Literature DB >> 21522823

Diaqua-[3,5-bis-(4-pyrid-yl)-1H-1,2,4-triazole-κN](pyridine-2,6-dicarboxyl-ato-κO,N,O)nickel(II).

Feng-Jie Cheng, Yi-Sen Wang, Yan-Cheng Liu.   

Abstract

In the title compound, [Ni(C(7)H(3)NO(4))(C(12)H(9)N(5))(H(2)O)(2)], the Ni(II) atom is coordinated in a distorted octa-hedral geometry by one N and two O atoms from a pyridine-2,6-dicarboxyl-ate ligand, one N atom from a 3,5-bis-(4-pyrid-yl)-1H-1,2,4-triazole ligand in equatorial positions and two water mol-ecules in axial positions. The crystal packing is consolidated by inter-molecular O-H⋯O, O-H⋯N and N-H⋯O hydrogen bonds.

Entities:  

Year:  2011        PMID: 21522823      PMCID: PMC3051425          DOI: 10.1107/S1600536810053687

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For synthesis of the 1H-3,5-bis­(4-pyrid­yl)-1,2,4-triazole (BPT) ligand, see: Liu et al. (2004 ▶). For BPTmetal complexes, see: Huang et al. (2010a ▶,b ▶).

Experimental

Crystal data

[Ni(C7H3NO4)(C12H9N5)(H2O)2] M = 483.07 Monoclinic, a = 26.434 (5) Å b = 6.0190 (12) Å c = 26.170 (5) Å β = 105.69 (3)° V = 4008.7 (13) Å3 Z = 8 Mo Kα radiation μ = 1.02 mm−1 T = 293 K 0.32 × 0.21 × 0.11 mm

Data collection

Bruker SMART CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.768, T max = 0.910 10662 measured reflections 3534 independent reflections 2669 reflections with I > 2σ(I) R int = 0.071

Refinement

R[F 2 > 2σ(F 2)] = 0.063 wR(F 2) = 0.104 S = 1.11 3534 reflections 310 parameters 7 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.33 e Å−3 Δρmin = −0.33 e Å−3 Data collection: SMART (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: PLATON (Spek, 2009 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810053687/cv5017sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810053687/cv5017Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Ni(C7H3NO4)(C12H9N5)(H2O)2]F(000) = 1984
Mr = 483.07Dx = 1.601 Mg m3
Monoclinic, C2/cMo Kα radiation, λ = 0.71073 Å
a = 26.434 (5) Åθ = 1.5–25.1°
b = 6.0190 (12) ŵ = 1.02 mm1
c = 26.170 (5) ÅT = 293 K
β = 105.69 (3)°Block, green
V = 4008.7 (13) Å30.32 × 0.21 × 0.11 mm
Z = 8
Bruker SMART CCD area-detector diffractometer3534 independent reflections
Radiation source: fine-focus sealed tube2669 reflections with I > 2σ(I)
graphiteRint = 0.071
phi and ω scansθmax = 25.1°, θmin = 3.2°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −31→31
Tmin = 0.768, Tmax = 0.910k = −6→7
10662 measured reflectionsl = −31→30
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.063H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.104w = 1/[σ2(Fo2) + (0.0251P)2 + 7.5822P] where P = (Fo2 + 2Fc2)/3
S = 1.11(Δ/σ)max < 0.001
3534 reflectionsΔρmax = 0.33 e Å3
310 parametersΔρmin = −0.33 e Å3
7 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.00023 (7)
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Ni10.226457 (19)0.64878 (9)0.08540 (2)0.02533 (18)
C10.16122 (16)0.9930 (7)0.02297 (17)0.0284 (10)
C20.12404 (14)0.8314 (7)0.03879 (16)0.0246 (9)
C30.06954 (15)0.8470 (7)0.02545 (18)0.0350 (11)
H3A0.05210.96240.00430.042*
C40.04206 (16)0.6862 (8)0.04454 (19)0.0412 (12)
H4A0.00560.69290.03630.049*
C50.06859 (15)0.5162 (7)0.07569 (18)0.0341 (11)
H5A0.05040.40750.08870.041*
C60.12286 (14)0.5098 (7)0.08726 (16)0.0240 (10)
C70.16017 (15)0.3376 (7)0.11997 (16)0.0277 (10)
C80.34025 (16)0.7559 (7)0.09586 (18)0.0354 (11)
H8A0.32700.89090.08070.042*
C90.39403 (16)0.7200 (7)0.10786 (18)0.0334 (11)
H9A0.41610.82940.10090.040*
C100.41453 (15)0.5203 (7)0.13023 (17)0.0296 (10)
C110.37953 (15)0.3656 (7)0.13924 (18)0.0364 (11)
H11A0.39160.22910.15430.044*
C120.32645 (16)0.4132 (7)0.12595 (19)0.0361 (12)
H12A0.30360.30520.13200.043*
C130.47160 (15)0.4758 (7)0.14512 (17)0.0299 (10)
C140.54546 (15)0.3328 (8)0.17986 (16)0.0302 (10)
C150.58930 (16)0.1971 (7)0.21043 (17)0.0318 (11)
C160.64134 (17)0.2613 (8)0.2184 (2)0.0485 (14)
H16A0.64970.39180.20350.058*
C170.68063 (18)0.1269 (9)0.2492 (2)0.0579 (16)
H17A0.71530.17260.25440.070*
C180.62206 (18)−0.1208 (8)0.26260 (19)0.0441 (13)
H18A0.6149−0.25350.27740.053*
C190.57996 (17)0.0004 (8)0.23279 (18)0.0388 (12)
H19A0.5458−0.05070.22800.047*
N10.14859 (11)0.6669 (5)0.06894 (13)0.0231 (8)
N20.30646 (12)0.6050 (6)0.10502 (14)0.0282 (9)
N30.49458 (12)0.3023 (6)0.17511 (14)0.0329 (9)
N40.50503 (12)0.6110 (6)0.13012 (15)0.0363 (10)
N50.55201 (13)0.5164 (6)0.15348 (15)0.0352 (10)
N60.67239 (15)−0.0606 (7)0.27162 (16)0.0473 (11)
O10.20996 (10)0.9403 (4)0.03895 (11)0.0304 (7)
O20.14263 (11)1.1605 (5)−0.00256 (12)0.0382 (8)
O30.20889 (10)0.3681 (5)0.12533 (11)0.0312 (7)
O40.14157 (11)0.1758 (5)0.13800 (13)0.0427 (8)
O50.21976 (13)0.4697 (5)0.01727 (13)0.0394 (8)
O60.23372 (12)0.8463 (6)0.15262 (13)0.0394 (8)
H5C0.1995 (14)0.360 (5)0.0075 (17)0.055 (16)*
H6B0.2635 (11)0.861 (8)0.1761 (15)0.070 (19)*
H5B0.2419 (14)0.479 (7)−0.0008 (16)0.060 (17)*
H50.5810 (13)0.575 (8)0.147 (2)0.076 (19)*
H6C0.222 (2)0.977 (5)0.145 (3)0.17 (4)*
U11U22U33U12U13U23
Ni10.0181 (3)0.0257 (3)0.0334 (3)−0.0014 (3)0.0092 (2)0.0005 (3)
C10.030 (3)0.029 (3)0.024 (3)−0.004 (2)0.004 (2)−0.003 (2)
C20.024 (2)0.023 (2)0.027 (2)−0.0006 (19)0.0068 (19)−0.001 (2)
C30.026 (2)0.029 (2)0.046 (3)0.003 (2)0.003 (2)0.007 (2)
C40.020 (2)0.044 (3)0.059 (3)0.001 (2)0.010 (2)0.007 (3)
C50.024 (2)0.033 (3)0.048 (3)−0.006 (2)0.013 (2)0.010 (2)
C60.021 (2)0.025 (2)0.027 (2)−0.0019 (18)0.0075 (19)0.001 (2)
C70.028 (2)0.027 (2)0.030 (2)−0.002 (2)0.011 (2)−0.001 (2)
C80.027 (2)0.032 (3)0.045 (3)0.002 (2)0.005 (2)0.009 (2)
C90.027 (2)0.029 (3)0.046 (3)−0.0044 (19)0.013 (2)0.007 (2)
C100.023 (2)0.032 (3)0.034 (3)−0.0009 (19)0.008 (2)0.000 (2)
C110.026 (2)0.030 (3)0.056 (3)0.003 (2)0.014 (2)0.012 (2)
C120.023 (2)0.033 (3)0.054 (3)−0.001 (2)0.012 (2)0.010 (2)
C130.020 (2)0.038 (3)0.032 (3)0.002 (2)0.007 (2)0.008 (2)
C140.022 (2)0.037 (3)0.032 (3)0.003 (2)0.007 (2)0.010 (2)
C150.027 (2)0.040 (3)0.029 (3)0.003 (2)0.009 (2)0.007 (2)
C160.026 (3)0.055 (3)0.064 (4)0.005 (2)0.013 (3)0.034 (3)
C170.027 (3)0.072 (4)0.073 (4)0.007 (3)0.011 (3)0.033 (3)
C180.044 (3)0.042 (3)0.044 (3)0.004 (2)0.009 (3)0.012 (3)
C190.030 (3)0.044 (3)0.041 (3)0.001 (2)0.006 (2)0.007 (2)
N10.0214 (18)0.0195 (18)0.0280 (19)−0.0029 (16)0.0057 (16)−0.0002 (17)
N20.0193 (18)0.031 (2)0.033 (2)−0.0017 (16)0.0054 (16)−0.0002 (17)
N30.0222 (19)0.038 (2)0.040 (2)0.0020 (17)0.0104 (18)0.0104 (19)
N40.0206 (19)0.038 (2)0.052 (3)0.0041 (17)0.0113 (18)0.015 (2)
N50.017 (2)0.039 (2)0.049 (3)0.0041 (17)0.0074 (19)0.014 (2)
N60.035 (2)0.057 (3)0.047 (3)0.012 (2)0.005 (2)0.021 (2)
O10.0237 (16)0.0296 (17)0.0403 (19)−0.0028 (13)0.0129 (14)0.0045 (15)
O20.0390 (18)0.0273 (17)0.0454 (19)−0.0032 (15)0.0063 (15)0.0097 (17)
O30.0206 (15)0.0348 (17)0.0394 (18)0.0019 (14)0.0103 (14)0.0095 (15)
O40.0305 (17)0.0379 (19)0.061 (2)−0.0006 (15)0.0153 (16)0.0213 (18)
O50.044 (2)0.036 (2)0.046 (2)−0.0169 (17)0.0237 (18)−0.0124 (17)
O60.0326 (19)0.044 (2)0.036 (2)0.0048 (17)−0.0016 (16)−0.0132 (18)
Ni1—N11.989 (3)C10—C131.477 (5)
Ni1—O52.050 (3)C11—C121.381 (5)
Ni1—N22.054 (3)C11—H11A0.9300
Ni1—O62.088 (3)C12—N21.325 (5)
Ni1—O32.103 (3)C12—H12A0.9300
Ni1—O12.112 (3)C13—N41.336 (5)
C1—O21.236 (5)C13—N31.348 (5)
C1—O11.282 (4)C14—N31.330 (5)
C1—C21.518 (5)C14—N51.339 (5)
C2—N11.322 (5)C14—C151.466 (6)
C2—C31.391 (5)C15—C191.372 (6)
C3—C41.382 (6)C15—C161.389 (6)
C3—H3A0.9300C16—C171.389 (6)
C4—C51.376 (6)C16—H16A0.9300
C4—H4A0.9300C17—N61.317 (6)
C5—C61.384 (5)C17—H17A0.9300
C5—H5A0.9300C18—N61.337 (5)
C6—N11.328 (5)C18—C191.382 (6)
C6—C71.524 (6)C18—H18A0.9300
C7—O41.241 (5)C19—H19A0.9300
C7—O31.271 (4)N4—N51.352 (4)
C8—N21.340 (5)N5—H50.901 (19)
C8—C91.387 (5)O5—H5C0.842 (18)
C8—H8A0.9300O5—H5B0.848 (18)
C9—C101.382 (6)O6—H6B0.861 (19)
C9—H9A0.9300O6—H6C0.854 (19)
C10—C111.377 (5)
N1—Ni1—O589.97 (13)C10—C11—H11A120.0
N1—Ni1—N2175.33 (14)C12—C11—H11A120.0
O5—Ni1—N289.48 (14)N2—C12—C11123.3 (4)
N1—Ni1—O690.30 (13)N2—C12—H12A118.3
O5—Ni1—O6177.00 (14)C11—C12—H12A118.3
N2—Ni1—O690.49 (13)N4—C13—N3114.4 (3)
N1—Ni1—O378.29 (12)N4—C13—C10121.4 (4)
O5—Ni1—O391.78 (12)N3—C13—C10124.2 (4)
N2—Ni1—O397.09 (12)N3—C14—N5109.5 (4)
O6—Ni1—O391.20 (13)N3—C14—C15127.2 (4)
N1—Ni1—O177.83 (12)N5—C14—C15123.2 (4)
O5—Ni1—O188.88 (13)C19—C15—C16117.4 (4)
N2—Ni1—O1106.79 (12)C19—C15—C14120.4 (4)
O6—Ni1—O188.25 (13)C16—C15—C14122.1 (4)
O3—Ni1—O1156.11 (10)C15—C16—C17118.7 (4)
O2—C1—O1126.6 (4)C15—C16—H16A120.7
O2—C1—C2118.6 (4)C17—C16—H16A120.7
O1—C1—C2114.9 (4)N6—C17—C16124.7 (4)
N1—C2—C3120.6 (4)N6—C17—H17A117.6
N1—C2—C1113.2 (3)C16—C17—H17A117.6
C3—C2—C1126.3 (4)N6—C18—C19124.6 (5)
C4—C3—C2118.2 (4)N6—C18—H18A117.7
C4—C3—H3A120.9C19—C18—H18A117.7
C2—C3—H3A120.9C15—C19—C18119.1 (4)
C5—C4—C3120.1 (4)C15—C19—H19A120.5
C5—C4—H4A120.0C18—C19—H19A120.5
C3—C4—H4A120.0C2—N1—C6122.2 (3)
C4—C5—C6118.8 (4)C2—N1—Ni1118.9 (3)
C4—C5—H5A120.6C6—N1—Ni1118.9 (3)
C6—C5—H5A120.6C12—N2—C8117.0 (3)
N1—C6—C5120.2 (4)C12—N2—Ni1118.9 (3)
N1—C6—C7111.7 (3)C8—N2—Ni1124.0 (3)
C5—C6—C7128.1 (4)C14—N3—C13103.5 (3)
O4—C7—O3124.5 (4)C13—N4—N5102.2 (3)
O4—C7—C6119.0 (3)C14—N5—N4110.5 (3)
O3—C7—C6116.5 (4)C14—N5—H5131 (3)
N2—C8—C9123.1 (4)N4—N5—H5118 (3)
N2—C8—H8A118.5C17—N6—C18115.5 (4)
C9—C8—H8A118.5C1—O1—Ni1115.2 (2)
C10—C9—C8119.5 (4)C7—O3—Ni1114.5 (3)
C10—C9—H9A120.3Ni1—O5—H5C125 (3)
C8—C9—H9A120.3Ni1—O5—H5B123 (3)
C11—C10—C9117.1 (4)H5C—O5—H5B111 (3)
C11—C10—C13121.2 (4)Ni1—O6—H6B121 (3)
C9—C10—C13121.7 (4)Ni1—O6—H6C112 (5)
C10—C11—C12120.0 (4)H6B—O6—H6C107 (3)
O2—C1—C2—N1−175.7 (4)O1—Ni1—N1—C21.3 (3)
O1—C1—C2—N13.1 (5)O5—Ni1—N1—C690.5 (3)
O2—C1—C2—C32.9 (6)N2—Ni1—N1—C67.3 (19)
O1—C1—C2—C3−178.3 (4)O6—Ni1—N1—C6−92.5 (3)
N1—C2—C3—C40.0 (6)O3—Ni1—N1—C6−1.3 (3)
C1—C2—C3—C4−178.5 (4)O1—Ni1—N1—C6179.4 (3)
C2—C3—C4—C5−0.2 (7)C11—C12—N2—C81.2 (7)
C3—C4—C5—C6−0.1 (7)C11—C12—N2—Ni1178.3 (3)
C4—C5—C6—N10.7 (6)C9—C8—N2—C12−0.8 (7)
C4—C5—C6—C7−179.1 (4)C9—C8—N2—Ni1−177.8 (3)
N1—C6—C7—O4−177.3 (4)N1—Ni1—N2—C124.0 (19)
C5—C6—C7—O42.5 (7)O5—Ni1—N2—C12−79.3 (3)
N1—C6—C7—O30.5 (5)O6—Ni1—N2—C12103.7 (3)
C5—C6—C7—O3−179.7 (4)O3—Ni1—N2—C1212.5 (3)
N2—C8—C9—C100.1 (7)O1—Ni1—N2—C12−167.9 (3)
C8—C9—C10—C110.2 (7)N1—Ni1—N2—C8−179 (100)
C8—C9—C10—C13−178.3 (4)O5—Ni1—N2—C897.7 (4)
C9—C10—C11—C120.1 (7)O6—Ni1—N2—C8−79.3 (4)
C13—C10—C11—C12178.6 (4)O3—Ni1—N2—C8−170.6 (3)
C10—C11—C12—N2−0.8 (7)O1—Ni1—N2—C89.0 (4)
C11—C10—C13—N4170.7 (4)N5—C14—N3—C13−0.3 (5)
C9—C10—C13—N4−10.8 (7)C15—C14—N3—C13177.4 (4)
C11—C10—C13—N3−10.5 (7)N4—C13—N3—C141.0 (5)
C9—C10—C13—N3168.0 (4)C10—C13—N3—C14−177.8 (4)
N3—C14—C15—C198.3 (7)N3—C13—N4—N5−1.3 (5)
N5—C14—C15—C19−174.3 (4)C10—C13—N4—N5177.6 (4)
N3—C14—C15—C16−171.1 (5)N3—C14—N5—N4−0.5 (5)
N5—C14—C15—C166.3 (7)C15—C14—N5—N4−178.4 (4)
C19—C15—C16—C17−1.3 (7)C13—N4—N5—C141.1 (5)
C14—C15—C16—C17178.1 (5)C16—C17—N6—C180.8 (8)
C15—C16—C17—N60.3 (9)C19—C18—N6—C17−0.9 (7)
C16—C15—C19—C181.1 (7)O2—C1—O1—Ni1176.6 (3)
C14—C15—C19—C18−178.2 (4)C2—C1—O1—Ni1−2.0 (4)
N6—C18—C19—C15−0.1 (7)N1—Ni1—O1—C10.5 (3)
C3—C2—N1—C60.6 (6)O5—Ni1—O1—C190.7 (3)
C1—C2—N1—C6179.3 (3)N2—Ni1—O1—C1179.9 (3)
C3—C2—N1—Ni1178.6 (3)O6—Ni1—O1—C1−90.2 (3)
C1—C2—N1—Ni1−2.7 (4)O3—Ni1—O1—C1−1.1 (5)
C5—C6—N1—C2−1.0 (6)O4—C7—O3—Ni1176.1 (3)
C7—C6—N1—C2178.8 (3)C6—C7—O3—Ni1−1.6 (4)
C5—C6—N1—Ni1−178.9 (3)N1—Ni1—O3—C71.6 (3)
C7—C6—N1—Ni10.9 (4)O5—Ni1—O3—C7−88.0 (3)
O5—Ni1—N1—C2−87.5 (3)N2—Ni1—O3—C7−177.7 (3)
N2—Ni1—N1—C2−170.7 (16)O6—Ni1—O3—C791.6 (3)
O6—Ni1—N1—C289.5 (3)O1—Ni1—O3—C73.2 (5)
O3—Ni1—N1—C2−179.3 (3)
D—H···AD—HH···AD···AD—H···A
N5—H5···O4i0.88 (4)1.81 (4)2.685 (5)179 (7)
O5—H5B···O1ii0.86 (4)1.87 (4)2.718 (5)168 (5)
O5—H5C···O2iii0.86 (4)1.89 (4)2.705 (5)160 (4)
O6—H6B···N6iv0.87 (4)1.93 (4)2.781 (5)167 (6)
O6—H6C···O3v0.86 (4)2.39 (4)3.246 (5)169 (8)
O6—H6C···O4v0.86 (4)2.41 (7)3.081 (5)135 (6)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N5—H5⋯O4i0.88 (4)1.81 (4)2.685 (5)179 (7)
O5—H5B⋯O1ii0.86 (4)1.87 (4)2.718 (5)168 (5)
O5—H5C⋯O2iii0.86 (4)1.89 (4)2.705 (5)160 (4)
O6—H6B⋯N6iv0.87 (4)1.93 (4)2.781 (5)167 (6)
O6—H6C⋯O3v0.86 (4)2.39 (4)3.246 (5)169 (8)
O6—H6C⋯O4v0.86 (4)2.41 (7)3.081 (5)135 (6)

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) .

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