Literature DB >> 21522714

Redetermination of the salt hexa-methyl-ene-tetra-minium fumarate.

Andreas Lemmerer1.   

Abstract

THE CRYSTAL STRUCTURE OF THE TITLE COMPOUND [SYSTEMATIC NAME: 3,5,7-triaza-1-azoniatricyclo-[3.3.1.1(3,7)]decane (E)-3-carb-oxy-prop-2-enoate], C(6)H(13)N(4) (+)·C(4)H(3)O(4) (-), had been determined previously by Bowes et al. [Acta Cryst. (2003), B59, 100-117]. Their structure contained an approximately 3:1 ratio of fumarate and succinate monoanions disordered over the same position. The succinate anion component forms a similar structural role to the fumarate anion and came about due to an impurity in the starting material, fumaric acid. In this work, the crystal structure of the pure salt is presented, which is identical, apart from the lack of disorder of the anions, to the previous structure. In the crystal, the ions assemble in the solid state, forming chains via N(+)-H⋯O(-) and O-H⋯O(-) hydrogen bonds, which are linked into a three-dimensional network by C-H⋯O inter-actions.

Entities:  

Year:  2010        PMID: 21522714      PMCID: PMC3050185          DOI: 10.1107/S1600536810052700

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the previous synthesis and structure determination, see: Bowes et al. (2003 ▶). For graph-set nomenclature of hydrogen bonds, see: Bernstein et al. (1995 ▶).

Experimental

Crystal data

C6H13N4C4H3O4 M = 256.27 Monoclinic, a = 6.3020 (3) Å b = 16.0828 (8) Å c = 11.2205 (6) Å β = 95.930 (2)° V = 1131.15 (10) Å3 Z = 4 Mo Kα radiation μ = 0.12 mm−1 T = 173 K 0.4 × 0.26 × 0.1 mm

Data collection

Bruker APEXII CCD area-detector diffractometer Absorption correction: integration (XPREP; Bruker, 2004 ▶) T min = 0.936, T max = 0.989 12032 measured reflections 2733 independent reflections 2263 reflections with I > 2σ(I) R int = 0.114

Refinement

R[F 2 > 2σ(F 2)] = 0.045 wR(F 2) = 0.128 S = 1.04 2733 reflections 169 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.36 e Å−3 Δρmin = −0.26 e Å−3 Data collection: APEX2 (Bruker, 2005 ▶); cell refinement: SAINT-Plus (Bruker, 2004 ▶); data reduction: SAINT-Plus and XPREP (Bruker, 2004 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶) and DIAMOND (Brandenburg, 1999 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶) and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810052700/bt5439sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810052700/bt5439Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C6H13N4+·C4H3O4F(000) = 544
Mr = 256.27Dx = 1.505 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 4463 reflections
a = 6.3020 (3) Åθ = 2.2–28.3°
b = 16.0828 (8) ŵ = 0.12 mm1
c = 11.2205 (6) ÅT = 173 K
β = 95.930 (2)°Block, colourless
V = 1131.15 (10) Å30.4 × 0.26 × 0.1 mm
Z = 4
Bruker APEXII CCD area-detector diffractometer2263 reflections with I > 2σ(I)
ω scansRint = 0.114
Absorption correction: integration (XPREP; Bruker, 2004)θmax = 28.0°, θmin = 2.2°
Tmin = 0.936, Tmax = 0.989h = −8→8
12032 measured reflectionsk = −21→21
2733 independent reflectionsl = −11→14
Refinement on F20 restraints
Least-squares matrix: fullH atoms treated by a mixture of independent and constrained refinement
R[F2 > 2σ(F2)] = 0.045w = 1/[σ2(Fo2) + (0.0679P)2 + 0.1146P] where P = (Fo2 + 2Fc2)/3
wR(F2) = 0.128(Δ/σ)max = 0.001
S = 1.04Δρmax = 0.36 e Å3
2733 reflectionsΔρmin = −0.26 e Å3
169 parameters
Experimental. Numerical integration absorption corrections based on indexed crystal faces were applied using the XPREP routine (Bruker, 2004)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
xyzUiso*/Ueq
C10.5255 (2)0.82554 (8)0.61723 (12)0.0247 (3)
H1A0.51180.83850.70240.03*
H1B0.67560.810.60980.03*
C20.2451 (2)0.91915 (8)0.55450 (13)0.0272 (3)
H2A0.2070.96930.50570.033*
H2B0.22810.93260.63910.033*
C30.1515 (2)0.77886 (9)0.58785 (13)0.0262 (3)
H3A0.05460.73250.56150.031*
H3B0.13340.79150.67260.031*
C40.4040 (2)0.73544 (8)0.44620 (12)0.0232 (3)
H4A0.55310.71910.43760.028*
H4B0.30970.68860.41820.028*
C50.4895 (2)0.87723 (9)0.41791 (12)0.0271 (3)
H5A0.45440.9270.36780.033*
H5B0.63940.86190.40960.033*
C60.1277 (2)0.83150 (9)0.38914 (12)0.0266 (3)
H6A0.03180.78510.36160.032*
H6B0.0870.88050.33840.032*
N10.37969 (18)0.75391 (7)0.57675 (10)0.0208 (3)
H10.409 (3)0.7097 (12)0.6156 (16)0.031*
N20.46828 (19)0.89757 (7)0.54400 (10)0.0243 (3)
N30.09872 (18)0.85121 (7)0.51461 (10)0.0244 (3)
N40.34884 (19)0.80830 (7)0.37423 (10)0.0239 (3)
C70.6729 (2)0.58907 (8)0.63638 (11)0.0176 (3)
C80.7983 (2)0.50985 (8)0.64094 (11)0.0182 (3)
H80.72370.45850.64060.022*
C91.00774 (19)0.50863 (8)0.64536 (11)0.0173 (3)
H91.08250.55990.64510.021*
C101.1315 (2)0.42962 (8)0.65074 (11)0.0180 (3)
O10.46931 (14)0.58179 (6)0.62743 (8)0.0214 (2)
O20.76697 (15)0.65634 (6)0.64178 (10)0.0281 (3)
O31.33649 (14)0.43696 (6)0.64341 (9)0.0220 (2)
H31.382 (3)0.4983 (12)0.6347 (15)0.033*
O41.04798 (15)0.36217 (6)0.66187 (10)0.0305 (3)
U11U22U33U12U13U23
C10.0283 (7)0.0205 (7)0.0229 (6)−0.0018 (5)−0.0083 (5)−0.0022 (5)
C20.0381 (8)0.0157 (6)0.0269 (7)0.0061 (5)−0.0004 (6)−0.0016 (5)
C30.0258 (7)0.0238 (7)0.0294 (7)0.0016 (5)0.0045 (6)0.0065 (5)
C40.0275 (7)0.0174 (6)0.0238 (7)0.0009 (5)−0.0016 (5)−0.0051 (5)
C50.0326 (7)0.0241 (7)0.0246 (7)−0.0079 (6)0.0028 (6)0.0021 (5)
C60.0297 (7)0.0230 (7)0.0245 (7)0.0008 (5)−0.0093 (6)0.0024 (5)
N10.0259 (6)0.0135 (5)0.0216 (5)0.0013 (4)−0.0040 (4)0.0035 (4)
N20.0315 (6)0.0164 (5)0.0236 (6)−0.0032 (4)−0.0034 (5)−0.0009 (4)
N30.0254 (6)0.0204 (6)0.0267 (6)0.0041 (4)−0.0007 (5)0.0032 (4)
N40.0308 (6)0.0209 (6)0.0191 (5)−0.0019 (5)−0.0022 (4)−0.0016 (4)
C70.0189 (6)0.0172 (6)0.0160 (6)0.0009 (5)−0.0015 (4)0.0007 (4)
C80.0200 (6)0.0152 (6)0.0185 (6)−0.0005 (5)−0.0028 (5)0.0013 (4)
C90.0195 (6)0.0144 (6)0.0173 (5)−0.0013 (4)−0.0021 (4)0.0004 (4)
C100.0188 (6)0.0165 (6)0.0175 (6)−0.0002 (5)−0.0037 (4)0.0005 (4)
O10.0167 (4)0.0185 (5)0.0284 (5)0.0017 (3)0.0000 (4)0.0021 (4)
O20.0241 (5)0.0155 (5)0.0428 (6)−0.0015 (4)−0.0049 (4)0.0005 (4)
O30.0168 (4)0.0175 (5)0.0307 (5)0.0012 (3)−0.0020 (4)0.0028 (4)
O40.0253 (5)0.0167 (5)0.0484 (7)−0.0031 (4)−0.0018 (4)0.0038 (4)
C1—N21.4442 (17)C5—H5A0.99
C1—N11.5139 (17)C5—H5B0.99
C1—H1A0.99C6—N41.4691 (19)
C1—H1B0.99C6—N31.4727 (18)
C2—N21.4654 (19)C6—H6A0.99
C2—N31.4695 (18)C6—H6B0.99
C2—H2A0.99N1—H10.845 (19)
C2—H2B0.99C7—O21.2320 (15)
C3—N31.4435 (17)C7—O11.2821 (15)
C3—N11.5105 (17)C7—C81.4971 (17)
C3—H3A0.99C8—C91.3161 (17)
C3—H3B0.99C8—H80.95
C4—N41.4451 (17)C9—C101.4889 (17)
C4—N11.5179 (17)C9—H90.95
C4—H4A0.99C10—O41.2179 (16)
C4—H4B0.99C10—O31.3081 (15)
C5—N41.4715 (18)O3—H31.034 (18)
C5—N21.4717 (18)
N2—C1—N1109.36 (10)N3—C6—H6A109.2
N2—C1—H1A109.8N4—C6—H6B109.2
N1—C1—H1A109.8N3—C6—H6B109.2
N2—C1—H1B109.8H6A—C6—H6B107.9
N1—C1—H1B109.8C3—N1—C1109.07 (11)
H1A—C1—H1B108.3C3—N1—C4108.88 (10)
N2—C2—N3112.14 (11)C1—N1—C4108.65 (10)
N2—C2—H2A109.2C3—N1—H1109.9 (12)
N3—C2—H2A109.2C1—N1—H1113.1 (12)
N2—C2—H2B109.2C4—N1—H1107.1 (12)
N3—C2—H2B109.2C1—N2—C2109.24 (11)
H2A—C2—H2B107.9C1—N2—C5109.06 (11)
N3—C3—N1109.42 (11)C2—N2—C5108.26 (11)
N3—C3—H3A109.8C3—N3—C2109.00 (11)
N1—C3—H3A109.8C3—N3—C6109.07 (11)
N3—C3—H3B109.8C2—N3—C6108.38 (11)
N1—C3—H3B109.8C4—N4—C6108.59 (11)
H3A—C3—H3B108.2C4—N4—C5108.84 (10)
N4—C4—N1109.76 (10)C6—N4—C5108.47 (11)
N4—C4—H4A109.7O2—C7—O1123.81 (12)
N1—C4—H4A109.7O2—C7—C8119.76 (11)
N4—C4—H4B109.7O1—C7—C8116.43 (11)
N1—C4—H4B109.7C9—C8—C7122.51 (12)
H4A—C4—H4B108.2C9—C8—H8118.7
N4—C5—N2112.09 (11)C7—C8—H8118.7
N4—C5—H5A109.2C8—C9—C10122.25 (12)
N2—C5—H5A109.2C8—C9—H9118.9
N4—C5—H5B109.2C10—C9—H9118.9
N2—C5—H5B109.2O4—C10—O3121.80 (11)
H5A—C5—H5B107.9O4—C10—C9122.28 (12)
N4—C6—N3112.10 (11)O3—C10—C9115.92 (11)
N4—C6—H6A109.2C10—O3—H3112.0 (9)
N3—C3—N1—C159.36 (14)N2—C2—N3—C6−58.33 (14)
N3—C3—N1—C4−59.05 (14)N4—C6—N3—C3−60.71 (15)
N2—C1—N1—C3−59.07 (14)N4—C6—N3—C257.83 (14)
N2—C1—N1—C459.49 (14)N1—C4—N4—C6−59.03 (13)
N4—C4—N1—C359.28 (13)N1—C4—N4—C558.87 (14)
N4—C4—N1—C1−59.39 (13)N3—C6—N4—C460.45 (14)
N1—C1—N2—C258.69 (14)N3—C6—N4—C5−57.68 (14)
N1—C1—N2—C5−59.46 (14)N2—C5—N4—C4−60.05 (15)
N3—C2—N2—C1−60.15 (14)N2—C5—N4—C657.93 (14)
N3—C2—N2—C558.50 (14)O2—C7—C8—C9−3.04 (19)
N4—C5—N2—C160.51 (15)O1—C7—C8—C9177.28 (11)
N4—C5—N2—C2−58.25 (15)C7—C8—C9—C10179.56 (11)
N1—C3—N3—C2−59.05 (14)C8—C9—C10—O4−6.5 (2)
N1—C3—N3—C659.11 (14)C8—C9—C10—O3173.79 (11)
N2—C2—N3—C360.25 (14)
D—H···AD—HH···AD···AD—H···A
N1—H1···O10.845 (19)2.094 (19)2.8704 (14)153 (2)
O3—H3···O1i1.034 (18)1.458 (18)2.4877 (13)174 (2)
C1—H1A···O3ii0.992.463.2708 (16)138
C3—H3B···O4iii0.992.553.4629 (18)154
C4—H4B···O4iv0.992.483.3668 (17)149
C6—H6A···O4iv0.992.433.3352 (18)152
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1⋯O10.845 (19)2.094 (19)2.8704 (14)153 (2)
O3—H3⋯O1i1.034 (18)1.458 (18)2.4877 (13)174 (2)
C1—H1A⋯O3ii0.992.463.2708 (16)138
C3—H3B⋯O4iii0.992.553.4629 (18)154
C4—H4B⋯O4iv0.992.483.3668 (17)149
C6—H6A⋯O4iv0.992.433.3352 (18)152

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

  3 in total

1.  Salts of maleic and fumaric acids with organic polyamines: comparison of isomeric acids as building blocks in supramolecular chemistry.

Authors:  Katharine F Bowes; George Ferguson; Alan J Lough; Christopher Glidewell
Journal:  Acta Crystallogr B       Date:  2003-01-28

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  3 in total

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