Literature DB >> 21522761

(RS)-1-[5-(2-Chloro-prop-yl)indolin-1-yl]ethanone.

Xue-Mei Yang1.   

Abstract

In the title compound, C(13)H(16)ClNO, the n class="Chemical">acetyl-indoline moiety is roughly planar (r.m.s. deviation = 0.0048 Å). The chloro-propyl group is out of the plane and is statistically disordered over two positions. Indeed, the Cl and CH(3) groups located on the stereogenic carbon exchange with each other. The whole crystal is a racemate. Non-classical C-H⋯O hydrogen bonds between symmetry-related benzene rings stabilize the crystal structure.

Entities:  

Year:  2010        PMID: 21522761      PMCID: PMC3050396          DOI: 10.1107/S1600536810050476

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

The title compound was synthesized as an inter­mediate in the search for a new synthetic route to silodosin, an adrenoceptor antagonist, see: Asselin et al. (2000 ▶); Bremner et al. (2000 ▶); Elworthy et al. (1997 ▶); Sorbera et al. (2001 ▶). For related structures, see: Moreno et al. (1998 ▶); Wang et al.(2007 ▶).

Experimental

Crystal data

C13H16ClNO M = 237.72 Triclinic, a = 6.9041 (5) Å b = 8.4887 (6) Å c = 10.6463 (7) Å α = 76.423 (1)° β = 86.955 (1)° γ = 89.969 (1)° V = 605.61 (7) Å3 Z = 2 Mo Kα radiation μ = 0.29 mm−1 T = 173 K 0.46 × 0.41 × 0.22 mm

Data collection

Bruker AXS SMART 1000 CCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 2008a ▶) T min = 0.877, T max = 0.938 4719 measured reflections 2343 independent reflections 1915 reflections with I > 2σ(I) R int = 0.016

Refinement

R[F 2 > 2σ(F 2)] = 0.041 wR(F 2) = 0.113 S = 1.07 2343 reflections 163 parameters 5 restraints H-atom parameters constrained Δρmax = 0.35 e Å−3 Δρmin = −0.19 e Å−3 Data collection: SMART (Bruker, 2001 ▶); cell refinement: SAINT-Plus (Bruker, 2003 ▶); data reduction: SAINT-Plus; program(s) used to solve structure: SHELXTL (Sheldrick, 2008b ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008b ▶); molecular graphics: ORTEPIII (Burnett & Johnson, 1996 ▶), ORTEP-3 for Windows (Farrugia, 1997 ▶) and PLATON (Spek, 2009 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810050476/dn2631sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810050476/dn2631Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C13H16ClNOZ = 2
Mr = 237.72F(000) = 252
Triclinic, P1Dx = 1.304 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 6.9041 (5) ÅCell parameters from 2890 reflections
b = 8.4887 (6) Åθ = 2.5–27.0°
c = 10.6463 (7) ŵ = 0.29 mm1
α = 76.423 (1)°T = 173 K
β = 86.955 (1)°Block, colourless
γ = 89.969 (1)°0.46 × 0.41 × 0.22 mm
V = 605.61 (7) Å3
Bruker AXS SMART 1000 CCD diffractometer2343 independent reflections
Radiation source: fine-focus sealed tube1915 reflections with I > 2σ(I)
graphiteRint = 0.016
ω scansθmax = 26.0°, θmin = 2.0°
Absorption correction: multi-scan (SADABS; Sheldrick, 2008)h = −8→8
Tmin = 0.877, Tmax = 0.938k = −10→10
4719 measured reflectionsl = −13→13
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.041Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.113H-atom parameters constrained
S = 1.07w = 1/[σ2(Fo2) + (0.0478P)2 + 0.2707P] where P = (Fo2 + 2Fc2)/3
2343 reflections(Δ/σ)max = 0.002
163 parametersΔρmax = 0.35 e Å3
5 restraintsΔρmin = −0.19 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
O10.2493 (2)0.69510 (15)0.57618 (13)0.0462 (4)
N10.25327 (19)0.49053 (16)0.47345 (13)0.0306 (3)
C10.2670 (3)0.4283 (2)0.35441 (16)0.0355 (4)
H1A0.39250.46040.30570.043*
H1B0.16050.47110.29770.043*
C20.2505 (3)0.2437 (2)0.40071 (17)0.0371 (4)
H2A0.13650.20190.36540.045*
H2B0.36860.19120.37390.045*
C30.2275 (2)0.21325 (19)0.54586 (16)0.0293 (4)
C40.2056 (2)0.0682 (2)0.63687 (17)0.0328 (4)
H40.2030−0.03090.61010.039*
C50.1872 (2)0.0670 (2)0.76852 (17)0.0331 (4)
C60.1927 (2)0.2141 (2)0.80423 (16)0.0340 (4)
H60.18170.21380.89360.041*
C70.2137 (2)0.3621 (2)0.71377 (16)0.0320 (4)
H70.21650.46140.74030.038*
C80.2304 (2)0.35962 (19)0.58388 (15)0.0278 (4)
C90.2613 (2)0.6503 (2)0.47457 (18)0.0337 (4)
C100.2848 (3)0.7693 (2)0.34518 (19)0.0404 (4)
H10A0.29230.87970.35820.061*
H10B0.17340.75980.29400.061*
H10C0.40420.74600.29920.061*
C110.1537 (3)−0.0898 (2)0.86977 (18)0.0422 (5)
H11A0.0257−0.13520.85810.051*
H11B0.1485−0.06530.95630.051*
C120.3060 (3)−0.2180 (2)0.86693 (18)0.0400 (4)
H12A0.3065−0.24930.78590.048*
Cl10.5409 (4)−0.1512 (3)0.8927 (2)0.0525 (4)0.50
C130.245 (2)−0.3659 (13)0.9768 (12)0.100 (5)0.50
H13A0.2548−0.33801.06050.150*0.50
H13B0.3311−0.45660.97250.150*0.50
H13C0.1111−0.39700.96720.150*0.50
Cl1B0.2300 (4)−0.4048 (3)0.97881 (18)0.0532 (4)0.50
C13B0.4978 (16)−0.1668 (14)0.9079 (13)0.102 (5)0.50
H13D0.5386−0.06210.85160.152*0.50
H13E0.5958−0.24830.90090.152*0.50
H13F0.4834−0.15670.99770.152*0.50
U11U22U33U12U13U23
O10.0608 (9)0.0299 (7)0.0505 (8)0.0026 (6)−0.0098 (6)−0.0135 (6)
N10.0303 (7)0.0277 (7)0.0333 (7)0.0010 (5)−0.0030 (6)−0.0053 (6)
C10.0388 (9)0.0357 (9)0.0312 (9)0.0025 (7)−0.0018 (7)−0.0063 (7)
C20.0447 (10)0.0343 (9)0.0334 (9)−0.0024 (7)0.0009 (7)−0.0106 (7)
C30.0261 (8)0.0299 (8)0.0328 (9)0.0017 (6)−0.0018 (6)−0.0092 (7)
C40.0309 (8)0.0268 (8)0.0409 (10)0.0031 (6)−0.0008 (7)−0.0087 (7)
C50.0260 (8)0.0341 (9)0.0357 (9)0.0046 (7)−0.0005 (7)−0.0016 (7)
C60.0304 (9)0.0420 (10)0.0293 (9)0.0067 (7)−0.0021 (7)−0.0075 (7)
C70.0287 (8)0.0330 (9)0.0366 (9)0.0045 (7)−0.0044 (7)−0.0122 (7)
C80.0218 (7)0.0279 (8)0.0335 (9)0.0024 (6)−0.0033 (6)−0.0063 (6)
C90.0262 (8)0.0279 (8)0.0473 (10)0.0011 (6)−0.0070 (7)−0.0081 (7)
C100.0332 (9)0.0302 (9)0.0534 (11)0.0003 (7)−0.0039 (8)−0.0005 (8)
C110.0401 (10)0.0401 (10)0.0408 (10)0.0038 (8)0.0034 (8)0.0006 (8)
C120.0495 (11)0.0321 (9)0.0361 (10)0.0033 (8)−0.0037 (8)−0.0034 (7)
Cl10.0513 (8)0.0619 (10)0.0492 (7)0.0144 (6)−0.0190 (6)−0.0190 (7)
C130.118 (9)0.030 (6)0.136 (8)0.027 (5)0.001 (5)0.009 (4)
Cl1B0.0777 (10)0.0273 (10)0.0482 (8)0.0008 (7)−0.0027 (6)0.0036 (5)
C13B0.081 (7)0.049 (5)0.161 (10)0.028 (4)−0.026 (6)0.006 (5)
O1—C91.227 (2)C7—H70.9500
N1—C91.360 (2)C9—C101.506 (3)
N1—C81.417 (2)C10—H10A0.9800
N1—C11.482 (2)C10—H10B0.9800
C1—C21.531 (2)C10—H10C0.9800
C1—H1A0.9900C11—C121.517 (3)
C1—H1B0.9900C11—H11A0.9900
C2—C31.505 (2)C11—H11B0.9900
C2—H2A0.9900C12—C13B1.511 (10)
C2—H2B0.9900C12—C131.543 (10)
C3—C41.379 (2)C12—Cl11.774 (3)
C3—C81.395 (2)C12—Cl1B1.804 (3)
C4—C51.398 (2)C12—H12A0.9604
C4—H40.9500C13—H13A0.9800
C5—C61.389 (3)C13—H13B0.9800
C5—C111.513 (2)C13—H13C0.9800
C6—C71.395 (2)C13B—H13D0.9800
C6—H60.9500C13B—H13E0.9800
C7—C81.387 (2)C13B—H13F0.9800
C9—N1—C8125.79 (15)H10A—C10—H10B109.5
C9—N1—C1124.26 (14)C9—C10—H10C109.5
C8—N1—C1109.95 (13)H10A—C10—H10C109.5
N1—C1—C2105.54 (13)H10B—C10—H10C109.5
N1—C1—H1A110.6C5—C11—C12114.95 (15)
C2—C1—H1A110.6C5—C11—H11A108.5
N1—C1—H1B110.6C12—C11—H11A108.5
C2—C1—H1B110.6C5—C11—H11B108.5
H1A—C1—H1B108.8C12—C11—H11B108.5
C3—C2—C1104.39 (13)H11A—C11—H11B107.5
C3—C2—H2A110.9C13B—C12—C11110.8 (5)
C1—C2—H2A110.9C13B—C12—C13103.1 (7)
C3—C2—H2B110.9C11—C12—C13106.5 (6)
C1—C2—H2B110.9C13B—C12—Cl17.7 (6)
H2A—C2—H2B108.9C11—C12—Cl1112.22 (16)
C4—C3—C8120.53 (15)C13—C12—Cl1109.3 (6)
C4—C3—C2129.25 (15)C13B—C12—Cl1B107.8 (5)
C8—C3—C2110.22 (14)C11—C12—Cl1B109.45 (16)
C3—C4—C5120.04 (15)C13—C12—Cl1B7.6 (6)
C3—C4—H4120.0Cl1—C12—Cl1B113.43 (15)
C5—C4—H4120.0C13B—C12—H12A117.2
C6—C5—C4118.45 (15)C11—C12—H12A109.8
C6—C5—C11120.51 (16)C13—C12—H12A108.8
C4—C5—C11120.99 (16)Cl1—C12—H12A110.2
C5—C6—C7122.45 (16)Cl1B—C12—H12A101.2
C5—C6—H6118.8C12—C13—H13A109.5
C7—C6—H6118.8C12—C13—H13B109.5
C8—C7—C6117.80 (15)H13A—C13—H13B109.5
C8—C7—H7121.1C12—C13—H13C109.5
C6—C7—H7121.1H13A—C13—H13C109.5
C7—C8—C3120.73 (15)H13B—C13—H13C109.5
C7—C8—N1129.36 (15)C12—C13B—H13D109.5
C3—C8—N1109.90 (14)C12—C13B—H13E109.5
O1—C9—N1121.52 (16)H13D—C13B—H13E109.5
O1—C9—C10121.67 (16)C12—C13B—H13F109.5
N1—C9—C10116.80 (16)H13D—C13B—H13F109.5
C9—C10—H10A109.5H13E—C13B—H13F109.5
C9—C10—H10B109.5
C9—N1—C1—C2−179.87 (15)C4—C3—C8—N1−179.69 (14)
C8—N1—C1—C2−0.04 (18)C2—C3—C8—N10.25 (18)
N1—C1—C2—C30.17 (17)C9—N1—C8—C7−0.8 (3)
C1—C2—C3—C4179.67 (16)C1—N1—C8—C7179.34 (16)
C1—C2—C3—C8−0.26 (18)C9—N1—C8—C3179.70 (14)
C8—C3—C4—C5−0.4 (2)C1—N1—C8—C3−0.13 (18)
C2—C3—C4—C5179.70 (16)C8—N1—C9—O10.2 (3)
C3—C4—C5—C6−0.4 (2)C1—N1—C9—O1−179.96 (16)
C3—C4—C5—C11177.16 (15)C8—N1—C9—C10−179.55 (14)
C4—C5—C6—C70.7 (2)C1—N1—C9—C100.3 (2)
C11—C5—C6—C7−176.83 (15)C6—C5—C11—C12−125.81 (18)
C5—C6—C7—C8−0.3 (2)C4—C5—C11—C1256.7 (2)
C6—C7—C8—C3−0.4 (2)C5—C11—C12—C13B68.4 (6)
C6—C7—C8—N1−179.86 (15)C5—C11—C12—C13179.9 (6)
C4—C3—C8—C70.8 (2)C5—C11—C12—Cl160.3 (2)
C2—C3—C8—C7−179.27 (14)C5—C11—C12—Cl1B−172.81 (15)
D—H···AD—HH···AD···AD—H···A
C4—H4···O1i0.952.453.388 (2)168.
C12—H12A···O1i0.962.443.388 (2)169.
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C4—H4⋯O1i0.952.453.388 (2)168
C12—H12A⋯O1i0.962.443.388 (2)169

Symmetry code: (i) .

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