Literature DB >> 21522804

2-[(E)-2-Hy-droxy-5-(trifluoro-meth-oxy)benzyl-idene-amino]-4-methyl-phenol.

Aslı Tosyalı Karadağ, Sehriman Atalay, Hasan Genç.   

Abstract

The title compound, C(15)H(12)F(3)NO(3), is a Schiff base which adopts the cis-quinoid form in the solid state. The dihedral angle between the least-squares planes of the benzene rings being 3.6 (1)°. The F atoms of the -CF(3) group are disordered over two sets of sites with refined occupancies of 0.61 (5) and 0.39 (5). An intra-molecular N-H⋯O hydrogen bond occurs. The crystal structure is stabilized by inter-molecular O-H⋯O hydrogen bonds.

Entities:  

Year:  2010        PMID: 21522804      PMCID: PMC3050197          DOI: 10.1107/S1600536810050579

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

Schiff base compounds can be classified by their photochromic and thermochromic characteristics, see: Calligaris et al. (1972 ▶); Cohen et al. (1964 ▶); Hadjoudis et al. (1987 ▶). For Schiff base tautomerism, see: Karabıyık et al. (2008 ▶).

Experimental

Crystal data

C15H12F3NO3 M = 311.26 Triclinic, a = 6.4730 (5) Å b = 8.4435 (6) Å c = 13.0369 (9) Å α = 82.171 (6)° β = 88.034 (6)° γ = 85.622 (6)° V = 703.62 (9) Å3 Z = 2 Mo Kα radiation μ = 0.13 mm−1 T = 293 K 0.58 × 0.27 × 0.03 mm

Data collection

Stoe IPDS 2 diffractometer Absorption correction: integration (X-RED32; Stoe & Cie, 2002 ▶) T min = 0.953, T max = 0.995 11152 measured reflections 2762 independent reflections 1328 reflections with I > 2σ(I) R int = 0.078

Refinement

R[F 2 > 2σ(F 2)] = 0.048 wR(F 2) = 0.077 S = 0.89 2762 reflections 236 parameters 3 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.10 e Å−3 Δρmin = −0.14 e Å−3 Data collection: X-AREA (Stoe & Cie, 2002 ▶); cell refinement: X-AREA; data reduction: X-RED32 (Stoe & Cie, 2002 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶) and PLATON (Spek, 2009 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810050579/zq2072sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810050579/zq2072Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C15H12F3NO3Z = 2
Mr = 311.26F(000) = 320
Triclinic, P1Dx = 1.469 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 6.4730 (5) ÅCell parameters from 7349 reflections
b = 8.4435 (6) Åθ = 1.6–27.9°
c = 13.0369 (9) ŵ = 0.13 mm1
α = 82.171 (6)°T = 293 K
β = 88.034 (6)°Prism, yellow
γ = 85.622 (6)°0.58 × 0.27 × 0.03 mm
V = 703.62 (9) Å3
Stoe IPDS 2 diffractometer2762 independent reflections
Radiation source: fine-focus sealed tube1328 reflections with I > 2σ(I)
graphiteRint = 0.078
Detector resolution: 6.67 pixels mm-1θmax = 26.0°, θmin = 1.6°
rotation method scansh = −7→7
Absorption correction: integration (X-RED32; Stoe & Cie, 2002)k = −10→10
Tmin = 0.953, Tmax = 0.995l = −16→16
11152 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.048Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.077H atoms treated by a mixture of independent and constrained refinement
S = 0.89w = 1/[σ2(Fo2) + (0.0202P)2] where P = (Fo2 + 2Fc2)/3
2762 reflections(Δ/σ)max = 0.001
236 parametersΔρmax = 0.10 e Å3
3 restraintsΔρmin = −0.14 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
C160.9623 (6)0.7727 (5)0.9480 (2)0.0728 (9)
H1A−0.054 (5)0.899 (4)0.399 (2)0.114 (12)*
H1110.303 (4)0.857 (3)0.540 (2)0.097 (10)*
C10.7674 (4)0.9053 (3)0.81076 (18)0.0484 (6)
C20.5942 (4)0.9960 (3)0.84348 (18)0.0561 (7)
H20.59801.04120.90450.067*
C30.4201 (4)1.0184 (3)0.78629 (18)0.0544 (7)
H30.30591.07920.80890.065*
C40.4088 (4)0.9514 (3)0.69342 (17)0.0462 (6)
C50.5886 (4)0.8589 (3)0.66153 (16)0.0427 (6)
C60.7678 (4)0.8403 (3)0.72199 (18)0.0486 (6)
H60.88610.78300.70050.058*
C70.3895 (4)0.7180 (3)0.42719 (17)0.0424 (6)
C80.1917 (4)0.7462 (3)0.38710 (18)0.0477 (6)
C90.1518 (4)0.6878 (3)0.29666 (19)0.0592 (7)
H90.02120.70740.26800.071*
C100.3056 (4)0.6007 (3)0.2487 (2)0.0602 (8)
H100.27600.56180.18790.072*
C110.5026 (4)0.5689 (3)0.28793 (18)0.0500 (6)
C120.5427 (4)0.6285 (3)0.37817 (17)0.0464 (6)
H120.67360.60870.40650.056*
C130.6709 (4)0.4766 (3)0.2318 (2)0.0702 (8)
H13A0.74430.55010.18380.105*
H13B0.60930.40190.19500.105*
H13C0.76570.41940.28120.105*
C140.5861 (4)0.7821 (3)0.57199 (17)0.0442 (6)
H140.70590.72530.55160.053*
F1A0.8285 (13)0.808 (3)1.0198 (5)0.120 (4)0.61 (5)
F2B0.952 (2)0.6343 (7)0.9169 (9)0.106 (3)0.61 (5)
F3A1.1534 (11)0.7647 (17)0.9796 (12)0.103 (3)0.61 (5)
F1B0.819 (2)0.769 (3)1.0204 (10)0.141 (7)0.39 (5)
F2A0.916 (4)0.6340 (8)0.9273 (14)0.110 (6)0.39 (5)
F3B1.122 (4)0.771 (3)1.007 (3)0.154 (8)0.39 (5)
N10.4201 (3)0.7886 (2)0.51702 (14)0.0433 (5)
O10.0485 (3)0.8293 (2)0.44187 (13)0.0619 (5)
O20.2431 (2)0.9701 (2)0.63948 (12)0.0576 (5)
O330.9507 (3)0.8897 (2)0.86952 (14)0.0682 (6)
U11U22U33U12U13U23
C160.093 (3)0.080 (3)0.0477 (19)0.007 (2)−0.0135 (18)−0.0181 (19)
C10.0470 (17)0.0509 (17)0.0475 (14)−0.0074 (14)−0.0058 (12)−0.0040 (13)
C20.0695 (19)0.0587 (18)0.0424 (14)−0.0121 (15)0.0007 (13)−0.0112 (13)
C30.0542 (17)0.0556 (18)0.0531 (15)0.0019 (14)0.0066 (13)−0.0113 (13)
C40.0469 (16)0.0454 (16)0.0456 (14)−0.0011 (13)−0.0006 (12)−0.0048 (12)
C50.0419 (16)0.0447 (16)0.0411 (13)−0.0005 (13)0.0000 (12)−0.0060 (12)
C60.0441 (16)0.0467 (16)0.0540 (15)−0.0001 (12)−0.0006 (12)−0.0049 (13)
C70.0465 (17)0.0377 (15)0.0430 (14)−0.0025 (13)0.0011 (12)−0.0060 (11)
C80.0465 (16)0.0452 (17)0.0508 (14)−0.0001 (13)−0.0013 (12)−0.0054 (13)
C90.0595 (19)0.0566 (18)0.0634 (17)−0.0042 (15)−0.0145 (14)−0.0108 (14)
C100.072 (2)0.0552 (19)0.0583 (16)−0.0090 (16)−0.0038 (15)−0.0207 (14)
C110.0616 (18)0.0391 (16)0.0499 (14)−0.0065 (13)0.0073 (12)−0.0089 (12)
C120.0453 (16)0.0418 (16)0.0510 (15)0.0005 (13)0.0001 (12)−0.0042 (12)
C130.080 (2)0.0564 (18)0.0773 (19)−0.0037 (16)0.0181 (16)−0.0256 (15)
C140.0404 (16)0.0428 (16)0.0470 (14)0.0040 (12)0.0026 (12)−0.0023 (12)
F1A0.153 (7)0.149 (9)0.046 (4)0.051 (4)0.002 (4)−0.007 (4)
F2B0.127 (5)0.085 (7)0.106 (5)0.031 (5)−0.024 (4)−0.030 (5)
F3A0.069 (6)0.158 (5)0.078 (5)0.007 (3)−0.048 (3)−0.003 (4)
F1B0.190 (14)0.108 (9)0.098 (10)0.030 (6)0.077 (11)0.037 (7)
F2A0.189 (14)0.045 (7)0.094 (8)−0.013 (7)−0.087 (9)0.019 (6)
F3B0.22 (2)0.165 (10)0.082 (11)−0.021 (10)−0.082 (9)−0.007 (7)
N10.0387 (13)0.0436 (14)0.0467 (12)0.0048 (10)−0.0011 (10)−0.0063 (10)
O10.0488 (11)0.0748 (14)0.0604 (11)0.0158 (10)−0.0036 (9)−0.0138 (10)
O20.0461 (11)0.0673 (13)0.0592 (10)0.0141 (9)−0.0051 (9)−0.0173 (9)
O330.0648 (14)0.0784 (14)0.0620 (12)−0.0158 (11)−0.0203 (10)−0.0008 (11)
C16—F2B1.294 (5)C7—C81.391 (3)
C16—F2A1.295 (5)C7—C121.392 (3)
C16—F1B1.302 (6)C7—N11.411 (3)
C16—F1A1.303 (5)C8—O11.362 (3)
C16—F3A1.312 (5)C8—C91.378 (3)
C16—F3B1.312 (6)C9—C101.376 (3)
C16—O331.322 (3)C9—H90.9300
C1—C61.347 (3)C10—C111.383 (3)
C1—C21.396 (3)C10—H100.9300
C1—O331.422 (3)C11—C121.381 (3)
C2—C31.360 (3)C11—C131.517 (3)
C2—H20.9300C12—H120.9300
C3—C41.411 (3)C13—H13A0.9600
C3—H30.9300C13—H13B0.9600
C4—O21.291 (3)C13—H13C0.9600
C4—C51.433 (3)C14—N11.305 (3)
C5—C61.411 (3)C14—H140.9300
C5—C141.412 (3)N1—H1110.98 (3)
C6—H60.9300O1—H1A0.99 (3)
F2B—C16—F1B101.8 (16)C8—C7—N1115.3 (2)
F2A—C16—F1A105 (2)C12—C7—N1124.3 (2)
F2A—C16—F3A110.3 (14)O1—C8—C9124.3 (2)
F1A—C16—F3A111.9 (7)O1—C8—C7116.8 (2)
F2B—C16—F3B110.6 (14)C9—C8—C7118.9 (2)
F1B—C16—F3B97.7 (19)C10—C9—C8119.9 (2)
F2B—C16—O33111.3 (5)C10—C9—H9120.1
F2A—C16—O33115.5 (7)C8—C9—H9120.1
F1B—C16—O33119.0 (11)C9—C10—C11122.3 (2)
F1A—C16—O33108.7 (9)C9—C10—H10118.8
F3A—C16—O33105.6 (7)C11—C10—H10118.8
F3B—C16—O33115.1 (14)C12—C11—C10117.7 (2)
C6—C1—C2121.3 (2)C12—C11—C13121.1 (2)
C6—C1—O33119.5 (2)C10—C11—C13121.2 (2)
C2—C1—O33119.0 (2)C11—C12—C7120.7 (2)
C3—C2—C1120.1 (2)C11—C12—H12119.6
C3—C2—H2119.9C7—C12—H12119.6
C1—C2—H2119.9C11—C13—H13A109.5
C2—C3—C4121.4 (2)C11—C13—H13B109.5
C2—C3—H3119.3H13A—C13—H13B109.5
C4—C3—H3119.3C11—C13—H13C109.5
O2—C4—C3121.8 (2)H13A—C13—H13C109.5
O2—C4—C5120.8 (2)H13B—C13—H13C109.5
C3—C4—C5117.3 (2)N1—C14—C5121.7 (2)
C6—C5—C14119.7 (2)N1—C14—H14119.1
C6—C5—C4119.7 (2)C5—C14—H14119.1
C14—C5—C4120.6 (2)C14—N1—C7129.2 (2)
C1—C6—C5120.1 (2)C14—N1—H111114.7 (17)
C1—C6—H6120.0C7—N1—H111116.0 (17)
C5—C6—H6120.0C8—O1—H1A114.9 (17)
C8—C7—C12120.4 (2)C16—O33—C1116.4 (2)
C6—C1—C2—C30.9 (4)C9—C10—C11—C12−0.3 (4)
O33—C1—C2—C3177.2 (2)C9—C10—C11—C13−178.2 (3)
C1—C2—C3—C40.1 (4)C10—C11—C12—C7−0.3 (3)
C2—C3—C4—O2179.0 (3)C13—C11—C12—C7177.7 (3)
C2—C3—C4—C5−0.1 (4)C8—C7—C12—C111.3 (4)
O2—C4—C5—C6−180.0 (2)N1—C7—C12—C11−177.3 (2)
C3—C4—C5—C6−0.9 (3)C6—C5—C14—N1176.1 (2)
O2—C4—C5—C14−1.9 (4)C4—C5—C14—N1−1.9 (3)
C3—C4—C5—C14177.2 (2)C5—C14—N1—C7−179.0 (2)
C2—C1—C6—C5−2.0 (4)C8—C7—N1—C14179.2 (3)
O33—C1—C6—C5−178.2 (2)C12—C7—N1—C14−2.1 (4)
C14—C5—C6—C1−176.1 (2)F2B—C16—O33—C160.1 (7)
C4—C5—C6—C11.9 (4)F2A—C16—O33—C148.0 (16)
C12—C7—C8—O1177.5 (2)F1B—C16—O33—C1−57.8 (14)
N1—C7—C8—O1−3.8 (3)F1A—C16—O33—C1−69.6 (9)
C12—C7—C8—C9−1.8 (4)F3A—C16—O33—C1170.2 (7)
N1—C7—C8—C9176.9 (2)F3B—C16—O33—C1−173.1 (19)
O1—C8—C9—C10−177.9 (3)C6—C1—O33—C16−97.4 (3)
C7—C8—C9—C101.3 (4)C2—C1—O33—C1686.3 (3)
C8—C9—C10—C11−0.2 (4)
D—H···AD—HH···AD···AD—H···A
N1—H111···O10.99 (3)2.16 (3)2.610 (3)106 (2)
N1—H111···O20.99 (3)1.72 (3)2.546 (2)138 (2)
O1—H1A···O2i0.99 (3)1.63 (3)2.591 (2)164 (3)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H111⋯O20.99 (3)1.72 (3)2.546 (2)138 (2)
O1—H1A⋯O2i0.99 (3)1.63 (3)2.591 (2)164 (3)

Symmetry code: (i) .

  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  2 in total
  5 in total

1.  2-(1H-Benzimidazol-2-yl)-4-nitro-phenol.

Authors:  Jingya Sun; Xiangdi Tong
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-01-15

2.  2-Eth-oxy-6-[(3-methyl-pyridin-2-yl)-imino-meth-yl]phenol.

Authors:  Xiao-Ling Yuan
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-04-07

3.  Crystal structure and Hirshfeld surface analysis of (Z)-6-[(2-hy-droxy-4-methyl-anilino)-methyl-idene]-4-methyl-cyclo-hexa-2,4-dien-1-one.

Authors:  Sevgi Kansiz; Alev Sema Aydin; Necmi Dege; Erbil Agar; Igor O Fritsky
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2019-05-14

4.  4-Dimethyl-amino-N'-(2-hy-droxy-4-meth-oxy-benzyl-idene)benzohydrazide methanol monosolvate.

Authors:  Jingya Sun
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-09-26

5.  N'-(3,5-Dichloro-2-hy-droxy-benzyl-idene)-4-(dimethyl-amino)-benzohydrazide methanol monosolvate.

Authors:  Huanzhi Xu; Jingya Sun
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-03-10
  5 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.