Literature DB >> 21522742

3'-O-Acetyl-2'-de-oxy-uridine.

Bogdan Doboszewski, Alexander Y Nazarenko, Victor N Nemykin.   

Abstract

In the two independent but very similar mol-ecules of the title compound, C(11)H(14)N(2)O(6), both nucleobase fragments are nearly planar (both within 0.01 Å) while the furan-ose rings exhibit (2)E-endo envelope conformations. In the crystal, the two 3'-O-acetyl-2'-de-oxy-uridine mol-ecules form a pseudosymmetric dimer of two bases connected via two nearly identical resonance-assisted N-H⋯O hydrogen bonds. The resulting pair is further connected with neighboring pairs via two similar O-H⋯O bonds involving the only hydroxyl group of the 2'-de-oxy-furan-ose fragment and the remaining carbonyl oxygen of the nucleobase. These inter-actions result in the formation of an infinite 'double band' along the b axis that can be considered as a self-assembled analogue of a polynucleotide mol-ecule with non-canonical Watson-Crick base pairs. The infinite chains of 3'-O-acetyl-2'-de-oxy-uridine pairs are additionally held together by C-H⋯O inter-actions involving C atoms of the uracyl base and O atoms of carbonyl groups. Only weak C-H⋯O contacts exist between neighboring chains.

Entities:  

Year:  2010        PMID: 21522742      PMCID: PMC3050423          DOI: 10.1107/S160053681004938X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For syntheses of this and similar compounds, see: Smrt & Sorm (1960 ▶); Cabral et al. (2008 ▶). For related structures of uridines, see: de Graaff et al. (1977 ▶); Green et al. (1975 ▶); Low & Wilson (1984 ▶); Luo et al. (2007 ▶); Marck et al. (1982 ▶); Rahman & Wilson (1972 ▶); Suck et al. (1972 ▶). For conformations of five-membered rings, see: Schwarz (1973 ▶); Cremer & Pople (1975 ▶); Boeyens & Dobson (1987 ▶). For analysis of absolute structure, see: Flack (1983 ▶), Hooft et al. (2008 ▶). For hydrogen bonding in nucleotide chemistry, see: Gilli & Gilli (2009 ▶); Desiraju & Steiner (1999 ▶); Jeffrey (1997 ▶); Nagaswamy et al.(2000 ▶) and references therein. For similar UU-4-carbon­yl–imino pairs in RNA structures, see: Ban et al. (2000 ▶); Jiang & Patel (1998 ▶).

Experimental

Crystal data

C11H14N2O6 M = 270.24 Monoclinic, a = 22.8919 (4) Å b = 6.8676 (1) Å c = 17.2789 (12) Å β = 111.307 (8)° V = 2530.8 (2) Å3 Z = 8 Cu Kα radiation μ = 1.00 mm−1 T = 291 K 0.2 × 0.15 × 0.1 mm

Data collection

Rigaku R-AXIS RAPID II imaging plate diffractometer Absorption correction: multi-scan (ABSCOR; Higashi, 1995 ▶) T min = 0.84, T max = 0.88 11957 measured reflections 4372 independent reflections 2609 reflections with I > 2σ(I) R int = 0.069

Refinement

R[F 2 > 2σ(F 2)] = 0.048 wR(F 2) = 0.149 S = 1.10 4372 reflections 346 parameters 1 restraint H-atom parameters constrained Δρmax = 0.24 e Å−3 Δρmin = −0.24 e Å−3 Absolute structure: Flack (1983 ▶), 1927 Friedel pairs Flack parameter: 0.0 (2) Data collection: CrystalClear-SM Expert (Rigaku, 2009 ▶); cell refinement: CrystalClear-SM Expert; data reduction: CrystalClear-SM Expert; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶) and Mercury (Macrae et al., 2008 ▶); software used to prepare material for publication: PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S160053681004938X/zl2331sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S160053681004938X/zl2331Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report Enhanced figure: interactive version of Fig. 7
C11H14N2O6F(000) = 1136
Mr = 270.24Dx = 1.418 Mg m3
Monoclinic, C2Melting point: 461 K
Hall symbol: C 2yCu Kα radiation, λ = 1.54187 Å
a = 22.8919 (4) ÅCell parameters from 9690 reflections
b = 6.8676 (1) Åθ = 6.8–68.2°
c = 17.2789 (12) ŵ = 1.00 mm1
β = 111.307 (8)°T = 291 K
V = 2530.8 (2) Å3Block, colourless
Z = 80.2 × 0.15 × 0.1 mm
Rigaku R-AXIS RAPID II imaging plate diffractometer4372 independent reflections
Radiation source: fine-focus sealed tube2609 reflections with I > 2σ(I)
graphiteRint = 0.069
Detector resolution: 10 pixels mm-1θmax = 67.0°, θmin = 6.8°
ω scansh = −27→22
Absorption correction: multi-scan (ABSCOR; Higashi, 1995)k = −8→7
Tmin = 0.84, Tmax = 0.88l = −17→20
11957 measured reflections
Refinement on F2Hydrogen site location: inferred from neighbouring sites
Least-squares matrix: fullH-atom parameters constrained
R[F2 > 2σ(F2)] = 0.048w = 1/[σ2(Fo2) + (0.0552P)2 + 0.1596P] where P = (Fo2 + 2Fc2)/3
wR(F2) = 0.149(Δ/σ)max < 0.001
S = 1.10Δρmax = 0.24 e Å3
4372 reflectionsΔρmin = −0.24 e Å3
346 parametersExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
1 restraintExtinction coefficient: 0.0016 (2)
Primary atom site location: structure-invariant direct methodsAbsolute structure: Flack (1983), 1927 Friedel pairs
Secondary atom site location: difference Fourier mapFlack parameter: 0.0 (2)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.46379 (15)0.4346 (4)0.81776 (18)0.0769 (9)
O20.40640 (14)0.0919 (4)1.00331 (19)0.0794 (9)
O30.46084 (12)−0.0505 (4)0.68957 (16)0.0697 (8)
O40.54767 (15)−0.3837 (5)0.7567 (2)0.0912 (11)
H10.5257−0.44390.77690.137*
O50.56917 (13)0.1405 (4)0.63582 (18)0.0689 (8)
O60.59476 (16)−0.0887 (6)0.5611 (2)0.0920 (11)
N10.46541 (16)0.1042 (5)0.8110 (2)0.0590 (9)
N20.43469 (16)0.2568 (5)0.9092 (2)0.0631 (9)
H20.42670.36310.92970.076*
C10.45611 (19)0.2760 (6)0.8447 (2)0.0562 (10)
C20.4246 (2)0.0868 (7)0.9442 (3)0.0698 (12)
C30.4369 (2)−0.0844 (7)0.9075 (3)0.0809 (15)
H3A0.4314−0.20610.92740.097*
C40.4567 (2)−0.0696 (7)0.8439 (3)0.0743 (13)
H4A0.4649−0.18360.82060.089*
C50.48799 (18)0.1107 (6)0.7418 (2)0.0563 (10)
H5A0.47430.23220.71070.068*
C60.55755 (18)0.0894 (6)0.7668 (2)0.0612 (11)
H6A0.57490.01000.81630.073*
H6B0.57810.21530.77670.073*
C70.56437 (19)−0.0114 (6)0.6914 (2)0.0609 (11)
H7A0.6012−0.09650.70820.073*
C80.5048 (2)−0.1272 (6)0.6545 (3)0.0640 (11)
H8A0.4877−0.10630.59430.077*
C90.5126 (2)−0.3445 (7)0.6714 (3)0.0788 (14)
H9A0.4716−0.40470.65590.095*
H9B0.5339−0.40160.63750.095*
C100.5876 (2)0.0811 (9)0.5732 (3)0.0784 (14)
C110.5960 (3)0.2490 (9)0.5245 (3)0.110 (2)
H11A0.63660.24160.52010.164*
H11B0.59280.36800.55180.164*
H11C0.56410.24620.46990.164*
O210.70463 (14)0.1998 (4)0.87917 (18)0.0703 (8)
O220.61778 (17)0.5604 (4)1.0291 (2)0.1020 (13)
O230.78772 (13)0.6734 (4)0.82972 (16)0.0676 (8)
O240.71663 (15)1.0090 (5)0.7407 (2)0.0874 (10)
H240.71811.06620.78300.131*
O250.76788 (13)0.4633 (5)0.65709 (18)0.0737 (9)
O260.80745 (19)0.6677 (7)0.5882 (2)0.1077 (13)
N210.71512 (15)0.5305 (5)0.87739 (19)0.0575 (9)
N220.66228 (16)0.3867 (5)0.9545 (2)0.0647 (9)
H220.65020.28280.97220.078*
C210.6952 (2)0.3601 (7)0.9015 (3)0.0588 (11)
C220.6469 (2)0.5612 (7)0.9816 (3)0.0710 (13)
C230.6674 (2)0.7311 (6)0.9510 (2)0.0638 (12)
H23A0.65860.85440.96630.077*
C240.6993 (2)0.7113 (5)0.9002 (2)0.0610 (11)
H24A0.71140.82280.87940.073*
C250.74536 (19)0.5179 (6)0.8160 (2)0.0582 (10)
H25A0.76790.39400.82250.070*
C260.69949 (18)0.5388 (7)0.7270 (2)0.0625 (11)
H26A0.68280.41340.70340.075*
H26B0.66510.62480.72380.075*
C270.73937 (19)0.6245 (6)0.6843 (2)0.0614 (11)
H27A0.71480.70690.63750.074*
C280.7886 (2)0.7422 (6)0.7511 (3)0.0641 (11)
H28A0.82980.71400.74850.077*
C290.7786 (2)0.9609 (7)0.7462 (3)0.0813 (14)
H29A0.80871.02180.79510.098*
H29B0.78561.01130.69790.098*
C300.7987 (2)0.5034 (9)0.6061 (3)0.0817 (15)
C310.8202 (2)0.3226 (9)0.5769 (3)0.108 (2)
H31A0.84280.35650.54170.162*
H31B0.78460.24430.54630.162*
H31C0.84720.25060.62400.162*
U11U22U33U12U13U23
O10.111 (2)0.0498 (18)0.092 (2)−0.0016 (18)0.0627 (19)0.0023 (17)
O20.103 (2)0.065 (2)0.098 (2)0.0078 (17)0.070 (2)0.0114 (17)
O30.0616 (17)0.0763 (19)0.0791 (19)−0.0050 (16)0.0350 (15)−0.0208 (16)
O40.087 (2)0.080 (2)0.102 (2)−0.0043 (18)0.0301 (19)0.0241 (19)
O50.080 (2)0.0643 (19)0.0775 (19)0.0011 (16)0.0471 (16)0.0052 (16)
O60.108 (3)0.099 (3)0.087 (2)−0.001 (2)0.058 (2)−0.018 (2)
N10.077 (2)0.045 (2)0.072 (2)0.0068 (17)0.0471 (19)0.0022 (17)
N20.085 (2)0.045 (2)0.078 (2)0.0013 (18)0.052 (2)0.0004 (18)
C10.064 (3)0.048 (2)0.069 (3)0.000 (2)0.039 (2)0.000 (2)
C20.084 (3)0.060 (3)0.080 (3)0.002 (2)0.048 (3)0.005 (3)
C30.119 (4)0.049 (3)0.106 (4)0.007 (3)0.078 (3)0.005 (3)
C40.101 (4)0.047 (3)0.095 (3)−0.006 (2)0.059 (3)0.001 (2)
C50.064 (3)0.052 (2)0.065 (2)−0.004 (2)0.038 (2)−0.003 (2)
C60.061 (2)0.065 (3)0.068 (2)−0.005 (2)0.036 (2)−0.007 (2)
C70.061 (3)0.057 (3)0.074 (3)0.001 (2)0.035 (2)0.005 (2)
C80.078 (3)0.058 (3)0.059 (2)−0.001 (2)0.029 (2)−0.005 (2)
C90.090 (3)0.063 (3)0.089 (3)−0.006 (3)0.040 (3)−0.010 (3)
C100.077 (3)0.097 (4)0.073 (3)−0.011 (3)0.040 (3)−0.016 (3)
C110.135 (5)0.127 (5)0.091 (4)−0.033 (4)0.069 (4)0.012 (4)
O210.092 (2)0.0456 (18)0.086 (2)0.0012 (16)0.0480 (17)−0.0062 (16)
O220.160 (3)0.062 (2)0.141 (3)0.013 (2)0.124 (3)0.006 (2)
O230.0711 (18)0.0721 (19)0.0663 (17)−0.0189 (15)0.0328 (14)−0.0018 (15)
O240.084 (2)0.081 (3)0.103 (3)0.0105 (18)0.0398 (18)−0.015 (2)
O250.083 (2)0.077 (2)0.078 (2)−0.0012 (18)0.0493 (17)−0.0081 (17)
O260.119 (3)0.125 (3)0.107 (3)0.007 (3)0.074 (2)0.025 (3)
N210.067 (2)0.052 (2)0.063 (2)0.0026 (16)0.0364 (17)0.0013 (17)
N220.084 (2)0.050 (2)0.082 (2)0.0043 (18)0.055 (2)0.0060 (18)
C210.071 (3)0.050 (3)0.060 (2)−0.005 (2)0.030 (2)0.001 (2)
C220.098 (4)0.049 (3)0.077 (3)0.010 (2)0.045 (3)0.004 (2)
C230.087 (3)0.046 (3)0.072 (3)0.007 (2)0.045 (3)−0.001 (2)
C240.083 (3)0.040 (2)0.069 (3)0.002 (2)0.038 (2)0.005 (2)
C250.064 (2)0.053 (3)0.068 (3)−0.001 (2)0.038 (2)0.003 (2)
C260.061 (3)0.065 (3)0.066 (3)−0.006 (2)0.029 (2)−0.007 (2)
C270.064 (3)0.062 (3)0.064 (2)0.004 (2)0.031 (2)−0.002 (2)
C280.066 (3)0.064 (3)0.076 (3)−0.001 (2)0.043 (2)0.003 (2)
C290.093 (4)0.071 (3)0.093 (3)−0.008 (3)0.048 (3)−0.006 (3)
C300.068 (3)0.108 (5)0.076 (3)−0.004 (3)0.034 (3)−0.002 (3)
C310.092 (4)0.141 (6)0.113 (4)−0.020 (4)0.063 (3)−0.052 (4)
O1—C11.223 (5)O21—C211.212 (5)
O2—C21.236 (5)O22—C221.230 (5)
O3—C51.421 (5)O23—C251.404 (4)
O3—C81.449 (4)O23—C281.445 (4)
O4—C91.425 (5)O24—C291.425 (5)
O4—H10.8200O24—H240.8200
O5—C101.358 (5)O25—C301.342 (5)
O5—C71.449 (5)O25—C271.447 (5)
O6—C101.207 (6)O26—C301.206 (6)
N1—C41.367 (5)N21—C211.375 (5)
N1—C11.366 (5)N21—C241.390 (5)
N1—C51.467 (4)N21—C251.464 (5)
N2—C21.373 (5)N22—C221.379 (5)
N2—C11.376 (4)N22—C211.392 (5)
N2—H20.8600N22—H220.8600
C2—C31.412 (6)C22—C231.429 (6)
C3—C41.336 (5)C23—C241.337 (5)
C3—H3A0.9300C23—H23A0.9300
C4—H4A0.9300C24—H24A0.9300
C5—C61.498 (5)C25—C261.522 (5)
C5—H5A0.9800C25—H25A0.9800
C6—C71.532 (5)C26—C271.488 (5)
C6—H6A0.9700C26—H26A0.9700
C6—H6B0.9700C26—H26B0.9700
C7—C81.506 (6)C27—C281.520 (6)
C7—H7A0.9800C27—H27A0.9800
C8—C91.519 (6)C28—C291.517 (7)
C8—H8A0.9800C28—H28A0.9800
C9—H9A0.9700C29—H29A0.9700
C9—H9B0.9700C29—H29B0.9700
C10—C111.482 (7)C30—C311.489 (7)
C11—H11A0.9600C31—H31A0.9600
C11—H11B0.9600C31—H31B0.9600
C11—H11C0.9600C31—H31C0.9600
C5—O3—C8109.8 (3)C25—O23—C28109.6 (3)
C9—O4—H1109.5C29—O24—H24109.5
C10—O5—C7115.6 (4)C30—O25—C27117.6 (4)
C4—N1—C1120.5 (3)C21—N21—C24121.7 (3)
C4—N1—C5120.9 (4)C21—N21—C25117.7 (3)
C1—N1—C5118.5 (3)C24—N21—C25119.9 (3)
C2—N2—C1127.2 (4)C22—N22—C21127.1 (4)
C2—N2—H2116.4C22—N22—H22116.4
C1—N2—H2116.4C21—N22—H22116.4
O1—C1—N1122.7 (4)O21—C21—N21124.0 (4)
O1—C1—N2122.5 (4)O21—C21—N22122.0 (4)
N1—C1—N2114.7 (4)N21—C21—N22114.0 (4)
O2—C2—N2120.1 (4)O22—C22—N22119.3 (4)
O2—C2—C3125.3 (4)O22—C22—C23125.5 (4)
N2—C2—C3114.6 (4)N22—C22—C23115.2 (4)
C4—C3—C2119.3 (4)C24—C23—C22119.4 (4)
C4—C3—H3A120.4C24—C23—H23A120.3
C2—C3—H3A120.4C22—C23—H23A120.3
C3—C4—N1123.5 (4)C23—C24—N21122.5 (4)
C3—C4—H4A118.2C23—C24—H24A118.7
N1—C4—H4A118.2N21—C24—H24A118.7
O3—C5—N1107.0 (3)O23—C25—N21108.2 (3)
O3—C5—C6106.3 (3)O23—C25—C26106.2 (3)
N1—C5—C6114.5 (3)N21—C25—C26113.1 (3)
O3—C5—H5A109.6O23—C25—H25A109.7
N1—C5—H5A109.6N21—C25—H25A109.7
C6—C5—H5A109.6C26—C25—H25A109.7
C5—C6—C7103.0 (3)C27—C26—C25102.5 (3)
C5—C6—H6A111.2C27—C26—H26A111.3
C7—C6—H6A111.2C25—C26—H26A111.3
C5—C6—H6B111.2C27—C26—H26B111.3
C7—C6—H6B111.2C25—C26—H26B111.3
H6A—C6—H6B109.1H26A—C26—H26B109.2
O5—C7—C8112.0 (3)O25—C27—C26106.8 (3)
O5—C7—C6107.1 (3)O25—C27—C28110.8 (3)
C8—C7—C6104.0 (3)C26—C27—C28104.6 (3)
O5—C7—H7A111.2O25—C27—H27A111.4
C8—C7—H7A111.2C26—C27—H27A111.4
C6—C7—H7A111.2C28—C27—H27A111.4
O3—C8—C7106.9 (3)O23—C28—C29108.8 (4)
O3—C8—C9109.1 (4)O23—C28—C27106.3 (3)
C7—C8—C9114.3 (4)C29—C28—C27115.4 (4)
O3—C8—H8A108.8O23—C28—H28A108.7
C7—C8—H8A108.8C29—C28—H28A108.7
C9—C8—H8A108.8C27—C28—H28A108.7
O4—C9—C8111.6 (4)O24—C29—C28111.1 (4)
O4—C9—H9A109.3O24—C29—H29A109.4
C8—C9—H9A109.3C28—C29—H29A109.4
O4—C9—H9B109.3O24—C29—H29B109.4
C8—C9—H9B109.3C28—C29—H29B109.4
H9A—C9—H9B108.0H29A—C29—H29B108.0
O6—C10—O5122.0 (5)O26—C30—O25122.4 (5)
O6—C10—C11126.8 (5)O26—C30—C31125.9 (5)
O5—C10—C11111.2 (5)O25—C30—C31111.6 (5)
C10—C11—H11A109.5C30—C31—H31A109.5
C10—C11—H11B109.5C30—C31—H31B109.5
H11A—C11—H11B109.5H31A—C31—H31B109.5
C10—C11—H11C109.5C30—C31—H31C109.5
H11A—C11—H11C109.5H31A—C31—H31C109.5
H11B—C11—H11C109.5H31B—C31—H31C109.5
C4—N1—C1—O1179.5 (4)C24—N21—C21—O21175.5 (4)
C5—N1—C1—O12.5 (6)C25—N21—C21—O214.8 (6)
C4—N1—C1—N2−3.3 (6)C24—N21—C21—N22−4.2 (6)
C5—N1—C1—N2179.8 (3)C25—N21—C21—N22−174.8 (3)
C2—N2—C1—O1−179.8 (4)C22—N22—C21—O21−177.5 (4)
C2—N2—C1—N13.0 (6)C22—N22—C21—N212.1 (6)
C1—N2—C2—O2178.5 (4)C21—N22—C22—O22−179.5 (4)
C1—N2—C2—C3−1.3 (7)C21—N22—C22—C230.1 (7)
O2—C2—C3—C4−179.8 (5)O22—C22—C23—C24179.3 (4)
N2—C2—C3—C4−0.1 (7)N22—C22—C23—C24−0.3 (6)
C2—C3—C4—N1−0.5 (8)C22—C23—C24—N21−1.8 (7)
C1—N1—C4—C32.3 (7)C21—N21—C24—C234.3 (6)
C5—N1—C4—C3179.2 (4)C25—N21—C24—C23174.7 (4)
C8—O3—C5—N1−144.8 (3)C28—O23—C25—N21−144.4 (3)
C8—O3—C5—C6−22.1 (4)C28—O23—C25—C26−22.7 (4)
C4—N1—C5—O336.1 (5)C21—N21—C25—O23−151.1 (3)
C1—N1—C5—O3−146.9 (3)C24—N21—C25—O2338.1 (5)
C4—N1—C5—C6−81.4 (5)C21—N21—C25—C2691.5 (4)
C1—N1—C5—C695.6 (5)C24—N21—C25—C26−79.3 (5)
O3—C5—C6—C731.3 (4)O23—C25—C26—C2732.7 (4)
N1—C5—C6—C7149.2 (3)N21—C25—C26—C27151.3 (3)
C10—O5—C7—C8−78.8 (5)C30—O25—C27—C26170.3 (4)
C10—O5—C7—C6167.8 (3)C30—O25—C27—C28−76.3 (5)
C5—C6—C7—O590.1 (4)C25—C26—C27—O2588.0 (4)
C5—C6—C7—C8−28.7 (4)C25—C26—C27—C28−29.6 (4)
C5—O3—C8—C73.2 (4)C25—O23—C28—C29128.5 (4)
C5—O3—C8—C9127.3 (4)C25—O23—C28—C273.6 (4)
O5—C7—C8—O3−99.0 (4)O25—C27—C28—O23−97.5 (4)
C6—C7—C8—O316.3 (4)C26—C27—C28—O2317.3 (4)
O5—C7—C8—C9140.2 (4)O25—C27—C28—C29141.8 (4)
C6—C7—C8—C9−104.5 (4)C26—C27—C28—C29−103.5 (4)
O3—C8—C9—O4−72.2 (5)O23—C28—C29—O24−68.0 (5)
C7—C8—C9—O447.4 (6)C27—C28—C29—O2451.4 (5)
C7—O5—C10—O65.4 (7)C27—O25—C30—O266.2 (7)
C7—O5—C10—C11−175.3 (4)C27—O25—C30—C31−174.6 (4)
D—H···AD—HH···AD···AD—H···A
O4—H1···O1i0.821.982.798 (5)173
N2—H2···O22ii0.861.982.803 (5)161
N22—H22···O2ii0.861.992.817 (5)160
O24—H24···O21iii0.822.022.828 (5)170
C3—H3A···O22iv0.932.243.117 (6)157
C23—H23A···O2v0.932.393.254 (5)154
C24—H24A···O21iii0.932.593.381 (5)143
C31—H31B···O26vi0.962.563.428 (8)150
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O4—H1⋯O1i0.821.982.798 (5)173
N2—H2⋯O22ii0.861.982.803 (5)161
N22—H22⋯O2ii0.861.992.817 (5)160
O24—H24⋯O21iii0.822.022.828 (5)170
C3—H3A⋯O22iv0.932.243.117 (6)157
C23—H23A⋯O2v0.932.393.254 (5)154
C24—H24A⋯O21iii0.932.593.381 (5)143
C31—H31B⋯O26vi0.962.563.428 (8)150

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) ; (vi) .

  8 in total

1.  Database of non-canonical base pairs found in known RNA structures.

Authors:  U Nagaswamy; N Voss; Z Zhang; G E Fox
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

2.  The complete atomic structure of the large ribosomal subunit at 2.4 A resolution.

Authors:  N Ban; P Nissen; J Hansen; P B Moore; T A Steitz
Journal:  Science       Date:  2000-08-11       Impact factor: 47.728

3.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

4.  Solution structure of the tobramycin-RNA aptamer complex.

Authors:  L Jiang; D J Patel
Journal:  Nat Struct Biol       Date:  1998-09

5.  Molecular and crystal structure of 2'-chloro-2'-deoxyuridine.

Authors:  D Suck; W Saenger; J Hobbs
Journal:  Biochim Biophys Acta       Date:  1972-01-31

6.  Protecting groups transfer: unusual method of removal of tr and tbdms groups by transetherification.

Authors:  Nadia L D Cabral; Luciano Hoeltgebaum Thiessen; Bogdan Doboszewski
Journal:  Nucleosides Nucleotides Nucleic Acids       Date:  2008-08       Impact factor: 1.381

7.  Determination of absolute structure using Bayesian statistics on Bijvoet differences.

Authors:  Rob W W Hooft; Leo H Straver; Anthony L Spek
Journal:  J Appl Crystallogr       Date:  2008-01-16       Impact factor: 3.304

8.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  8 in total

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