Literature DB >> 21522738

Methyl 6'-amino-5'-cyano-2'-methyl-2-oxospiro-[indoline-3,4'-pyran]-3'-carboxyl-ate.

Song-Lei Zhu1, Ting Liu.   

Abstract

In the mol-ecule of the title compound, C(16)H(13)N(3)O(4), the atoms of the spiro pyran ring are nearly planar with a maximum deviation of 0.095 (2) Å. The indole and pyran rings are oriented at a dihedral angle of 87.3 (9)°. In the crystal, mol-ecules are linked by inter-molecular N-H⋯N and N-H⋯O hydrogen bonds.

Entities:  

Year:  2010        PMID: 21522738      PMCID: PMC3050260          DOI: 10.1107/S1600536810053274

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the indole nucleus, see: Da-Silva et al. (2001 ▶). Compounds carrying the indole moiety exhibit anti­bacterial and fungicidal activity, see: Joshi & Chand (1982 ▶). Spiro­oxindole ring systems are found in a number of alkaloids like horsifiline, spiro­tryprostatin and elacomine, see: Abdel-Rahman et al. (2004 ▶). For our work on the preparation of heterocyclic compounds involving indole derivatives, see: Zhu et al. (2007 ▶).

Experimental

Crystal data

C16H13N3O4 M = 311.29 Monoclinic, a = 15.0260 (15) Å b = 10.0614 (11) Å c = 10.4862 (12) Å β = 105.956 (1)° V = 1524.3 (3) Å3 Z = 4 Mo Kα radiation μ = 0.10 mm−1 T = 298 K 0.48 × 0.46 × 0.30 mm

Data collection

Bruker SMART CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.954, T max = 0.971 7311 measured reflections 2686 independent reflections 1868 reflections with I > 2σ(I) R int = 0.032

Refinement

R[F 2 > 2σ(F 2)] = 0.045 wR(F 2) = 0.127 S = 1.04 2686 reflections 210 parameters H-atom parameters constrained Δρmax = 0.21 e Å−3 Δρmin = −0.26 e Å−3 Data collection: SMART (Bruker, 2004 ▶); cell refinement: SAINT (Bruker, 2004 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810053274/bx2334sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810053274/bx2334Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C16H13N3O4F(000) = 648
Mr = 311.29Dx = 1.357 Mg m3
Monoclinic, P21/cMelting point = 535–536 K
Hall symbol: -P 2ybcMo Kα radiation, λ = 0.71073 Å
a = 15.0260 (15) ÅCell parameters from 2324 reflections
b = 10.0614 (11) Åθ = 2.5–25.2°
c = 10.4862 (12) ŵ = 0.10 mm1
β = 105.956 (1)°T = 298 K
V = 1524.3 (3) Å3Block, colorless
Z = 40.48 × 0.46 × 0.30 mm
Bruker SMART CCD area-detector diffractometer2686 independent reflections
Radiation source: fine-focus sealed tube1868 reflections with I > 2σ(I)
graphiteRint = 0.032
phi and ω scansθmax = 25.0°, θmin = 1.4°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −17→17
Tmin = 0.954, Tmax = 0.971k = −11→11
7311 measured reflectionsl = −10→12
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.045Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.127H-atom parameters constrained
S = 1.04w = 1/[σ2(Fo2) + (0.0591P)2 + 0.418P] where P = (Fo2 + 2Fc2)/3
2686 reflections(Δ/σ)max < 0.001
210 parametersΔρmax = 0.21 e Å3
0 restraintsΔρmin = −0.26 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
N10.19598 (12)0.37685 (18)0.79711 (19)0.0494 (5)
H10.17690.31910.84410.059*
N20.04118 (12)0.68602 (18)0.34455 (18)0.0465 (5)
H2A0.02440.61670.29580.056*
H2B0.01960.76280.31590.056*
N30.10939 (15)0.3376 (2)0.4093 (2)0.0615 (6)
O10.08135 (10)0.53203 (14)0.77799 (14)0.0455 (4)
O20.11839 (10)0.79566 (13)0.52291 (15)0.0471 (4)
O30.31267 (10)0.62292 (17)0.91261 (15)0.0547 (4)
O40.35592 (12)0.82091 (18)0.85572 (19)0.0712 (6)
C10.15256 (14)0.4927 (2)0.7562 (2)0.0384 (5)
C20.20453 (13)0.56267 (19)0.66513 (19)0.0349 (5)
C30.28596 (13)0.4696 (2)0.6779 (2)0.0407 (5)
C40.27590 (15)0.3614 (2)0.7541 (2)0.0464 (6)
C50.33919 (17)0.2580 (2)0.7802 (3)0.0633 (7)
H50.33230.18570.83190.076*
C60.41318 (19)0.2672 (3)0.7260 (3)0.0727 (9)
H60.45670.19910.74130.087*
C70.42407 (17)0.3739 (3)0.6501 (3)0.0697 (8)
H70.47490.37740.61570.084*
C80.35978 (15)0.4768 (3)0.6242 (2)0.0528 (6)
H80.36650.54870.57200.063*
C90.30534 (14)0.7262 (2)0.8305 (2)0.0436 (5)
C100.23047 (13)0.7054 (2)0.7079 (2)0.0369 (5)
C110.18724 (14)0.8094 (2)0.6392 (2)0.0405 (5)
C120.19903 (19)0.9537 (2)0.6704 (3)0.0595 (7)
H12A0.23370.96500.76140.089*
H12B0.13930.99450.65620.089*
H12C0.23160.99470.61390.089*
C130.39267 (17)0.6183 (3)1.0257 (3)0.0714 (8)
H13A0.44660.64370.99930.107*
H13B0.40060.52961.06080.107*
H13C0.38430.67841.09250.107*
C140.14114 (13)0.56297 (19)0.52501 (19)0.0344 (5)
C150.10030 (13)0.67441 (19)0.4638 (2)0.0354 (5)
C160.12260 (14)0.4396 (2)0.4595 (2)0.0386 (5)
U11U22U33U12U13U23
N10.0516 (11)0.0375 (11)0.0572 (13)−0.0057 (9)0.0114 (9)0.0099 (9)
N20.0498 (11)0.0354 (10)0.0468 (12)−0.0004 (8)0.0007 (9)0.0029 (8)
N30.0726 (14)0.0394 (12)0.0652 (14)0.0061 (10)0.0069 (11)−0.0167 (10)
O10.0468 (9)0.0417 (9)0.0516 (10)−0.0092 (7)0.0195 (7)−0.0068 (7)
O20.0572 (9)0.0292 (8)0.0498 (10)−0.0015 (7)0.0064 (8)−0.0020 (7)
O30.0523 (9)0.0615 (11)0.0430 (10)−0.0108 (8)0.0008 (8)−0.0016 (8)
O40.0635 (11)0.0758 (13)0.0673 (12)−0.0367 (10)0.0062 (9)−0.0110 (10)
C10.0398 (11)0.0331 (12)0.0390 (12)−0.0088 (9)0.0053 (9)−0.0050 (9)
C20.0345 (10)0.0324 (11)0.0363 (11)−0.0034 (8)0.0071 (9)−0.0007 (9)
C30.0358 (11)0.0414 (13)0.0401 (12)−0.0010 (9)0.0022 (9)−0.0051 (10)
C40.0409 (12)0.0388 (12)0.0513 (14)−0.0006 (10)−0.0014 (10)−0.0034 (10)
C50.0586 (15)0.0441 (15)0.0705 (18)0.0072 (12)−0.0105 (14)0.0011 (12)
C60.0519 (15)0.0648 (19)0.086 (2)0.0207 (14)−0.0061 (15)−0.0161 (16)
C70.0434 (14)0.085 (2)0.076 (2)0.0112 (14)0.0082 (13)−0.0167 (17)
C80.0405 (12)0.0635 (16)0.0523 (15)0.0028 (11)0.0091 (11)−0.0049 (12)
C90.0409 (11)0.0503 (14)0.0415 (13)−0.0119 (11)0.0148 (10)−0.0103 (11)
C100.0387 (11)0.0376 (12)0.0365 (12)−0.0106 (9)0.0140 (9)−0.0054 (9)
C110.0456 (12)0.0337 (12)0.0444 (13)−0.0115 (9)0.0162 (10)−0.0070 (10)
C120.0803 (17)0.0336 (13)0.0654 (17)−0.0135 (12)0.0217 (14)−0.0105 (11)
C130.0563 (16)0.098 (2)0.0504 (16)0.0052 (15)−0.0013 (13)−0.0040 (15)
C140.0353 (10)0.0304 (11)0.0372 (12)−0.0012 (8)0.0094 (9)−0.0029 (9)
C150.0363 (11)0.0303 (11)0.0400 (13)−0.0037 (8)0.0110 (10)−0.0030 (9)
C160.0405 (11)0.0354 (13)0.0378 (12)0.0051 (9)0.0070 (9)−0.0005 (10)
N1—C11.347 (3)C4—C51.385 (3)
N1—C41.403 (3)C5—C61.384 (4)
N1—H10.8600C5—H50.9300
N2—C151.325 (3)C6—C71.372 (4)
N2—H2A0.8600C6—H60.9300
N2—H2B0.8600C7—C81.391 (3)
N3—C161.146 (3)C7—H70.9300
O1—C11.220 (2)C8—H80.9300
O2—C151.361 (2)C9—C101.472 (3)
O2—C111.372 (3)C10—C111.333 (3)
O3—C91.334 (3)C11—C121.489 (3)
O3—C131.439 (3)C12—H12A0.9600
O4—C91.202 (2)C12—H12B0.9600
C1—C21.558 (3)C12—H12C0.9600
C2—C141.515 (3)C13—H13A0.9600
C2—C31.517 (3)C13—H13B0.9600
C2—C101.523 (3)C13—H13C0.9600
C3—C81.377 (3)C14—C151.352 (3)
C3—C41.382 (3)C14—C161.409 (3)
C1—N1—C4112.07 (18)C3—C8—C7118.4 (2)
C1—N1—H1124.0C3—C8—H8120.8
C4—N1—H1124.0C7—C8—H8120.8
C15—N2—H2A120.0O4—C9—O3122.7 (2)
C15—N2—H2B120.0O4—C9—C10126.1 (2)
H2A—N2—H2B120.0O3—C9—C10111.16 (18)
C15—O2—C11120.13 (15)C11—C10—C9120.16 (19)
C9—O3—C13117.34 (19)C11—C10—C2122.26 (18)
O1—C1—N1126.4 (2)C9—C10—C2117.58 (18)
O1—C1—C2125.59 (19)C10—C11—O2122.51 (17)
N1—C1—C2107.80 (18)C10—C11—C12129.5 (2)
C14—C2—C3111.31 (16)O2—C11—C12107.98 (18)
C14—C2—C10108.97 (16)C11—C12—H12A109.5
C3—C2—C10114.92 (16)C11—C12—H12B109.5
C14—C2—C1107.93 (15)H12A—C12—H12B109.5
C3—C2—C1101.24 (16)C11—C12—H12C109.5
C10—C2—C1112.12 (16)H12A—C12—H12C109.5
C8—C3—C4120.4 (2)H12B—C12—H12C109.5
C8—C3—C2130.7 (2)O3—C13—H13A109.5
C4—C3—C2108.86 (18)O3—C13—H13B109.5
C3—C4—C5121.8 (2)H13A—C13—H13B109.5
C3—C4—N1109.75 (18)O3—C13—H13C109.5
C5—C4—N1128.4 (2)H13A—C13—H13C109.5
C6—C5—C4117.0 (3)H13B—C13—H13C109.5
C6—C5—H5121.5C15—C14—C16119.74 (18)
C4—C5—H5121.5C15—C14—C2122.94 (17)
C7—C6—C5121.8 (3)C16—C14—C2117.29 (17)
C7—C6—H6119.1N2—C15—C14128.29 (19)
C5—C6—H6119.1N2—C15—O2110.40 (17)
C6—C7—C8120.6 (3)C14—C15—O2121.30 (18)
C6—C7—H7119.7N3—C16—C14178.0 (2)
C8—C7—H7119.7
C4—N1—C1—O1179.4 (2)O3—C9—C10—C11153.2 (2)
C4—N1—C1—C24.4 (2)O4—C9—C10—C2152.4 (2)
O1—C1—C2—C14−63.3 (2)O3—C9—C10—C2−26.1 (3)
N1—C1—C2—C14111.82 (18)C14—C2—C10—C1112.2 (3)
O1—C1—C2—C3179.74 (19)C3—C2—C10—C11137.8 (2)
N1—C1—C2—C3−5.2 (2)C1—C2—C10—C11−107.3 (2)
O1—C1—C2—C1056.7 (3)C14—C2—C10—C9−168.64 (16)
N1—C1—C2—C10−128.16 (18)C3—C2—C10—C9−42.9 (2)
C14—C2—C3—C867.4 (3)C1—C2—C10—C971.9 (2)
C10—C2—C3—C8−57.0 (3)C9—C10—C11—O2178.62 (18)
C1—C2—C3—C8−178.1 (2)C2—C10—C11—O2−2.2 (3)
C14—C2—C3—C4−110.22 (19)C9—C10—C11—C12−3.6 (3)
C10—C2—C3—C4125.30 (19)C2—C10—C11—C12175.6 (2)
C1—C2—C3—C44.3 (2)C15—O2—C11—C10−9.0 (3)
C8—C3—C4—C50.6 (3)C15—O2—C11—C12172.84 (18)
C2—C3—C4—C5178.6 (2)C3—C2—C14—C15−140.8 (2)
C8—C3—C4—N1−179.97 (19)C10—C2—C14—C15−13.0 (3)
C2—C3—C4—N1−2.0 (2)C1—C2—C14—C15108.9 (2)
C1—N1—C4—C3−1.6 (2)C3—C2—C14—C1641.4 (2)
C1—N1—C4—C5177.7 (2)C10—C2—C14—C16169.18 (17)
C3—C4—C5—C6−0.4 (3)C1—C2—C14—C16−68.8 (2)
N1—C4—C5—C6−179.6 (2)C16—C14—C15—N20.6 (3)
C4—C5—C6—C70.3 (4)C2—C14—C15—N2−177.10 (18)
C5—C6—C7—C8−0.6 (4)C16—C14—C15—O2−178.37 (18)
C4—C3—C8—C7−0.8 (3)C2—C14—C15—O23.9 (3)
C2—C3—C8—C7−178.3 (2)C11—O2—C15—N2−171.11 (16)
C6—C7—C8—C30.8 (4)C11—O2—C15—C148.0 (3)
C13—O3—C9—O4−9.1 (3)C15—C14—C16—N3176 (100)
C13—O3—C9—C10169.40 (19)C2—C14—C16—N3−6(7)
O4—C9—C10—C11−28.4 (3)
D—H···AD—HH···AD···AD—H···A
N1—H1···N3i0.862.092.928 (3)165
N2—H2A···O1ii0.862.172.925 (2)147
N2—H2B···O1iii0.862.343.022 (2)136
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1⋯N3i0.862.092.928 (3)165
N2—H2A⋯O1ii0.862.172.925 (2)147
N2—H2B⋯O1iii0.862.343.022 (2)136

Symmetry codes: (i) ; (ii) ; (iii) .

  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

Review 2.  Biologically active indole derivatives.

Authors:  K C Joshi; P Chand
Journal:  Pharmazie       Date:  1982-01       Impact factor: 1.267

3.  Synthesis and evaluation of some new spiro indoline-based heterocycles as potentially active antimicrobial agents.

Authors:  A H Abdel-Rahman; E M Keshk; M A Hanna; Sh M el-Bady
Journal:  Bioorg Med Chem       Date:  2004-05-01       Impact factor: 3.641

  3 in total

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