Literature DB >> 21522762

(E)-1,1'-Dibutyl-3,3'-biindolinyl-idene-2,2'-dione.

Mao-Sen Yuan, Qi Fang.   

Abstract

In the title mol-ecule, C(24)H(26)N(2)O(2), the two indol-2-one units, which are connected by a C=C double bond, are almost coplanar with an inter-planar angle of 6.8 (1)°. On cooling from 293 to 120 K, the space group changes from P2(1)/n to P2(1). Two intra-molecular C-H⋯O hydrogen bonds occur.

Entities:  

Year:  2010        PMID: 21522762      PMCID: PMC3050316          DOI: 10.1107/S160053681005066X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For uses of isoindigo derivatives as medicines, see: Sassatelli et al. (2004 ▶). For the room temperature (293 K) structure, see: Yuan et al. (2007 ▶).

Experimental

Crystal data

C24H26N2O2 M = 374.47 Monoclinic, a = 8.9224 (3) Å b = 11.9605 (5) Å c = 9.6827 (4) Å β = 110.782 (1)° V = 966.07 (7) Å3 Z = 2 Mo Kα radiation μ = 0.08 mm−1 T = 120 K 0.20 × 0.11 × 0.09 mm

Data collection

Bruker SMART 6K CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2006 ▶) T min = 0.984, T max = 0.993 13014 measured reflections 2926 independent reflections 2477 reflections with I > 2σ(I) R int = 0.041

Refinement

R[F 2 > 2σ(F 2)] = 0.044 wR(F 2) = 0.121 S = 1.04 2926 reflections 257 parameters 1 restraint H-atom parameters constrained Δρmax = 0.38 e Å−3 Δρmin = −0.22 e Å−3 Data collection: SMART (Bruker, 2001 ▶); cell refinement: SAINT (Bruker, 2001 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S160053681005066X/jh2237sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S160053681005066X/jh2237Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C24H26N2O2F(000) = 400
Mr = 374.47Dx = 1.287 Mg m3
Monoclinic, P21Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ybCell parameters from 3669 reflections
a = 8.9224 (3) Åθ = 2.7–30.0°
b = 11.9605 (5) ŵ = 0.08 mm1
c = 9.6827 (4) ÅT = 120 K
β = 110.782 (1)°Plank, purple
V = 966.07 (7) Å30.20 × 0.11 × 0.09 mm
Z = 2
Bruker SMART 6K CCD area-detector diffractometer2926 independent reflections
Radiation source: fine-focus sealed tube2477 reflections with I > 2σ(I)
graphiteRint = 0.041
Detector resolution: ω pixels mm-1θmax = 30.0°, θmin = 2.3°
φ and ω scansh = −12→12
Absorption correction: multi-scan (SADABS; Bruker, 2006)k = −16→16
Tmin = 0.984, Tmax = 0.993l = −13→13
13014 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.044Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.121H-atom parameters constrained
S = 1.04w = 1/[σ2(Fo2) + (0.0708P)2 + 0.1553P] where P = (Fo2 + 2Fc2)/3
2926 reflections(Δ/σ)max = 0.003
257 parametersΔρmax = 0.38 e Å3
1 restraintΔρmin = −0.22 e Å3
Experimental. The data collection nominally covered full sphere of reciprocal space, by a combination of 3 runs of narrow-frame ω-scans (scan width 0.3° ω, 20 s exposure), every run at a different φ angle. Crystal to detector distance 4.83 cm.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes)are estimated using the full covariance matrix. The cell e.s.d.'s are takeninto account individually in the estimation of e.s.d.'s in distances, anglesand torsion angles; correlations between e.s.d.'s in cell parameters are onlyused when they are defined by crystal symmetry. An approximate (isotropic)treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. Methyl groups were refined as rigid bodies rotating around C—C bonds, with a common refined U for three H atoms. Other H atoms: riding model.
xyzUiso*/Ueq
O10.5183 (2)0.40482 (16)0.3409 (2)0.0316 (4)
O20.9572 (2)0.57182 (16)0.1333 (2)0.0298 (4)
N10.7459 (2)0.30308 (16)0.4455 (2)0.0223 (4)
N20.7454 (2)0.69090 (16)0.0617 (2)0.0212 (4)
C10.6589 (3)0.3867 (2)0.3584 (2)0.0219 (4)
C20.7669 (2)0.44723 (18)0.2919 (2)0.0192 (4)
C30.9220 (2)0.38775 (19)0.3518 (2)0.0195 (4)
C41.0726 (3)0.3982 (2)0.3403 (3)0.0227 (4)
H41.09120.45480.27950.027*
C51.1959 (3)0.3257 (2)0.4182 (3)0.0266 (5)
H51.29850.33380.41030.032*
C61.1715 (3)0.2420 (2)0.5069 (3)0.0265 (5)
H6A1.25700.19320.55870.032*
C71.0227 (3)0.2291 (2)0.5203 (3)0.0257 (5)
H71.00490.17190.58090.031*
C80.9016 (3)0.30130 (19)0.4437 (2)0.0210 (4)
C90.6854 (3)0.2281 (2)0.5331 (2)0.0259 (5)
H9A0.59090.26310.54660.031*
H9B0.76900.21880.63210.031*
C100.6377 (3)0.1131 (2)0.4634 (3)0.0289 (5)
H10A0.72910.08100.44140.035*
H10B0.61570.06330.53560.035*
C110.4915 (3)0.1152 (2)0.3223 (3)0.0330 (5)
H11A0.40000.14720.34400.040*
H11B0.51350.16460.24960.040*
C120.4457 (4)0.0003 (2)0.2548 (3)0.0424 (7)
H12A0.35450.00680.16170.049 (6)*
H12B0.4161−0.04740.32330.049 (6)*
H12C0.5370−0.03280.23580.049 (6)*
C210.8248 (2)0.59781 (19)0.1318 (2)0.0205 (4)
C220.7168 (2)0.53754 (18)0.1994 (2)0.0193 (4)
C230.5658 (2)0.60189 (19)0.1468 (2)0.0186 (4)
C240.4134 (2)0.5911 (2)0.1555 (2)0.0230 (4)
H240.39070.52960.20700.028*
C250.2947 (3)0.6699 (2)0.0894 (3)0.0243 (5)
H250.19080.66050.09400.029*
C260.3261 (3)0.7618 (2)0.0169 (2)0.0253 (5)
H260.24450.8158−0.02540.030*
C270.4764 (3)0.7760 (2)0.0054 (3)0.0245 (5)
H270.49930.8391−0.04320.029*
C280.5909 (2)0.69476 (18)0.0674 (2)0.0199 (4)
C290.8118 (3)0.7658 (2)−0.0215 (2)0.0240 (4)
H29A0.72290.8062−0.09640.029*
H29B0.86760.7207−0.07420.029*
C300.9289 (3)0.8506 (2)0.0767 (3)0.0287 (5)
H30A1.01970.80980.14870.034*
H30B0.97240.89660.01460.034*
C310.8570 (3)0.9279 (2)0.1606 (3)0.0321 (5)
H31A0.81930.88310.22790.039*
H31B0.76310.96670.08980.039*
C320.9782 (4)1.0145 (3)0.2504 (3)0.0479 (8)
H32A1.02201.05510.18530.054 (6)*
H32B0.92491.06740.29530.054 (6)*
H32C1.06540.97690.32830.054 (6)*
U11U22U33U12U13U23
O10.0265 (8)0.0276 (9)0.0468 (11)0.0064 (7)0.0204 (8)0.0120 (8)
O20.0262 (8)0.0267 (9)0.0415 (9)0.0058 (7)0.0183 (7)0.0102 (7)
N10.0218 (8)0.0200 (9)0.0262 (9)−0.0022 (7)0.0100 (7)0.0037 (7)
N20.0202 (8)0.0200 (9)0.0245 (9)0.0009 (7)0.0093 (7)0.0034 (7)
C10.0236 (10)0.0197 (10)0.0245 (10)−0.0014 (9)0.0112 (8)−0.0011 (8)
C20.0201 (9)0.0160 (9)0.0226 (10)−0.0010 (8)0.0091 (7)−0.0018 (7)
C30.0207 (9)0.0173 (10)0.0195 (9)−0.0012 (8)0.0060 (7)−0.0011 (8)
C40.0226 (9)0.0181 (10)0.0269 (10)0.0000 (9)0.0083 (8)0.0018 (8)
C50.0216 (10)0.0267 (12)0.0308 (12)−0.0002 (9)0.0084 (9)0.0022 (10)
C60.0222 (10)0.0251 (11)0.0284 (11)0.0016 (9)0.0042 (8)0.0046 (9)
C70.0252 (11)0.0226 (11)0.0263 (11)−0.0017 (9)0.0054 (9)0.0036 (9)
C80.0212 (9)0.0190 (10)0.0223 (10)−0.0014 (8)0.0071 (7)−0.0003 (8)
C90.0282 (11)0.0263 (11)0.0243 (10)−0.0022 (10)0.0107 (9)0.0059 (9)
C100.0314 (11)0.0224 (11)0.0345 (12)0.0002 (10)0.0138 (9)0.0070 (9)
C110.0379 (13)0.0232 (11)0.0337 (12)−0.0016 (10)0.0077 (10)0.0016 (10)
C120.0505 (17)0.0257 (13)0.0462 (16)−0.0037 (12)0.0113 (13)−0.0035 (11)
C210.0221 (9)0.0174 (10)0.0228 (10)−0.0009 (8)0.0091 (8)0.0011 (8)
C220.0207 (9)0.0164 (9)0.0215 (10)−0.0019 (8)0.0083 (7)−0.0020 (7)
C230.0180 (8)0.0163 (9)0.0200 (9)0.0012 (8)0.0051 (7)−0.0016 (7)
C240.0214 (10)0.0237 (11)0.0251 (10)−0.0021 (9)0.0097 (8)0.0000 (8)
C250.0208 (10)0.0249 (12)0.0276 (11)−0.0008 (9)0.0091 (8)−0.0003 (9)
C260.0232 (10)0.0257 (11)0.0261 (10)0.0054 (9)0.0076 (8)0.0030 (9)
C270.0232 (10)0.0225 (11)0.0274 (10)0.0025 (9)0.0083 (8)0.0047 (9)
C280.0198 (9)0.0191 (10)0.0205 (9)−0.0008 (8)0.0067 (7)−0.0017 (8)
C290.0255 (10)0.0215 (10)0.0269 (11)−0.0010 (9)0.0117 (9)0.0048 (9)
C300.0281 (11)0.0249 (11)0.0347 (12)−0.0038 (9)0.0129 (9)0.0052 (9)
C310.0365 (12)0.0227 (11)0.0361 (13)−0.0028 (10)0.0114 (10)0.0009 (9)
C320.064 (2)0.0330 (15)0.0429 (16)−0.0158 (15)0.0146 (14)−0.0077 (12)
O1—C11.224 (3)C11—H11B0.9900
O2—C211.217 (3)C12—H12A0.9801
N1—C11.360 (3)C12—H12B0.9801
N1—C81.396 (3)C12—H12C0.9801
N1—C91.463 (3)C21—C221.524 (3)
N2—C211.364 (3)C22—C231.477 (3)
N2—C281.399 (3)C23—C241.398 (3)
N2—C291.464 (3)C23—C281.413 (3)
C1—C21.519 (3)C24—C251.392 (3)
C2—C221.373 (3)C24—H240.9500
C2—C31.479 (3)C25—C261.386 (3)
C3—C41.393 (3)C25—H250.9500
C3—C81.417 (3)C26—C271.394 (3)
C4—C51.394 (3)C26—H260.9500
C4—H40.9500C27—C281.383 (3)
C5—C61.386 (3)C27—H270.9500
C5—H50.9500C29—C301.523 (3)
C6—C71.388 (3)C29—H29A0.9900
C6—H6A0.9500C29—H29B0.9900
C7—C81.376 (3)C30—C311.514 (4)
C7—H70.9500C30—H30A0.9900
C9—C101.525 (3)C30—H30B0.9900
C9—H9A0.9900C31—C321.528 (4)
C9—H9B0.9900C31—H31A0.9900
C10—C111.518 (3)C31—H31B0.9900
C10—H10A0.9900C32—H32A0.9802
C10—H10B0.9900C32—H32B0.9802
C11—C121.513 (4)C32—H32C0.9802
C11—H11A0.9900
C1—N1—C8110.82 (18)C11—C12—H12C109.4
C1—N1—C9124.27 (18)H12A—C12—H12C109.5
C8—N1—C9124.88 (19)H12B—C12—H12C109.5
C21—N2—C28110.65 (17)O2—C21—N2123.0 (2)
C21—N2—C29122.21 (18)O2—C21—C22129.3 (2)
C28—N2—C29126.74 (18)N2—C21—C22107.66 (17)
O1—C1—N1123.2 (2)C2—C22—C23132.94 (19)
O1—C1—C2129.1 (2)C2—C22—C21122.89 (18)
N1—C1—C2107.73 (17)C23—C22—C21104.12 (18)
C22—C2—C3132.62 (18)C24—C23—C28116.8 (2)
C22—C2—C1122.87 (17)C24—C23—C22136.0 (2)
C3—C2—C1104.50 (18)C28—C23—C22107.22 (18)
C4—C3—C8117.3 (2)C25—C24—C23120.5 (2)
C4—C3—C2136.1 (2)C25—C24—H24119.7
C8—C3—C2106.67 (18)C23—C24—H24119.7
C3—C4—C5120.0 (2)C26—C25—C24120.8 (2)
C3—C4—H4120.0C26—C25—H25119.6
C5—C4—H4120.0C24—C25—H25119.6
C6—C5—C4121.2 (2)C25—C26—C27120.7 (2)
C6—C5—H5119.4C25—C26—H26119.7
C4—C5—H5119.4C27—C26—H26119.7
C5—C6—C7120.3 (2)C28—C27—C26117.6 (2)
C5—C6—H6A119.9C28—C27—H27121.2
C7—C6—H6A119.9C26—C27—H27121.2
C8—C7—C6118.3 (2)C27—C28—N2126.3 (2)
C8—C7—H7120.9C27—C28—C23123.57 (19)
C6—C7—H7120.9N2—C28—C23110.10 (18)
C7—C8—N1126.7 (2)N2—C29—C30112.71 (18)
C7—C8—C3123.1 (2)N2—C29—H29A109.0
N1—C8—C3110.28 (19)C30—C29—H29A109.0
N1—C9—C10113.50 (19)N2—C29—H29B109.0
N1—C9—H9A108.9C30—C29—H29B109.0
C10—C9—H9A108.9H29A—C29—H29B107.8
N1—C9—H9B108.9C31—C30—C29114.5 (2)
C10—C9—H9B108.9C31—C30—H30A108.6
H9A—C9—H9B107.7C29—C30—H30A108.6
C11—C10—C9113.5 (2)C31—C30—H30B108.6
C11—C10—H10A108.9C29—C30—H30B108.6
C9—C10—H10A108.9H30A—C30—H30B107.6
C11—C10—H10B108.9C30—C31—C32111.7 (2)
C9—C10—H10B108.9C30—C31—H31A109.3
H10A—C10—H10B107.7C32—C31—H31A109.3
C12—C11—C10112.8 (2)C30—C31—H31B109.3
C12—C11—H11A109.0C32—C31—H31B109.3
C10—C11—H11A109.0H31A—C31—H31B107.9
C12—C11—H11B109.0C31—C32—H32A109.5
C10—C11—H11B109.0C31—C32—H32B109.5
H11A—C11—H11B107.8H32A—C32—H32B109.5
C11—C12—H12A109.5C31—C32—H32C109.5
C11—C12—H12B109.5H32A—C32—H32C109.5
H12A—C12—H12B109.5H32B—C32—H32C109.5
D—H···AD—HH···AD···AD—H···A
C4—H4···O20.952.052.815 (3)137
C24—H24···O10.952.042.805 (3)136
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C4—H4⋯O20.952.052.815 (3)137
C24—H24⋯O10.952.042.805 (3)136
  1 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

  1 in total
  1 in total

1.  Synthesis, crystal structure, DFT calculations and Hirshfeld surface analysis of 2-(1-decyl-2-oxo-indolin-3-yl-idene)propanedi-nitrile.

Authors:  Ibtissam Rayni; Youness El Bakri; Chin-Hung Lai; L'houssaine El Ghayati; El Mokhtar Essassi; Joel T Mague
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2019-01-01
  1 in total

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