Literature DB >> 21522794

4,4-Dimethyl-3,4-dihydro-pyrido[2',3':3,4]pyrazolo-[1,5-a][1,3,5]triazin-2-amine ethanol monosolvate.

Anton V Dolzhenko, Geok Kheng Tan, Anna V Dolzhenko, Lip Lin Koh, Wai Keung Chui.   

Abstract

In the title compound, C(10)H(12)N(6C(2)H(5)OH, the planarity of the heterocyclic system is slightly distorted at the triazine ring (r.m.s. deviation = 0.1191 Å), which adopts a conformation best described as inter-mediate between a flattened twisted boat and a half-boat with the tertiary Csp(3) atom at the bow. In the crystal, mol-ecules form centrosymmetric dimers connected by N⋯H-O and O⋯H-N hydrogen bonds between the amino group H atom, the ethanol solvent mol-ecule and the triazine N atom, making an R(4) (4)(12) graph-set motif. The other H atom of the amino group and the H atom on the endocyclic N atom form N⋯H-N hydrogen bonds with the N atoms of the pyrazole and pyridine rings, respectively, linking the mol-ecules into C(7)C(7) chains with the R(2) (2)(8) binary graph-set motif running along [010].

Entities:  

Year:  2010        PMID: 21522794      PMCID: PMC3050164          DOI: 10.1107/S160053681005097X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For a review on the synthesis and biological activity of pyrazolo­[1,5-a]triazines, see: Dolzhenko et al. (2008 ▶). For the synthesis, crystal structure studies and biological activity of related fused gem-dimethyl-substituted amino-1,3,5-triazines, see: Dolzhenko et al. (2007a ▶,b ▶, 2009 ▶), Toyoda et al. (1997 ▶). For graph-set analysis of hydrogen bonding, see: Bernstein et al. (1995 ▶). For a related structure, see: Sachdeva et al. (2010 ▶).

Experimental

Crystal data

C10H12N6·C2H6O M = 262.32 Monoclinic, a = 12.1250 (19) Å b = 13.913 (2) Å c = 16.598 (3) Å β = 101.683 (4)° V = 2742.0 (7) Å3 Z = 8 Mo Kα radiation μ = 0.09 mm−1 T = 100 K 0.60 × 0.38 × 0.10 mm

Data collection

Bruker SMART APEX CCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 2001 ▶) T min = 0.950, T max = 0.991 9471 measured reflections 3129 independent reflections 2657 reflections with I > 2σ(I) R int = 0.030

Refinement

R[F 2 > 2σ(F 2)] = 0.050 wR(F 2) = 0.133 S = 1.06 3129 reflections 209 parameters 38 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.37 e Å−3 Δρmin = −0.21 e Å−3 Data collection: SMART (Bruker, 2001 ▶); cell refinement: SAINT (Bruker, 2001 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S160053681005097X/hg2760sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S160053681005097X/hg2760Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C10H12N6·C2H6OF(000) = 1120
Mr = 262.32Dx = 1.271 Mg m3
Monoclinic, C2/cMelting point: 559 K
Hall symbol: -C 2ycMo Kα radiation, λ = 0.71073 Å
a = 12.1250 (19) ÅCell parameters from 782 reflections
b = 13.913 (2) Åθ = 2.7–27.3°
c = 16.598 (3) ŵ = 0.09 mm1
β = 101.683 (4)°T = 100 K
V = 2742.0 (7) Å3Plate, yellow
Z = 80.60 × 0.38 × 0.10 mm
Bruker SMART APEX CCD diffractometer3129 independent reflections
Radiation source: fine-focus sealed tube2657 reflections with I > 2σ(I)
graphiteRint = 0.030
φ and ω scansθmax = 27.5°, θmin = 2.3°
Absorption correction: multi-scan (SADABS; Sheldrick, 2001)h = −15→14
Tmin = 0.950, Tmax = 0.991k = −18→17
9471 measured reflectionsl = −18→21
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.050Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.133H atoms treated by a mixture of independent and constrained refinement
S = 1.06w = 1/[σ2(Fo2) + (0.0709P)2 + 1.8445P] where P = (Fo2 + 2Fc2)/3
3129 reflections(Δ/σ)max = 0.001
209 parametersΔρmax = 0.37 e Å3
38 restraintsΔρmin = −0.21 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
O1S0.49619 (10)0.11324 (8)0.46397 (7)0.0285 (3)
H1S0.5246 (18)0.1117 (15)0.5165 (14)0.039 (6)*
C1S0.5838 (2)0.0860 (2)0.42339 (15)0.0384 (7)0.781 (6)
H1SA0.55260.07690.36400.046*0.781 (6)
H1SB0.61690.02430.44610.046*0.781 (6)
C2S0.6736 (3)0.1618 (3)0.4346 (2)0.0648 (11)0.781 (6)
H2SA0.73350.14200.40630.097*0.781 (6)
H2SB0.70510.17010.49340.097*0.781 (6)
H2SC0.64100.22260.41140.097*0.781 (6)
C1SA0.5898 (9)0.1503 (9)0.4290 (6)0.044 (2)0.219 (6)
H1SC0.56510.15720.36870.053*0.219 (6)
H1SD0.61200.21460.45230.053*0.219 (6)
C2SA0.6822 (14)0.0883 (12)0.4464 (9)0.077 (4)0.219 (6)
H2SD0.74370.11420.42270.116*0.219 (6)
H2SE0.66050.02500.42260.116*0.219 (6)
H2SF0.70720.08230.50620.116*0.219 (6)
N10.56023 (10)0.47488 (8)0.67409 (7)0.0203 (3)
N20.67666 (10)0.34962 (9)0.74160 (7)0.0205 (3)
N30.68205 (10)0.25362 (8)0.72312 (7)0.0187 (3)
N40.59745 (10)0.13025 (8)0.63025 (7)0.0208 (3)
N50.77009 (11)0.10579 (9)0.72296 (8)0.0220 (3)
H50.8212 (17)0.0662 (15)0.7465 (12)0.034 (5)*
N60.68817 (13)−0.01616 (10)0.63779 (9)0.0302 (3)
H6A0.6334 (17)−0.0354 (14)0.6007 (12)0.028 (5)*
H6B0.7326 (17)−0.0588 (15)0.6701 (12)0.037 (5)*
C10.47528 (13)0.49206 (10)0.61227 (9)0.0226 (3)
H10.44790.55620.60590.027*
C20.42132 (13)0.42321 (11)0.55453 (9)0.0235 (3)
H20.36040.44200.51190.028*
C30.45708 (12)0.32946 (11)0.56021 (9)0.0211 (3)
H30.42420.28240.52120.025*
C40.54476 (12)0.30661 (10)0.62667 (8)0.0182 (3)
C50.59298 (12)0.38088 (10)0.68156 (8)0.0180 (3)
C60.60627 (12)0.22357 (10)0.65668 (8)0.0189 (3)
C70.68259 (13)0.07377 (11)0.66450 (9)0.0220 (3)
C80.75702 (12)0.18664 (10)0.77658 (8)0.0210 (3)
C90.70180 (17)0.15481 (14)0.84683 (10)0.0384 (4)
H9A0.69530.21000.88230.058*
H9B0.74800.10490.87910.058*
H9C0.62660.12910.82430.058*
C100.87144 (15)0.23234 (12)0.80702 (12)0.0363 (4)
H10A0.89830.26060.76040.055*
H10B0.92490.18320.83320.055*
H10C0.86510.28270.84710.055*
U11U22U33U12U13U23
O1S0.0298 (6)0.0327 (6)0.0198 (6)0.0020 (5)−0.0023 (5)−0.0027 (4)
C1S0.0441 (15)0.0418 (17)0.0304 (12)0.0038 (12)0.0104 (10)−0.0026 (11)
C2S0.050 (2)0.101 (3)0.0473 (17)−0.0189 (19)0.0193 (14)0.0019 (18)
C1SA0.044 (5)0.049 (6)0.040 (4)−0.019 (4)0.008 (4)0.007 (4)
C2SA0.089 (8)0.077 (8)0.069 (7)0.018 (6)0.021 (6)0.022 (6)
N10.0230 (6)0.0168 (6)0.0203 (6)−0.0004 (5)0.0025 (5)0.0008 (5)
N20.0230 (6)0.0159 (6)0.0205 (6)0.0006 (5)−0.0001 (5)−0.0021 (5)
N30.0195 (6)0.0158 (6)0.0184 (6)0.0010 (4)−0.0016 (5)−0.0014 (4)
N40.0233 (6)0.0164 (6)0.0192 (6)0.0016 (5)−0.0042 (5)−0.0017 (4)
N50.0227 (6)0.0180 (6)0.0217 (6)0.0050 (5)−0.0042 (5)−0.0022 (5)
N60.0356 (8)0.0196 (7)0.0273 (7)0.0063 (6)−0.0128 (6)−0.0040 (5)
C10.0255 (8)0.0178 (7)0.0235 (7)0.0024 (6)0.0027 (6)0.0018 (6)
C20.0234 (7)0.0232 (7)0.0209 (7)0.0015 (6)−0.0028 (6)0.0024 (6)
C30.0223 (7)0.0213 (7)0.0177 (7)−0.0012 (5)−0.0002 (5)−0.0009 (5)
C40.0190 (7)0.0170 (7)0.0183 (7)−0.0008 (5)0.0029 (5)−0.0004 (5)
C50.0173 (6)0.0190 (7)0.0177 (6)−0.0011 (5)0.0033 (5)0.0001 (5)
C60.0185 (7)0.0209 (7)0.0158 (6)−0.0005 (5)0.0003 (5)0.0001 (5)
C70.0254 (7)0.0201 (7)0.0182 (7)0.0013 (6)−0.0011 (6)−0.0004 (5)
C80.0226 (7)0.0194 (7)0.0179 (7)0.0046 (5)−0.0031 (6)−0.0015 (5)
C90.0475 (11)0.0425 (10)0.0257 (8)0.0202 (8)0.0088 (8)0.0115 (7)
C100.0286 (9)0.0244 (8)0.0466 (10)0.0042 (7)−0.0146 (8)−0.0081 (7)
O1S—C1S1.420 (3)N5—C71.3596 (18)
O1S—C1SA1.469 (9)N5—C81.4628 (19)
O1S—H1S0.87 (2)N5—H50.86 (2)
C1S—C2S1.500 (5)N6—C71.334 (2)
C1S—H1SA0.9900N6—H6A0.85 (2)
C1S—H1SB0.9900N6—H6B0.90 (2)
C2S—H2SA0.9800C1—C21.418 (2)
C2S—H2SB0.9800C1—H10.9500
C2S—H2SC0.9800C2—C31.372 (2)
C1SA—C2SA1.40 (2)C2—H20.9500
C1SA—H1SC0.9900C3—C41.4047 (19)
C1SA—H1SD0.9900C3—H30.9500
C2SA—H2SD0.9800C4—C61.410 (2)
C2SA—H2SE0.9800C4—C51.4227 (19)
C2SA—H2SF0.9800C8—C101.517 (2)
N1—C11.3202 (19)C8—C91.523 (2)
N1—C51.3651 (18)C9—H9A0.9800
N2—C51.3425 (18)C9—H9B0.9800
N2—N31.3749 (17)C9—H9C0.9800
N3—C61.3508 (17)C10—H10A0.9800
N3—C81.4682 (18)C10—H10B0.9800
N4—C71.3299 (19)C10—H10C0.9800
N4—C61.3678 (18)
C1S—O1S—C1SA36.3 (5)N1—C1—C2125.71 (14)
C1S—O1S—H1S106.7 (14)N1—C1—H1117.1
C1SA—O1S—H1S102.9 (14)C2—C1—H1117.1
O1S—C1S—C2S110.4 (3)C3—C2—C1119.98 (13)
O1S—C1S—H1SA109.6C3—C2—H2120.0
C2S—C1S—H1SA109.6C1—C2—H2120.0
O1S—C1S—H1SB109.6C2—C3—C4116.60 (13)
C2S—C1S—H1SB109.6C2—C3—H3121.7
H1SA—C1S—H1SB108.1C4—C3—H3121.7
C1S—C2S—H2SA109.5C3—C4—C6136.46 (13)
C1S—C2S—H2SB109.5C3—C4—C5119.08 (13)
H2SA—C2S—H2SB109.5C6—C4—C5104.45 (12)
C1S—C2S—H2SC109.5N2—C5—N1122.69 (12)
H2SA—C2S—H2SC109.5N2—C5—C4113.00 (12)
H2SB—C2S—H2SC109.5N1—C5—C4124.30 (13)
C2SA—C1SA—O1S110.6 (11)N3—C6—N4123.49 (12)
C2SA—C1SA—H1SC109.5N3—C6—C4104.98 (12)
O1S—C1SA—H1SC109.5N4—C6—C4131.53 (13)
C2SA—C1SA—H1SD109.5N4—C7—N6119.96 (13)
O1S—C1SA—H1SD109.5N4—C7—N5122.51 (14)
H1SC—C1SA—H1SD108.1N6—C7—N5117.38 (13)
C1SA—C2SA—H2SD109.5N5—C8—N3104.50 (11)
C1SA—C2SA—H2SE109.5N5—C8—C10108.70 (13)
H2SD—C2SA—H2SE109.5N3—C8—C10110.36 (13)
C1SA—C2SA—H2SF109.5N5—C8—C9111.15 (13)
H2SD—C2SA—H2SF109.5N3—C8—C9109.45 (12)
H2SE—C2SA—H2SF109.5C10—C8—C9112.40 (14)
C1—N1—C5114.26 (12)C8—C9—H9A109.5
C5—N2—N3102.25 (11)C8—C9—H9B109.5
C6—N3—N2115.31 (11)H9A—C9—H9B109.5
C6—N3—C8122.17 (12)C8—C9—H9C109.5
N2—N3—C8122.23 (11)H9A—C9—H9C109.5
C7—N4—C6114.85 (12)H9B—C9—H9C109.5
C7—N5—C8121.41 (12)C8—C10—H10A109.5
C7—N5—H5120.0 (13)C8—C10—H10B109.5
C8—N5—H5111.9 (13)H10A—C10—H10B109.5
C7—N6—H6A116.8 (13)C8—C10—H10C109.5
C7—N6—H6B118.9 (13)H10A—C10—H10C109.5
H6A—N6—H6B120.5 (18)H10B—C10—H10C109.5
C1SA—O1S—C1S—C2S21.3 (7)C8—N3—C6—C4174.81 (13)
C1S—O1S—C1SA—C2SA−39.4 (9)C7—N4—C6—N3−12.5 (2)
C5—N2—N3—C6−1.02 (16)C7—N4—C6—C4168.49 (15)
C5—N2—N3—C8−175.06 (13)C3—C4—C6—N3178.26 (17)
C5—N1—C1—C2−2.2 (2)C5—C4—C6—N3−0.17 (15)
N1—C1—C2—C3−0.2 (2)C3—C4—C6—N4−2.6 (3)
C1—C2—C3—C42.3 (2)C5—C4—C6—N4178.95 (15)
C2—C3—C4—C6179.72 (16)C6—N4—C7—N6−173.68 (14)
C2—C3—C4—C5−2.0 (2)C6—N4—C7—N51.7 (2)
N3—N2—C5—N1−177.97 (13)C8—N5—C7—N426.4 (2)
N3—N2—C5—C40.87 (16)C8—N5—C7—N6−158.08 (14)
C1—N1—C5—N2−178.85 (14)C7—N5—C8—N3−37.89 (18)
C1—N1—C5—C42.4 (2)C7—N5—C8—C10−155.73 (14)
C3—C4—C5—N2−179.23 (13)C7—N5—C8—C980.06 (17)
C6—C4—C5—N2−0.46 (17)C6—N3—C8—N527.26 (18)
C3—C4—C5—N1−0.4 (2)N2—N3—C8—N5−159.11 (12)
C6—C4—C5—N1178.35 (13)C6—N3—C8—C10143.94 (14)
N2—N3—C6—N4−178.45 (13)N2—N3—C8—C10−42.42 (19)
C8—N3—C6—N4−4.4 (2)C6—N3—C8—C9−91.86 (17)
N2—N3—C6—C40.77 (17)N2—N3—C8—C981.78 (17)
D—H···AD—HH···AD···AD—H···A
N5—H5···N1i0.86 (2)2.16 (2)3.0077 (18)169.5 (18)
N6—H6B···N2i0.90 (2)2.08 (2)2.9754 (18)171.5 (18)
N6—H6A···O1Sii0.85 (2)2.03 (2)2.8540 (18)163.2 (18)
O1S—H1S···N40.87 (2)1.93 (2)2.7943 (17)170 (2)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N5—H5⋯N1i0.86 (2)2.16 (2)3.0077 (18)169.5 (18)
N6—H6B⋯N2i0.90 (2)2.08 (2)2.9754 (18)171.5 (18)
N6—H6A⋯O1Sii0.85 (2)2.03 (2)2.8540 (18)163.2 (18)
O1S—H1S⋯N40.87 (2)1.93 (2)2.7943 (17)170 (2)

Symmetry codes: (i) ; (ii) .

  3 in total

1.  Lead discovery of inhibitors of the dihydrofolate reductase domain of Plasmodium falciparum dihydrofolate reductase-thymidylate synthase.

Authors:  T Toyoda; R K Brobey; G Sano; T Horii; N Tomioka; A Itai
Journal:  Biochem Biophys Res Commun       Date:  1997-06-27       Impact factor: 3.575

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  4-Amino-2,8-dimethyl-6H-pyrimido[1,2-a][1,3,5]triazin-6-one.

Authors:  Nikhil Sachdeva; Anton V Dolzhenko; Geok Kheng Tan; Lip Lin Koh; Wai Keung Chui
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-07-17
  3 in total

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