Literature DB >> 21522947

2,2-Dimethyl-5-[(pyridin-2-yl-amino)-methyl-idene]-1,3-dioxane-4,6-dione.

Jian-You Shi1, Jin-Qi Li, Rong-Sheng Tong, He Lin, Chen Lu.   

Abstract

In the title compound, C(12)H(12)N(2)O(4), the dihedral angle between the pyridine and enamine planes is 3.5 (3)°, while the angle between the dioxanedione (seven atoms) and enamine planes is 4.6 (3)°. The dioxane ring approximates an envelope conformation.

Entities:  

Year:  2011        PMID: 21522947      PMCID: PMC3051715          DOI: 10.1107/S1600536810053250

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

The title compound is an inter­mediate in the synthesis of 4(1H)-quinolone-based drugs. For the synthesis and structures of related anti­tumor precursors, see: Cassis et al. (1985 ▶); Ruchelman et al. (2003 ▶); Shi et al. (2009 ▶).

Experimental

Crystal data

C12H12N2O4 M = 248.24 Monoclinic, a = 8.7344 (10) Å b = 13.9712 (15) Å c = 9.4744 (11) Å β = 94.601 (11)° V = 1152.4 (2) Å3 Z = 4 Mo Kα radiation μ = 0.11 mm−1 T = 293 K 0.22 × 0.18 × 0.16 mm

Data collection

Oxford Diffraction Xcalibur diffractometer with an Eos CCD detector Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2009 ▶) T min = 0.997, T max = 1.0 4873 measured reflections 2334 independent reflections 1659 reflections with I > 2σ(I) R int = 0.018

Refinement

R[F 2 > 2σ(F 2)] = 0.040 wR(F 2) = 0.096 S = 1.03 2334 reflections 166 parameters 1 restraint H-atom parameters constrained Δρmax = 0.14 e Å−3 Δρmin = −0.14 e Å−3 Data collection: CrysAlis PRO (Oxford Diffraction, 2009 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: OLEX2 (Dolomanov et al., 2009 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810053250/bh2327sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810053250/bh2327Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C12H12N2O4F(000) = 520
Mr = 248.24Dx = 1.431 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.7107 Å
Hall symbol: -P 2ybcCell parameters from 1780 reflections
a = 8.7344 (10) Åθ = 3.1–29.2°
b = 13.9712 (15) ŵ = 0.11 mm1
c = 9.4744 (11) ÅT = 293 K
β = 94.601 (11)°Block, colourless
V = 1152.4 (2) Å30.22 × 0.18 × 0.16 mm
Z = 4
Oxford Diffraction Xcalibur diffractometer with an Eos CCD detector2334 independent reflections
Radiation source: fine-focus sealed tube1659 reflections with I > 2σ(I)
graphiteRint = 0.018
Detector resolution: 16.0874 pixels mm-1θmax = 26.4°, θmin = 3.4°
ω scansh = −10→9
Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2009)k = −17→16
Tmin = 0.997, Tmax = 1.0l = −11→11
4873 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.040H-atom parameters constrained
wR(F2) = 0.096w = 1/[σ2(Fo2) + (0.0383P)2 + 0.0655P] where P = (Fo2 + 2Fc2)/3
S = 1.03(Δ/σ)max < 0.001
2334 reflectionsΔρmax = 0.14 e Å3
166 parametersΔρmin = −0.14 e Å3
1 restraintExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
0 constraintsExtinction coefficient: 0.0060 (9)
Primary atom site location: structure-invariant direct methods
xyzUiso*/Ueq
O30.21039 (13)0.15916 (7)0.50800 (11)0.0497 (3)
O40.37760 (12)0.11610 (7)0.33485 (12)0.0504 (3)
C60.22965 (17)−0.10004 (11)0.49185 (16)0.0421 (4)
H60.1613−0.11340.55960.050*
O10.10857 (14)0.05240 (7)0.64457 (11)0.0556 (3)
O20.44968 (12)−0.03377 (8)0.30745 (12)0.0559 (3)
N20.29233 (14)−0.17386 (8)0.43038 (13)0.0455 (3)
H20.3571−0.16140.36920.055*
C70.25719 (16)−0.00541 (10)0.46383 (15)0.0388 (3)
N10.17056 (15)−0.28950 (8)0.55799 (13)0.0474 (4)
C10.1423 (2)−0.38227 (11)0.58158 (18)0.0532 (4)
H10.0776−0.39760.65150.064*
C90.18429 (18)0.06634 (10)0.54492 (16)0.0428 (4)
C80.36562 (17)0.02142 (11)0.36380 (16)0.0434 (4)
C50.26224 (16)−0.27096 (10)0.45637 (16)0.0400 (4)
C30.2993 (2)−0.43431 (11)0.40519 (18)0.0547 (5)
H30.3432−0.48290.35480.066*
C40.32929 (19)−0.34013 (11)0.37743 (17)0.0487 (4)
H40.3930−0.32330.30740.058*
C120.11654 (19)0.16341 (11)0.26210 (16)0.0493 (4)
H12B0.14520.17830.16890.074*
H12C0.03430.20480.28510.074*
H12A0.08330.09800.26490.074*
C110.3145 (2)0.27839 (11)0.36841 (19)0.0606 (5)
H11A0.35190.29230.27810.091*
H11C0.39690.28430.44120.091*
H11B0.23420.32260.38640.091*
C20.2036 (2)−0.45560 (11)0.50844 (18)0.0582 (5)
H2A0.1806−0.51890.52860.070*
C100.25227 (18)0.17780 (10)0.36764 (16)0.0439 (4)
U11U22U33U12U13U23
O30.0704 (8)0.0405 (6)0.0386 (6)−0.0001 (5)0.0061 (5)−0.0014 (5)
O40.0432 (7)0.0437 (6)0.0656 (8)−0.0011 (5)0.0137 (5)0.0085 (5)
C60.0384 (9)0.0485 (9)0.0395 (9)0.0012 (7)0.0042 (7)−0.0004 (7)
O10.0669 (8)0.0573 (7)0.0448 (7)0.0015 (6)0.0178 (6)0.0005 (5)
O20.0470 (7)0.0543 (7)0.0692 (8)0.0047 (6)0.0208 (6)0.0026 (6)
N20.0452 (8)0.0426 (8)0.0502 (8)0.0012 (6)0.0140 (6)0.0015 (6)
C70.0374 (8)0.0399 (8)0.0390 (8)−0.0006 (7)0.0034 (6)0.0022 (7)
N10.0516 (9)0.0447 (8)0.0471 (8)0.0022 (6)0.0102 (6)0.0016 (6)
C10.0620 (11)0.0477 (10)0.0511 (10)−0.0035 (9)0.0121 (8)0.0056 (8)
C90.0460 (9)0.0445 (9)0.0373 (9)−0.0010 (7)−0.0001 (7)0.0006 (7)
C80.0372 (9)0.0438 (9)0.0491 (9)−0.0005 (7)0.0020 (7)0.0017 (7)
C50.0376 (8)0.0403 (9)0.0418 (9)−0.0009 (7)0.0022 (6)0.0015 (7)
C30.0624 (12)0.0465 (10)0.0557 (11)0.0058 (8)0.0072 (9)−0.0100 (8)
C40.0478 (10)0.0521 (10)0.0477 (10)0.0015 (8)0.0123 (8)−0.0025 (7)
C120.0534 (10)0.0523 (9)0.0422 (10)0.0029 (8)0.0047 (7)0.0012 (7)
C110.0704 (13)0.0451 (10)0.0651 (12)−0.0087 (9)−0.0009 (9)0.0058 (8)
C20.0728 (13)0.0414 (9)0.0606 (12)−0.0031 (9)0.0069 (9)0.0017 (8)
C100.0495 (10)0.0411 (9)0.0419 (9)−0.0002 (7)0.0078 (7)0.0016 (7)
O3—C91.3671 (16)C1—C21.370 (2)
O3—C101.4311 (18)C5—C41.381 (2)
O4—C81.3567 (17)C3—H30.9300
O4—C101.4465 (18)C3—C41.371 (2)
C6—H60.9300C3—C21.370 (2)
C6—N21.3242 (18)C4—H40.9300
C6—C71.374 (2)C12—H12B0.9600
O1—C91.2112 (17)C12—H12C0.9600
O2—C81.2172 (17)C12—H12A0.9600
N2—H20.8600C12—C101.502 (2)
N2—C51.4072 (18)C11—H11A0.9600
C7—C91.442 (2)C11—H11C0.9600
C7—C81.442 (2)C11—H11B0.9600
N1—C11.3415 (19)C11—C101.507 (2)
N1—C51.3263 (18)C2—H2A0.9300
C1—H10.9300
O3—C9—C7115.68 (13)C5—N2—H2117.1
O3—C10—O4110.21 (11)C5—N1—C1116.06 (13)
O3—C10—C12110.33 (13)C5—C4—H4120.9
O3—C10—C11106.51 (12)C3—C4—C5118.16 (15)
O4—C8—C7116.85 (13)C3—C4—H4120.9
O4—C10—C12110.35 (12)C3—C2—C1118.99 (15)
O4—C10—C11106.15 (13)C3—C2—H2A120.5
C6—N2—H2117.1C4—C5—N2119.12 (13)
C6—N2—C5125.74 (13)C4—C3—H3120.6
C6—C7—C9118.33 (13)C12—C10—C11113.15 (13)
C6—C7—C8120.77 (14)H12B—C12—H12C109.5
O1—C9—O3117.68 (13)H12B—C12—H12A109.5
O1—C9—C7126.57 (14)H12C—C12—H12A109.5
O2—C8—O4118.03 (13)H11A—C11—H11C109.5
O2—C8—C7125.08 (14)H11A—C11—H11B109.5
N2—C6—H6117.3H11C—C11—H11B109.5
N2—C6—C7125.42 (14)C2—C1—H1118.2
C7—C6—H6117.3C2—C3—H3120.6
N1—C1—H1118.2C2—C3—C4118.84 (15)
N1—C1—C2123.64 (15)C10—C12—H12B109.5
N1—C5—N2116.58 (13)C10—C12—H12C109.5
N1—C5—C4124.30 (14)C10—C12—H12A109.5
C1—C2—H2A120.5C10—C11—H11A109.5
C9—O3—C10118.08 (11)C10—C11—H11C109.5
C9—C7—C8120.72 (13)C10—C11—H11B109.5
C8—O4—C10117.75 (11)
C6—N2—C5—N1−4.6 (2)C9—O3—C10—C11−165.07 (13)
C6—N2—C5—C4175.96 (15)C9—C7—C8—O4−9.6 (2)
C6—C7—C9—O3−177.16 (12)C9—C7—C8—O2168.03 (15)
C6—C7—C9—O16.0 (2)C8—O4—C10—O347.99 (17)
C6—C7—C8—O4175.36 (13)C8—O4—C10—C12−74.10 (16)
C6—C7—C8—O2−7.0 (2)C8—O4—C10—C11162.95 (12)
N2—C6—C7—C9−177.35 (14)C8—C7—C9—O37.7 (2)
N2—C6—C7—C8−2.2 (2)C8—C7—C9—O1−169.19 (15)
N2—C5—C4—C3179.53 (14)C5—N1—C1—C20.7 (2)
C7—C6—N2—C5−178.57 (14)C4—C3—C2—C1−0.7 (3)
N1—C1—C2—C30.0 (3)C2—C3—C4—C50.6 (2)
N1—C5—C4—C30.2 (2)C10—O3—C9—O1−159.37 (14)
C1—N1—C5—N2179.83 (13)C10—O3—C9—C723.48 (19)
C1—N1—C5—C4−0.8 (2)C10—O4—C8—O2162.84 (14)
C9—O3—C10—O4−50.35 (17)C10—O4—C8—C7−19.38 (19)
C9—O3—C10—C1271.76 (16)
  3 in total

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2.  5H-Dibenzo[c,h]1,6-naphthyridin-6-ones: novel topoisomerase I-targeting anticancer agents with potent cytotoxic activity.

Authors:  Alexander L Ruchelman; Sudhir K Singh; Abhijit Ray; Xiao Hua Wu; Jin-Ming Yang; Tsai-Kun Li; Angela Liu; Leroy F Liu; Edmond J LaVoie
Journal:  Bioorg Med Chem       Date:  2003-05-01       Impact factor: 3.641

3.  5-(4-Bromo-anilinomethyl-ene)-2,2-dimethyl-1,3-dioxane-4,6-dione.

Authors:  Jian-You Shi; Jin-Cheng Yang; Jin-Liang Yang
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  3 in total

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