
Triclinic, P1Dx = 1.324 Mg m3
Hall symbol: -P 1Melting point = 455–458 K
a = 7.886 (2) ÅMo Kα radiation, λ = 0.71073 Å
b = 9.576 (3) ÅCell parameters from 2962 reflections
c = 13.531 (4) Åθ = 3.1–27.5°
α = 86.590 (9)°µ = 0.18 mm1
β = 81.657 (7)°T = 103 K
γ = 85.926 (8)°Chunk, yellow
V = 1007.2 (5) Å30.53 × 0.37 × 0.15 mm
Rigaku FC10/Saturn724+ diffractometer4535 independent reflections
Radiation source: fine-focus sealed tube3652 reflections with I > 2σ(I)
graphiteRint = 0.025
Detector resolution: 28.5714 pixels mm-1θmax = 27.5°, θmin = 3.2°
phi and ω scansh = −9→10
Absorption correction: multi-scan (CrystalClear; Rigaku/MSC, 2008)k = −12→12
Tmin = 0.910, Tmax = 0.973l = −17→17
9716 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.053Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.145H-atom parameters constrained
S = 1.04w = 1/[σ2(Fo2) + (0.0846P)2 + 0.3916P] where P = (Fo2 + 2Fc2)/3
4535 reflections(Δ/σ)max = 0.028
267 parametersΔρmax = 0.88 e Å3
0 restraintsΔρmin = −0.29 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.49286 (6)0.59975 (5)0.26125 (4)0.02216 (15)
N10.5218 (2)0.85391 (18)0.16596 (14)0.0291 (4)
N20.7115 (2)0.78346 (17)0.28067 (13)0.0240 (4)
N30.5942 (2)0.16585 (16)0.49627 (12)0.0200 (3)
N40.5120 (2)0.34459 (16)0.37770 (12)0.0187 (3)
C10.4171 (3)0.7392 (2)0.03246 (17)0.0313 (5)
C20.2762 (3)0.7123 (2)−0.01462 (18)0.0389 (6)
H20.29430.6545−0.07040.047*
C30.1159 (4)0.7658 (3)0.0169 (2)0.0467 (7)
H30.02370.7459−0.01710.056*
C40.0846 (4)0.8502 (4)0.0990 (2)0.0548 (8)
H4−0.02850.88770.12090.066*
C50.2161 (4)0.8783 (3)0.14753 (19)0.0430 (6)
H50.19600.93580.20340.052*
C60.3856 (3)0.8205 (2)0.11364 (17)0.0313 (5)
C70.5837 (3)0.7599 (2)0.23286 (15)0.0224 (4)
C80.7434 (3)0.6704 (2)0.34395 (15)0.0214 (4)
C90.6390 (2)0.56111 (19)0.34608 (14)0.0189 (4)
C100.6291 (2)0.42802 (19)0.40239 (14)0.0179 (4)
C110.7270 (3)0.3854 (2)0.47785 (14)0.0217 (4)
H110.80530.44480.49870.026*
C120.7046 (3)0.2525 (2)0.52081 (15)0.0225 (4)
H120.77230.22060.57130.027*
C130.4981 (2)0.22012 (19)0.42660 (14)0.0187 (4)
C140.2321 (2)0.16692 (19)0.35740 (14)0.0189 (4)
C150.1008 (2)0.0738 (2)0.37477 (14)0.0206 (4)
H150.1113−0.00600.41920.025*
C16−0.0438 (3)0.0964 (2)0.32809 (15)0.0232 (4)
H16−0.13040.03100.33940.028*
C17−0.0636 (3)0.2142 (2)0.26472 (15)0.0224 (4)
H17−0.16360.22930.23300.027*
C180.0630 (3)0.3100 (2)0.24782 (14)0.0208 (4)
C190.2116 (3)0.2851 (2)0.29292 (14)0.0212 (4)
H190.29970.34910.27970.025*
C200.5933 (3)0.6860 (3)−0.0052 (2)0.0422 (6)
H20A0.66560.7651−0.02420.063*
H20B0.59140.6309−0.06370.063*
H20C0.64000.62670.04730.063*
C210.5830 (3)0.9947 (2)0.15159 (19)0.0368 (6)
H21A0.64401.01330.20710.044*
H21B0.48511.06330.14950.044*
H21C0.66121.00230.08850.044*
C220.8931 (3)0.6763 (2)0.40003 (19)0.0328 (5)
H22A0.95590.75940.37630.039*
H22B0.96970.59190.38880.039*
H22C0.85160.68160.47170.039*
C230.0426 (3)0.4413 (2)0.18208 (16)0.0257 (4)
H23A0.11440.51240.20030.031*
H23B−0.07800.47700.19130.031*
H23C0.07810.41970.11190.031*
N50.3751 (2)0.13476 (17)0.40750 (13)0.0220 (4)
H5N0.38770.04700.43000.054 (9)*
U11U22U33U12U13U23
S10.0269 (3)0.0208 (3)0.0217 (3)−0.00942 (19)−0.01263 (19)0.00710 (18)
N10.0400 (11)0.0213 (8)0.0299 (10)−0.0104 (8)−0.0187 (8)0.0105 (7)
N20.0274 (9)0.0211 (8)0.0258 (9)−0.0085 (7)−0.0101 (7)0.0045 (7)
N30.0207 (8)0.0191 (8)0.0211 (8)−0.0012 (6)−0.0070 (6)0.0029 (6)
N40.0191 (8)0.0181 (8)0.0196 (8)−0.0038 (6)−0.0052 (6)0.0015 (6)
C10.0364 (12)0.0273 (11)0.0297 (11)−0.0028 (10)−0.0069 (9)0.0078 (9)
C20.0550 (16)0.0320 (12)0.0347 (13)−0.0160 (11)−0.0228 (11)0.0133 (10)
C30.0469 (16)0.0523 (16)0.0453 (15)−0.0117 (13)−0.0219 (12)0.0092 (12)
C40.0339 (14)0.077 (2)0.0510 (17)0.0081 (14)−0.0049 (12)0.0043 (15)
C50.0512 (16)0.0468 (15)0.0304 (12)0.0032 (12)−0.0068 (11)−0.0027 (11)
C60.0407 (13)0.0279 (11)0.0280 (11)−0.0113 (10)−0.0151 (9)0.0115 (9)
C70.0269 (10)0.0197 (9)0.0218 (10)−0.0073 (8)−0.0070 (8)0.0047 (7)
C80.0203 (9)0.0218 (9)0.0235 (10)−0.0040 (8)−0.0071 (7)0.0000 (8)
C90.0202 (9)0.0191 (9)0.0186 (9)−0.0026 (7)−0.0076 (7)0.0024 (7)
C100.0171 (9)0.0173 (9)0.0198 (9)−0.0013 (7)−0.0041 (7)−0.0005 (7)
C110.0221 (10)0.0215 (9)0.0237 (10)−0.0047 (8)−0.0097 (8)0.0017 (8)
C120.0240 (10)0.0217 (9)0.0235 (10)−0.0004 (8)−0.0104 (8)0.0000 (8)
C130.0184 (9)0.0191 (9)0.0189 (9)−0.0018 (7)−0.0040 (7)0.0001 (7)
C140.0200 (9)0.0190 (9)0.0182 (9)−0.0017 (7)−0.0048 (7)0.0001 (7)
C150.0228 (10)0.0177 (9)0.0214 (9)−0.0035 (8)−0.0027 (7)0.0006 (7)
C160.0187 (9)0.0244 (10)0.0264 (10)−0.0046 (8)−0.0013 (8)−0.0028 (8)
C170.0184 (9)0.0271 (10)0.0224 (10)−0.0019 (8)−0.0048 (7)−0.0027 (8)
C180.0229 (10)0.0231 (9)0.0167 (9)−0.0008 (8)−0.0043 (7)−0.0015 (7)
C190.0223 (10)0.0218 (9)0.0208 (9)−0.0066 (8)−0.0065 (7)0.0023 (7)
C200.0405 (14)0.0417 (14)0.0422 (14)0.0058 (11)−0.0077 (11)0.0114 (11)
C210.0498 (15)0.0227 (11)0.0422 (14)−0.0134 (10)−0.0211 (11)0.0123 (9)
C220.0306 (12)0.0280 (11)0.0449 (13)−0.0136 (9)−0.0218 (10)0.0096 (10)
C230.0269 (10)0.0263 (10)0.0252 (10)−0.0027 (8)−0.0098 (8)0.0038 (8)
N50.0235 (9)0.0177 (8)0.0270 (9)−0.0053 (7)−0.0116 (7)0.0064 (6)
S1—C71.738 (2)C12—H120.9500
S1—C91.7478 (18)C13—N51.373 (2)
N1—C71.356 (2)C14—C151.400 (3)
N1—C61.433 (3)C14—C191.402 (3)
N1—C211.457 (3)C14—N51.405 (2)
N2—C71.313 (2)C15—C161.380 (3)
N2—C81.372 (2)C15—H150.9500
N3—C121.332 (2)C16—C171.390 (3)
N3—C131.351 (2)C16—H160.9500
N4—C131.332 (2)C17—C181.388 (3)
N4—C101.352 (2)C17—H170.9500
C1—C61.367 (3)C18—C191.397 (3)
C1—C21.405 (3)C18—C231.509 (3)
C1—C201.475 (3)C19—H190.9500
C2—C31.349 (4)C20—H20A0.9800
C2—H20.9500C20—H20B0.9800
C3—C41.396 (4)C20—H20C0.9800
C3—H30.9500C21—H21A0.9800
C4—C51.355 (4)C21—H21B0.9800
C4—H40.9500C21—H21C0.9800
C5—C61.432 (4)C22—H22A0.9800
C5—H50.9500C22—H22B0.9800
C8—C91.374 (3)C22—H22C0.9800
C8—C221.499 (3)C23—H23A0.9800
C9—C101.447 (3)C23—H23B0.9800
C10—C111.393 (2)C23—H23C0.9800
C11—C121.380 (3)N5—H5N0.8800
C11—H110.9500
C7—S1—C988.26 (9)C15—C14—C19118.35 (17)
C7—N1—C6120.68 (17)C15—C14—N5116.79 (17)
C7—N1—C21120.59 (17)C19—C14—N5124.86 (17)
C6—N1—C21118.57 (16)C16—C15—C14120.77 (18)
C7—N2—C8109.74 (16)C16—C15—H15119.6
C12—N3—C13114.47 (16)C14—C15—H15119.6
C13—N4—C10117.30 (16)C15—C16—C17120.50 (18)
C6—C1—C2117.4 (2)C15—C16—H16119.8
C6—C1—C20120.8 (2)C17—C16—H16119.8
C2—C1—C20121.8 (2)C18—C17—C16119.96 (18)
C3—C2—C1122.0 (3)C18—C17—H17120.0
C3—C2—H2119.0C16—C17—H17120.0
C1—C2—H2119.0C17—C18—C19119.56 (18)
C2—C3—C4120.4 (2)C17—C18—C23121.20 (17)
C2—C3—H3119.8C19—C18—C23119.23 (18)
C4—C3—H3119.8C18—C19—C14120.82 (18)
C5—C4—C3119.8 (3)C18—C19—H19119.6
C5—C4—H4120.1C14—C19—H19119.6
C3—C4—H4120.1C1—C20—H20A109.5
C4—C5—C6119.3 (2)C1—C20—H20B109.5
C4—C5—H5120.3H20A—C20—H20B109.5
C6—C5—H5120.3C1—C20—H20C109.5
C1—C6—C5121.1 (2)H20A—C20—H20C109.5
C1—C6—N1121.1 (2)H20B—C20—H20C109.5
C5—C6—N1117.8 (2)N1—C21—H21A109.5
N2—C7—N1123.19 (18)N1—C21—H21B109.5
N2—C7—S1116.16 (14)H21A—C21—H21B109.5
N1—C7—S1120.64 (15)N1—C21—H21C109.5
N2—C8—C9116.43 (17)H21A—C21—H21C109.5
N2—C8—C22116.68 (17)H21B—C21—H21C109.5
C9—C8—C22126.83 (18)C8—C22—H22A109.5
C8—C9—C10133.18 (17)C8—C22—H22B109.5
C8—C9—S1109.40 (14)H22A—C22—H22B109.5
C10—C9—S1117.43 (14)C8—C22—H22C109.5
N4—C10—C11120.64 (17)H22A—C22—H22C109.5
N4—C10—C9114.62 (16)H22B—C22—H22C109.5
C11—C10—C9124.73 (17)C18—C23—H23A109.5
C12—C11—C10116.55 (18)C18—C23—H23B109.5
C12—C11—H11121.7H23A—C23—H23B109.5
C10—C11—H11121.7C18—C23—H23C109.5
N3—C12—C11124.37 (17)H23A—C23—H23C109.5
N3—C12—H12117.8H23B—C23—H23C109.5
C11—C12—H12117.8C13—N5—C14129.50 (16)
N4—C13—N3126.49 (17)C13—N5—H5N115.3
N4—C13—N5119.31 (16)C14—N5—H5N115.3
N3—C13—N5114.20 (16)
C6—C1—C2—C31.2 (3)C7—S1—C9—C10179.10 (16)
C20—C1—C2—C3−177.0 (2)C13—N4—C10—C11−1.6 (3)
C1—C2—C3—C4−0.5 (4)C13—N4—C10—C9179.50 (16)
C2—C3—C4—C5−0.1 (4)C8—C9—C10—N4−176.2 (2)
C3—C4—C5—C6−0.1 (4)S1—C9—C10—N43.7 (2)
C2—C1—C6—C5−1.4 (3)C8—C9—C10—C115.0 (4)
C20—C1—C6—C5176.9 (2)S1—C9—C10—C11−175.12 (16)
C2—C1—C6—N1−179.71 (18)N4—C10—C11—C123.5 (3)
C20—C1—C6—N1−1.4 (3)C9—C10—C11—C12−177.68 (18)
C4—C5—C6—C10.9 (4)C13—N3—C12—C11−2.2 (3)
C4—C5—C6—N1179.3 (2)C10—C11—C12—N3−1.5 (3)
C7—N1—C6—C1−79.6 (3)C10—N4—C13—N3−2.7 (3)
C21—N1—C6—C1105.1 (3)C10—N4—C13—N5176.82 (18)
C7—N1—C6—C5102.0 (3)C12—N3—C13—N44.6 (3)
C21—N1—C6—C5−73.3 (3)C12—N3—C13—N5−175.00 (17)
C8—N2—C7—N1179.19 (19)C19—C14—C15—C161.2 (3)
C8—N2—C7—S10.2 (2)N5—C14—C15—C16−179.46 (18)
C6—N1—C7—N2178.0 (2)C14—C15—C16—C17−1.6 (3)
C21—N1—C7—N2−6.9 (3)C15—C16—C17—C180.2 (3)
C6—N1—C7—S1−3.0 (3)C16—C17—C18—C191.6 (3)
C21—N1—C7—S1172.13 (18)C16—C17—C18—C23−177.98 (18)
C9—S1—C7—N20.49 (18)C17—C18—C19—C14−1.9 (3)
C9—S1—C7—N1−178.57 (19)C23—C18—C19—C14177.62 (18)
C7—N2—C8—C9−1.0 (3)C15—C14—C19—C180.6 (3)
C7—N2—C8—C22176.42 (19)N5—C14—C19—C18−178.72 (18)
N2—C8—C9—C10−178.7 (2)N4—C13—N5—C14−14.5 (3)
C22—C8—C9—C104.1 (4)N3—C13—N5—C14165.06 (19)
N2—C8—C9—S11.3 (2)C15—C14—N5—C13−160.93 (19)
C22—C8—C9—S1−175.77 (19)C19—C14—N5—C1318.4 (3)
C7—S1—C9—C8−0.97 (16)
D—H···AD—HH···AD···AD—H···A
N5—H5N···N3i0.882.223.097 (2)173
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N5—H5N⋯N3i0.882.223.097 (2)173

Symmetry code: (i) .

  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Synthesis of some new 5-(2-substituted-1,3-thiazol-5-yl)-2-hydroxy benzamides and their 2-alkoxy derivatives as possible antifungal agents.

Authors:  B Narayana; K K Vijaya Raj; B V Ashalatha; N Suchetha Kumari; B K Sarojini
Journal:  Eur J Med Chem       Date:  2004-10       Impact factor: 6.514

  2 in total

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