Literature DB >> 21522917

Bis(2-amino-6-methyl-pyridinium) trans-diaqua-bis-(pyrazine-2,3-dicarboxyl-ato)cobaltate(II) octa-hydrate.

Hossein Eshtiagh-Hosseini, Nafiseh Alfi, Masoud Mirzaei, Philip E Fanwick.   

Abstract

The title compound, (C(6)H(9)N(2))(2)[Co(C(6)H(2)N(2)O(4))(2)(H(2)O)(2)]·8H(2)O, was obtained by the reaction of CoCl(2)·6H(2)O with 1,4-pyrazine-2,3-dicarb-oxy-lic acid and 2-amino-6-methyl-pyridine in aqueous solution (molar ratio 1:2:2). The Co(II) ion is situated on an inversion centre and is coordinated by two O and two N atoms of two symmetry-related 1,4-pyrazine-2,3-dicarboxyl-ate ligands and two water mol-ecules and has a disorted octa-hedral coordination environment. The asymmetric unit also contains four water mol-ecules. In the crystal, extensive inter-molecular classical N-H⋯O, O-H⋯O and O-H⋯N hydrogen bonds and π-π stacking inter-actions [centroid-centroid distance = 3.490 (1) Å] connect the various components, forming a three-dimensional network.

Entities:  

Year:  2011        PMID: 21522917      PMCID: PMC3051538          DOI: 10.1107/S1600536811001127

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related structures based on 1,4-pyrazine-2,3-dicarboxylate ligands, see: Eshtiagh-Hosseini, Alfi et al. (2010 ▶). Eshtiagh-Hosseini, Gschwind et al. (2010 ▶). Eshtiagh-Hosseini, Necas et al. (2010 ▶).

Experimental

Crystal data

(C6H9N2)2[Co(C6H2N2O4)2(H2O)2]·8H2O M = 789.58 Triclinic, a = 6.8570 (4) Å b = 10.2348 (5) Å c = 13.6403 (10) Å α = 109.604 (4)° β = 90.424 (5)° γ = 105.524 (4)° V = 863.89 (9) Å3 Z = 1 Cu Kα radiation μ = 4.68 mm−1 T = 150 K 0.20 × 0.18 × 0.14 mm

Data collection

Rigaku RAPID II diffractometer Absorption correction: multi-scan (SCALEPACK; Otwinowski & Minor, 1997 ▶) T min = 0.280, T max = 0.508 19137 measured reflections 3152 independent reflections 3151 reflections with > 2.0σ(I) R int = 0.036

Refinement

R[F 2 > 2σ(F 2)] = 0.030 wR(F 2) = 0.087 S = 1.04 3152 reflections 285 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.23 e Å−3 Δρmin = −0.40 e Å−3 Data collection: CrystalClear (Molecular Structure Corporation & Rigaku, 2001 ▶); cell refinement: DENZO/SCALEPACK (Otwinowski & Minor, 1997 ▶); data reduction: DENZO/SCALEPACK; program(s) used to solve structure: SIR2004 (Burla et al., 2005 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP (Johnson, 1976 ▶) and PLATON (Spek, 2009 ▶); software used to prepare material for publication: SHELXL97 and local programs. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536811001127/bt5444sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536811001127/bt5444Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
(C6H9N2)2[Co(C6H2N2O4)2(H2O)2]·8H2OZ = 1
Mr = 789.58F(000) = 413
Triclinic, P1Dx = 1.518 Mg m3
Hall symbol: -P 1Cu - Kα radiation, λ = 1.54184 Å
a = 6.8570 (4) ÅCell parameters from 3181 reflections
b = 10.2348 (5) Åθ = 3–71°
c = 13.6403 (10) ŵ = 4.68 mm1
α = 109.604 (4)°T = 150 K
β = 90.424 (5)°Chunk, brown
γ = 105.524 (4)°0.20 × 0.18 × 0.14 mm
V = 863.89 (9) Å3
Rigaku RAPID II diffractometer3151 reflections with > 2.0σ(I)
confocal opticsRint = 0.036
ω scansθmax = 71.9°, θmin = 3.5°
Absorption correction: multi-scan (SCALEPACK; Otwinowski & Minor, 1997)h = 0→8
Tmin = 0.280, Tmax = 0.508k = −12→12
19137 measured reflectionsl = −16→16
3152 independent reflections
Refinement on F20 restraints
Least-squares matrix: fullH atoms treated by a mixture of independent and constrained refinement
R[F2 > 2σ(F2)] = 0.030w = 1/[σ2(Fo2) + (0.057P)2 + 0.2735P] where P = (Fo2 + 2Fc2)/3
wR(F2) = 0.087(Δ/σ)max = 0.001
S = 1.04Δρmax = 0.23 e Å3
3152 reflectionsΔρmin = −0.40 e Å3
285 parameters
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement on F2 for ALL reflections except for 0 with very negative F2 or flagged by the user for potential systematic errors. Weighted R-factors wR and all goodnesses of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The observed criterion of F2 > σ(F2) is used only for calculating R_factor_obs etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Co11.00000.50000.00000.01861 (12)
O1W0.78751 (19)0.34893 (13)−0.12293 (10)0.0281 (3)
O210.79587 (17)0.45953 (12)0.10552 (10)0.0244 (3)
O220.70494 (18)0.32395 (14)0.20508 (10)0.0309 (3)
O2W0.4756 (2)0.56148 (13)0.22356 (12)0.0277 (3)
O310.97825 (17)0.20966 (12)0.31826 (9)0.0257 (3)
O320.77764 (18)0.02378 (12)0.18707 (10)0.0278 (3)
O3W0.6610 (2)0.37101 (15)0.42401 (11)0.0318 (3)
O4W0.3166 (2)0.44434 (16)0.37295 (12)0.0307 (3)
O5W0.3645 (2)0.92255 (14)0.12233 (11)0.0301 (3)
N11.08935 (19)0.33770 (13)0.03478 (10)0.0185 (3)
N41.1850 (2)0.14113 (14)0.11111 (11)0.0212 (3)
N110.82673 (19)0.07875 (14)0.46263 (11)0.0201 (3)
N120.6818 (2)−0.13230 (16)0.32292 (12)0.0243 (3)
C20.9819 (2)0.29538 (15)0.10633 (12)0.0179 (3)
C31.0303 (2)0.19613 (16)0.14422 (13)0.0188 (3)
C51.2920 (2)0.18647 (17)0.04140 (13)0.0219 (3)
C61.2436 (2)0.28428 (17)0.00249 (13)0.0213 (3)
C120.7163 (2)−0.06269 (17)0.42549 (13)0.0200 (3)
C130.6442 (2)−0.12847 (18)0.49910 (14)0.0240 (4)
C140.6901 (3)−0.0497 (2)0.60314 (15)0.0286 (4)
C150.8071 (3)0.0960 (2)0.63821 (14)0.0281 (4)
C160.8729 (2)0.15970 (18)0.56645 (14)0.0239 (3)
C170.9948 (3)0.31426 (18)0.59367 (16)0.0307 (4)
C210.8125 (2)0.36383 (17)0.14298 (13)0.0215 (3)
C310.9158 (2)0.13968 (17)0.22335 (13)0.0211 (3)
H51.40180.15160.01830.026*
H61.32000.3128−0.04670.026*
H110.869 (3)0.117 (2)0.4202 (17)0.023 (5)*
H130.5660−0.22480.47680.029*
H140.6432−0.09300.65180.034*
H150.83940.14850.70950.034*
H1210.618 (3)−0.223 (3)0.3014 (17)0.032 (5)*
H1220.716 (3)−0.086 (3)0.2827 (19)0.035 (6)*
H17A1.12250.31850.56460.046*
H17B1.01940.36000.66840.046*
H17C0.92100.36360.56550.046*
H1W10.712 (4)0.374 (3)−0.150 (2)0.044 (7)*
H1W20.729 (4)0.263 (3)−0.1249 (19)0.045 (7)*
H2W10.561 (4)0.520 (3)0.191 (2)0.052 (7)*
H2W20.431 (4)0.528 (3)0.260 (2)0.037 (7)*
H3W10.728 (4)0.345 (3)0.378 (2)0.046 (7)*
H3W20.564 (4)0.389 (3)0.399 (2)0.050 (7)*
H4W10.300 (4)0.493 (3)0.430 (2)0.039 (7)*
H4W20.219 (4)0.375 (3)0.356 (2)0.051 (7)*
H5W10.478 (4)0.970 (3)0.145 (2)0.049 (7)*
H5W20.304 (4)0.977 (3)0.125 (2)0.042 (7)*
U11U22U33U12U13U23
Co10.02261 (19)0.01812 (18)0.0174 (2)0.00806 (13)0.00137 (13)0.00745 (14)
O1W0.0329 (6)0.0208 (6)0.0290 (8)0.0054 (5)−0.0089 (5)0.0086 (5)
O210.0262 (6)0.0268 (6)0.0269 (7)0.0142 (5)0.0064 (5)0.0126 (5)
O220.0295 (6)0.0455 (7)0.0302 (8)0.0197 (5)0.0137 (5)0.0219 (6)
O2W0.0279 (6)0.0239 (6)0.0322 (8)0.0108 (5)0.0006 (5)0.0083 (6)
O310.0292 (6)0.0268 (6)0.0191 (7)0.0024 (5)−0.0001 (5)0.0100 (5)
O320.0292 (6)0.0258 (6)0.0242 (7)−0.0011 (5)−0.0008 (5)0.0105 (5)
O3W0.0355 (7)0.0367 (7)0.0249 (8)0.0124 (6)0.0078 (6)0.0113 (6)
O4W0.0306 (7)0.0281 (6)0.0273 (9)0.0037 (6)0.0009 (5)0.0058 (6)
O5W0.0247 (6)0.0248 (6)0.0455 (9)0.0092 (5)0.0019 (5)0.0166 (6)
N10.0216 (6)0.0175 (6)0.0158 (7)0.0058 (5)0.0009 (5)0.0051 (5)
N40.0232 (6)0.0203 (6)0.0211 (8)0.0084 (5)0.0008 (5)0.0069 (5)
N110.0193 (6)0.0221 (6)0.0213 (8)0.0071 (5)0.0034 (5)0.0098 (6)
N120.0257 (7)0.0217 (7)0.0235 (9)0.0014 (6)0.0001 (6)0.0098 (6)
C20.0194 (7)0.0173 (7)0.0152 (9)0.0045 (5)0.0001 (6)0.0040 (6)
C30.0193 (7)0.0178 (7)0.0167 (9)0.0035 (5)−0.0015 (6)0.0042 (6)
C50.0224 (7)0.0232 (7)0.0205 (9)0.0101 (6)0.0038 (6)0.0053 (6)
C60.0233 (7)0.0223 (7)0.0192 (9)0.0081 (6)0.0061 (6)0.0070 (6)
C120.0157 (7)0.0239 (7)0.0232 (10)0.0081 (6)0.0024 (6)0.0099 (7)
C130.0206 (7)0.0264 (8)0.0288 (11)0.0072 (6)0.0056 (6)0.0139 (7)
C140.0259 (8)0.0404 (10)0.0286 (11)0.0145 (7)0.0109 (7)0.0194 (8)
C150.0276 (8)0.0383 (9)0.0201 (10)0.0159 (7)0.0057 (7)0.0072 (8)
C160.0200 (7)0.0268 (8)0.0260 (10)0.0123 (6)0.0021 (6)0.0062 (7)
C170.0326 (9)0.0248 (8)0.0312 (11)0.0111 (7)−0.0016 (7)0.0031 (7)
C210.0211 (7)0.0243 (8)0.0196 (9)0.0086 (6)0.0009 (6)0.0066 (7)
C310.0214 (7)0.0220 (7)0.0230 (10)0.0079 (6)0.0019 (6)0.0104 (7)
Co1—O21i2.0790 (12)N11—C121.357 (2)
Co1—O212.0790 (11)N11—C161.363 (2)
Co1—O1W2.0841 (12)N11—H110.82 (2)
Co1—O1Wi2.0841 (12)N12—C121.325 (2)
Co1—N12.1045 (12)N12—H1210.86 (2)
Co1—N1i2.1045 (12)N12—H1220.84 (2)
O1W—H1W10.77 (3)C2—C31.393 (2)
O1W—H1W20.86 (3)C2—C211.516 (2)
O21—C211.2760 (19)C3—C311.518 (2)
O22—C211.228 (2)C5—C61.388 (2)
O2W—H2W10.85 (3)C5—H50.9300
O2W—H2W20.72 (3)C6—H60.9300
O31—C311.256 (2)C12—C131.410 (2)
O32—C311.244 (2)C13—C141.361 (3)
O3W—H3W10.80 (3)C13—H130.9300
O3W—H3W20.84 (3)C14—C151.404 (3)
O4W—H4W10.80 (3)C14—H140.9300
O4W—H4W20.80 (3)C15—C161.365 (3)
O5W—H5W10.79 (3)C15—H150.9300
O5W—H5W20.77 (3)C16—C171.494 (2)
N1—C61.329 (2)C17—H17A0.9600
N1—C21.344 (2)C17—H17B0.9600
N4—C51.335 (2)C17—H17C0.9600
N4—C31.342 (2)
O21i—Co1—O21180.00 (7)N4—C3—C2121.24 (14)
O21i—Co1—O1W90.50 (5)N4—C3—C31114.49 (13)
O21—Co1—O1W89.50 (5)C2—C3—C31124.27 (14)
O21i—Co1—O1Wi89.50 (5)N4—C5—C6121.69 (14)
O21—Co1—O1Wi90.50 (5)N4—C5—H5119.20
O1W—Co1—O1Wi180.00 (6)C6—C5—H5119.20
O21i—Co1—N1100.88 (5)N1—C6—C5120.75 (14)
O21—Co1—N179.12 (5)N1—C6—H6119.60
O1W—Co1—N192.48 (5)C5—C6—H6119.60
O1Wi—Co1—N187.52 (5)N12—C12—N11119.07 (15)
O21i—Co1—N1i79.12 (5)N12—C12—C13123.23 (15)
O21—Co1—N1i100.88 (5)N11—C12—C13117.70 (15)
O1W—Co1—N1i87.52 (5)C14—C13—C12119.36 (15)
O1Wi—Co1—N1i92.48 (5)C14—C13—H13120.30
N1—Co1—N1i180.00 (6)C12—C13—H13120.30
Co1—O1W—H1W1119.7 (19)C13—C14—C15121.07 (16)
Co1—O1W—H1W2122.8 (17)C13—C14—H14119.50
H1W1—O1W—H1W2109 (2)C15—C14—H14119.50
C21—O21—Co1116.29 (10)C16—C15—C14119.19 (17)
H2W1—O2W—H2W2110 (3)C16—C15—H15120.40
H3W1—O3W—H3W2108 (3)C14—C15—H15120.40
H4W1—O4W—H4W2104 (3)N11—C16—C15118.88 (15)
H5W1—O5W—H5W2106 (3)N11—C16—C17116.76 (16)
C6—N1—C2118.50 (13)C15—C16—C17124.35 (17)
C6—N1—Co1128.65 (11)C16—C17—H17A109.50
C2—N1—Co1112.57 (10)C16—C17—H17B109.50
C5—N4—C3117.44 (13)H17A—C17—H17B109.50
C12—N11—C16123.77 (15)C16—C17—H17C109.50
C12—N11—H11117.9 (15)H17A—C17—H17C109.50
C16—N11—H11118.3 (15)H17B—C17—H17C109.50
C12—N12—H121117.3 (15)O22—C21—O21125.85 (15)
C12—N12—H122119.2 (16)O22—C21—C2118.38 (14)
H121—N12—H122123 (2)O21—C21—C2115.77 (13)
N1—C2—C3120.37 (14)O32—C31—O31126.69 (15)
N1—C2—C21116.14 (13)O32—C31—C3116.34 (15)
C3—C2—C21123.47 (14)O31—C31—C3116.80 (13)
O21i—Co1—O21—C21113 (47)C3—N4—C5—C6−1.4 (2)
O1W—Co1—O21—C2193.19 (12)C2—N1—C6—C50.3 (2)
O1Wi—Co1—O21—C21−86.81 (12)Co1—N1—C6—C5173.81 (11)
N1—Co1—O21—C210.57 (11)N4—C5—C6—N10.9 (2)
N1i—Co1—O21—C21−179.43 (11)C16—N11—C12—N12−179.22 (14)
O21i—Co1—N1—C63.94 (14)C16—N11—C12—C130.6 (2)
O21—Co1—N1—C6−176.06 (14)N12—C12—C13—C14178.72 (15)
O1W—Co1—N1—C694.93 (14)N11—C12—C13—C14−1.1 (2)
O1Wi—Co1—N1—C6−85.07 (14)C12—C13—C14—C150.3 (2)
N1i—Co1—N1—C685 (62)C13—C14—C15—C161.0 (2)
O21i—Co1—N1—C2177.76 (10)C12—N11—C16—C150.7 (2)
O21—Co1—N1—C2−2.24 (10)C12—N11—C16—C17−179.59 (14)
O1W—Co1—N1—C2−91.26 (11)C14—C15—C16—N11−1.5 (2)
O1Wi—Co1—N1—C288.74 (11)C14—C15—C16—C17178.83 (15)
N1i—Co1—N1—C2−102 (62)Co1—O21—C21—O22−179.10 (14)
C6—N1—C2—C3−0.9 (2)Co1—O21—C21—C21.06 (18)
Co1—N1—C2—C3−175.43 (11)N1—C2—C21—O22177.04 (14)
C6—N1—C2—C21177.95 (13)C3—C2—C21—O22−4.1 (2)
Co1—N1—C2—C213.44 (16)N1—C2—C21—O21−3.1 (2)
C5—N4—C3—C20.7 (2)C3—C2—C21—O21175.73 (14)
C5—N4—C3—C31−179.98 (13)N4—C3—C31—O32−85.16 (17)
N1—C2—C3—N40.4 (2)C2—C3—C31—O3294.11 (19)
C21—C2—C3—N4−178.37 (14)N4—C3—C31—O3190.54 (17)
N1—C2—C3—C31−178.80 (14)C2—C3—C31—O31−90.20 (19)
C21—C2—C3—C312.4 (2)
D—H···AD—HH···AD···AD—H···A
N11—H11···O310.82 (2)1.98 (2)2.794 (3)179 (2)
N12—H121···O2Wii0.86 (3)2.05 (2)2.900 (2)170 (2)
N12—H122···O320.84 (3)1.97 (3)2.804 (3)176 (2)
O1W—H1W1···O2Wiii0.78 (3)1.99 (3)2.770 (3)178 (3)
O1W—H1W2···O5Wiii0.85 (3)1.85 (3)2.697 (2)172 (3)
O2W—H2W1···O210.85 (3)2.10 (3)2.942 (3)168 (3)
O2W—H2W2···O4W0.72 (3)2.07 (3)2.784 (3)176 (2)
O3W—H3W2···O4W0.83 (3)1.99 (3)2.811 (3)167 (3)
O4W—H4W1···O3Wiv0.80 (3)1.98 (2)2.755 (2)165 (3)
O4W—H4W2···O31v0.80 (2)1.94 (2)2.738 (2)178 (3)
O5W—H5W1···O32vi0.79 (2)2.00 (3)2.767 (2)161 (3)
O5W—H5W2···N4vii0.77 (3)2.11 (3)2.871 (3)167 (3)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N11—H11⋯O310.82 (2)1.98 (2)2.794 (3)179 (2)
N12—H121⋯O2Wi0.86 (3)2.05 (2)2.900 (2)170 (2)
N12—H122⋯O320.84 (3)1.97 (3)2.804 (3)176 (2)
O1W—H1W1⋯O2Wii0.78 (3)1.99 (3)2.770 (3)178 (3)
O1W—H1W2⋯O5Wii0.85 (3)1.85 (3)2.697 (2)172 (3)
O2W—H2W1⋯O210.85 (3)2.10 (3)2.942 (3)168 (3)
O2W—H2W2⋯O4W0.72 (3)2.07 (3)2.784 (3)176 (2)
O3W—H3W2⋯O4W0.83 (3)1.99 (3)2.811 (3)167 (3)
O4W—H4W1⋯O3Wiii0.80 (3)1.98 (2)2.755 (2)165 (3)
O4W—H4W2⋯O31iv0.80 (2)1.94 (2)2.738 (2)178 (3)
O5W—H5W1⋯O32v0.79 (2)2.00 (3)2.767 (2)161 (3)
O5W—H5W2⋯N4vi0.77 (3)2.11 (3)2.871 (3)167 (3)

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) ; (vi) .

  5 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Bis(2-amino-4-methyl-pyrimidin-3-ium) trans-diaqua-bis-(pyrazine-2,3-di-car-boxylato)cobaltate(II) hexa-hydrate.

Authors:  Hossein Eshtiagh-Hosseini; Marek Necas; Nafiseh Alfi; Masoud Mirzaei
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-09-30

3.  1,4-Diazo-niacyclo-hexane bis-(3-carb-oxy-pyrazine-2-carboxyl-ate) dihydrate.

Authors:  Hossein Eshtiagh-Hosseini; Nafiseh Alfi; Masoud Mirzaei; Marek Necas
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-10-13

4.  Bis(2-amino-4-methyl-pyridinium) trans-diaqua-bis-(pyrazine-2,3-dicarboxyl-ato)cuprate(II) hexa-hydrate.

Authors:  Hossein Eshtiagh-Hosseini; Fabienne Gschwind; Nafiseh Alfi; Masoud Mirzaei
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-06-23

5.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  5 in total
  1 in total

1.  Bis(2-amino-6-methyl-pyridinium) trans-diaqua-bis-(pyrazine-2,3-dicarboxyl-ato)cuprate(II) hexa-hydrate.

Authors:  Hossein Eshtiagh-Hosseini; Azam Hassanpoor; Masoud Mirzaei; Teresa Szymańska-Buzar; Andrzej Kochel
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-03-15
  1 in total

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