| Literature DB >> 21522714 |
Abstract
THE CRYSTAL STRUCTURE OF THE TITLE COMPOUND [SYSTEMATIC NAME: 3,5,7-triaza-1-azoniatricyclo-[3.3.1.1(3Entities:
Year: 2010 PMID: 21522714 PMCID: PMC3050185 DOI: 10.1107/S1600536810052700
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C6H13N4+·C4H3O4− | |
| Monoclinic, | Mo |
| Hall symbol: -P 2ybc | Cell parameters from 4463 reflections |
| θ = 2.2–28.3° | |
| µ = 0.12 mm−1 | |
| β = 95.930 (2)° | Block, colourless |
| 0.4 × 0.26 × 0.1 mm | |
| Bruker APEXII CCD area-detector diffractometer | 2263 reflections with |
| ω scans | |
| Absorption correction: integration ( | θmax = 28.0°, θmin = 2.2° |
| 12032 measured reflections | |
| 2733 independent reflections |
| Refinement on | 0 restraints |
| Least-squares matrix: full | H atoms treated by a mixture of independent and constrained refinement |
| (Δ/σ)max = 0.001 | |
| Δρmax = 0.36 e Å−3 | |
| 2733 reflections | Δρmin = −0.26 e Å−3 |
| 169 parameters |
| Experimental. Numerical integration absorption corrections based on indexed crystal faces were
applied using the |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| C1 | 0.5255 (2) | 0.82554 (8) | 0.61723 (12) | 0.0247 (3) | |
| H1A | 0.5118 | 0.8385 | 0.7024 | 0.03* | |
| H1B | 0.6756 | 0.81 | 0.6098 | 0.03* | |
| C2 | 0.2451 (2) | 0.91915 (8) | 0.55450 (13) | 0.0272 (3) | |
| H2A | 0.207 | 0.9693 | 0.5057 | 0.033* | |
| H2B | 0.2281 | 0.9326 | 0.6391 | 0.033* | |
| C3 | 0.1515 (2) | 0.77886 (9) | 0.58785 (13) | 0.0262 (3) | |
| H3A | 0.0546 | 0.7325 | 0.5615 | 0.031* | |
| H3B | 0.1334 | 0.7915 | 0.6726 | 0.031* | |
| C4 | 0.4040 (2) | 0.73544 (8) | 0.44620 (12) | 0.0232 (3) | |
| H4A | 0.5531 | 0.7191 | 0.4376 | 0.028* | |
| H4B | 0.3097 | 0.6886 | 0.4182 | 0.028* | |
| C5 | 0.4895 (2) | 0.87723 (9) | 0.41791 (12) | 0.0271 (3) | |
| H5A | 0.4544 | 0.927 | 0.3678 | 0.033* | |
| H5B | 0.6394 | 0.8619 | 0.4096 | 0.033* | |
| C6 | 0.1277 (2) | 0.83150 (9) | 0.38914 (12) | 0.0266 (3) | |
| H6A | 0.0318 | 0.7851 | 0.3616 | 0.032* | |
| H6B | 0.087 | 0.8805 | 0.3384 | 0.032* | |
| N1 | 0.37969 (18) | 0.75391 (7) | 0.57675 (10) | 0.0208 (3) | |
| H1 | 0.409 (3) | 0.7097 (12) | 0.6156 (16) | 0.031* | |
| N2 | 0.46828 (19) | 0.89757 (7) | 0.54400 (10) | 0.0243 (3) | |
| N3 | 0.09872 (18) | 0.85121 (7) | 0.51461 (10) | 0.0244 (3) | |
| N4 | 0.34884 (19) | 0.80830 (7) | 0.37423 (10) | 0.0239 (3) | |
| C7 | 0.6729 (2) | 0.58907 (8) | 0.63638 (11) | 0.0176 (3) | |
| C8 | 0.7983 (2) | 0.50985 (8) | 0.64094 (11) | 0.0182 (3) | |
| H8 | 0.7237 | 0.4585 | 0.6406 | 0.022* | |
| C9 | 1.00774 (19) | 0.50863 (8) | 0.64536 (11) | 0.0173 (3) | |
| H9 | 1.0825 | 0.5599 | 0.6451 | 0.021* | |
| C10 | 1.1315 (2) | 0.42962 (8) | 0.65074 (11) | 0.0180 (3) | |
| O1 | 0.46931 (14) | 0.58179 (6) | 0.62743 (8) | 0.0214 (2) | |
| O2 | 0.76697 (15) | 0.65634 (6) | 0.64178 (10) | 0.0281 (3) | |
| O3 | 1.33649 (14) | 0.43696 (6) | 0.64341 (9) | 0.0220 (2) | |
| H3 | 1.382 (3) | 0.4983 (12) | 0.6347 (15) | 0.033* | |
| O4 | 1.04798 (15) | 0.36217 (6) | 0.66187 (10) | 0.0305 (3) |
| C1 | 0.0283 (7) | 0.0205 (7) | 0.0229 (6) | −0.0018 (5) | −0.0083 (5) | −0.0022 (5) |
| C2 | 0.0381 (8) | 0.0157 (6) | 0.0269 (7) | 0.0061 (5) | −0.0004 (6) | −0.0016 (5) |
| C3 | 0.0258 (7) | 0.0238 (7) | 0.0294 (7) | 0.0016 (5) | 0.0045 (6) | 0.0065 (5) |
| C4 | 0.0275 (7) | 0.0174 (6) | 0.0238 (7) | 0.0009 (5) | −0.0016 (5) | −0.0051 (5) |
| C5 | 0.0326 (7) | 0.0241 (7) | 0.0246 (7) | −0.0079 (6) | 0.0028 (6) | 0.0021 (5) |
| C6 | 0.0297 (7) | 0.0230 (7) | 0.0245 (7) | 0.0008 (5) | −0.0093 (6) | 0.0024 (5) |
| N1 | 0.0259 (6) | 0.0135 (5) | 0.0216 (5) | 0.0013 (4) | −0.0040 (4) | 0.0035 (4) |
| N2 | 0.0315 (6) | 0.0164 (5) | 0.0236 (6) | −0.0032 (4) | −0.0034 (5) | −0.0009 (4) |
| N3 | 0.0254 (6) | 0.0204 (6) | 0.0267 (6) | 0.0041 (4) | −0.0007 (5) | 0.0032 (4) |
| N4 | 0.0308 (6) | 0.0209 (6) | 0.0191 (5) | −0.0019 (5) | −0.0022 (4) | −0.0016 (4) |
| C7 | 0.0189 (6) | 0.0172 (6) | 0.0160 (6) | 0.0009 (5) | −0.0015 (4) | 0.0007 (4) |
| C8 | 0.0200 (6) | 0.0152 (6) | 0.0185 (6) | −0.0005 (5) | −0.0028 (5) | 0.0013 (4) |
| C9 | 0.0195 (6) | 0.0144 (6) | 0.0173 (5) | −0.0013 (4) | −0.0021 (4) | 0.0004 (4) |
| C10 | 0.0188 (6) | 0.0165 (6) | 0.0175 (6) | −0.0002 (5) | −0.0037 (4) | 0.0005 (4) |
| O1 | 0.0167 (4) | 0.0185 (5) | 0.0284 (5) | 0.0017 (3) | 0.0000 (4) | 0.0021 (4) |
| O2 | 0.0241 (5) | 0.0155 (5) | 0.0428 (6) | −0.0015 (4) | −0.0049 (4) | 0.0005 (4) |
| O3 | 0.0168 (4) | 0.0175 (5) | 0.0307 (5) | 0.0012 (3) | −0.0020 (4) | 0.0028 (4) |
| O4 | 0.0253 (5) | 0.0167 (5) | 0.0484 (7) | −0.0031 (4) | −0.0018 (4) | 0.0038 (4) |
| C1—N2 | 1.4442 (17) | C5—H5A | 0.99 |
| C1—N1 | 1.5139 (17) | C5—H5B | 0.99 |
| C1—H1A | 0.99 | C6—N4 | 1.4691 (19) |
| C1—H1B | 0.99 | C6—N3 | 1.4727 (18) |
| C2—N2 | 1.4654 (19) | C6—H6A | 0.99 |
| C2—N3 | 1.4695 (18) | C6—H6B | 0.99 |
| C2—H2A | 0.99 | N1—H1 | 0.845 (19) |
| C2—H2B | 0.99 | C7—O2 | 1.2320 (15) |
| C3—N3 | 1.4435 (17) | C7—O1 | 1.2821 (15) |
| C3—N1 | 1.5105 (17) | C7—C8 | 1.4971 (17) |
| C3—H3A | 0.99 | C8—C9 | 1.3161 (17) |
| C3—H3B | 0.99 | C8—H8 | 0.95 |
| C4—N4 | 1.4451 (17) | C9—C10 | 1.4889 (17) |
| C4—N1 | 1.5179 (17) | C9—H9 | 0.95 |
| C4—H4A | 0.99 | C10—O4 | 1.2179 (16) |
| C4—H4B | 0.99 | C10—O3 | 1.3081 (15) |
| C5—N4 | 1.4715 (18) | O3—H3 | 1.034 (18) |
| C5—N2 | 1.4717 (18) | ||
| N2—C1—N1 | 109.36 (10) | N3—C6—H6A | 109.2 |
| N2—C1—H1A | 109.8 | N4—C6—H6B | 109.2 |
| N1—C1—H1A | 109.8 | N3—C6—H6B | 109.2 |
| N2—C1—H1B | 109.8 | H6A—C6—H6B | 107.9 |
| N1—C1—H1B | 109.8 | C3—N1—C1 | 109.07 (11) |
| H1A—C1—H1B | 108.3 | C3—N1—C4 | 108.88 (10) |
| N2—C2—N3 | 112.14 (11) | C1—N1—C4 | 108.65 (10) |
| N2—C2—H2A | 109.2 | C3—N1—H1 | 109.9 (12) |
| N3—C2—H2A | 109.2 | C1—N1—H1 | 113.1 (12) |
| N2—C2—H2B | 109.2 | C4—N1—H1 | 107.1 (12) |
| N3—C2—H2B | 109.2 | C1—N2—C2 | 109.24 (11) |
| H2A—C2—H2B | 107.9 | C1—N2—C5 | 109.06 (11) |
| N3—C3—N1 | 109.42 (11) | C2—N2—C5 | 108.26 (11) |
| N3—C3—H3A | 109.8 | C3—N3—C2 | 109.00 (11) |
| N1—C3—H3A | 109.8 | C3—N3—C6 | 109.07 (11) |
| N3—C3—H3B | 109.8 | C2—N3—C6 | 108.38 (11) |
| N1—C3—H3B | 109.8 | C4—N4—C6 | 108.59 (11) |
| H3A—C3—H3B | 108.2 | C4—N4—C5 | 108.84 (10) |
| N4—C4—N1 | 109.76 (10) | C6—N4—C5 | 108.47 (11) |
| N4—C4—H4A | 109.7 | O2—C7—O1 | 123.81 (12) |
| N1—C4—H4A | 109.7 | O2—C7—C8 | 119.76 (11) |
| N4—C4—H4B | 109.7 | O1—C7—C8 | 116.43 (11) |
| N1—C4—H4B | 109.7 | C9—C8—C7 | 122.51 (12) |
| H4A—C4—H4B | 108.2 | C9—C8—H8 | 118.7 |
| N4—C5—N2 | 112.09 (11) | C7—C8—H8 | 118.7 |
| N4—C5—H5A | 109.2 | C8—C9—C10 | 122.25 (12) |
| N2—C5—H5A | 109.2 | C8—C9—H9 | 118.9 |
| N4—C5—H5B | 109.2 | C10—C9—H9 | 118.9 |
| N2—C5—H5B | 109.2 | O4—C10—O3 | 121.80 (11) |
| H5A—C5—H5B | 107.9 | O4—C10—C9 | 122.28 (12) |
| N4—C6—N3 | 112.10 (11) | O3—C10—C9 | 115.92 (11) |
| N4—C6—H6A | 109.2 | C10—O3—H3 | 112.0 (9) |
| N3—C3—N1—C1 | 59.36 (14) | N2—C2—N3—C6 | −58.33 (14) |
| N3—C3—N1—C4 | −59.05 (14) | N4—C6—N3—C3 | −60.71 (15) |
| N2—C1—N1—C3 | −59.07 (14) | N4—C6—N3—C2 | 57.83 (14) |
| N2—C1—N1—C4 | 59.49 (14) | N1—C4—N4—C6 | −59.03 (13) |
| N4—C4—N1—C3 | 59.28 (13) | N1—C4—N4—C5 | 58.87 (14) |
| N4—C4—N1—C1 | −59.39 (13) | N3—C6—N4—C4 | 60.45 (14) |
| N1—C1—N2—C2 | 58.69 (14) | N3—C6—N4—C5 | −57.68 (14) |
| N1—C1—N2—C5 | −59.46 (14) | N2—C5—N4—C4 | −60.05 (15) |
| N3—C2—N2—C1 | −60.15 (14) | N2—C5—N4—C6 | 57.93 (14) |
| N3—C2—N2—C5 | 58.50 (14) | O2—C7—C8—C9 | −3.04 (19) |
| N4—C5—N2—C1 | 60.51 (15) | O1—C7—C8—C9 | 177.28 (11) |
| N4—C5—N2—C2 | −58.25 (15) | C7—C8—C9—C10 | 179.56 (11) |
| N1—C3—N3—C2 | −59.05 (14) | C8—C9—C10—O4 | −6.5 (2) |
| N1—C3—N3—C6 | 59.11 (14) | C8—C9—C10—O3 | 173.79 (11) |
| N2—C2—N3—C3 | 60.25 (14) |
| H··· | ||||
| N1—H1···O1 | 0.845 (19) | 2.094 (19) | 2.8704 (14) | 153 (2) |
| O3—H3···O1i | 1.034 (18) | 1.458 (18) | 2.4877 (13) | 174 (2) |
| C1—H1A···O3ii | 0.99 | 2.46 | 3.2708 (16) | 138 |
| C3—H3B···O4iii | 0.99 | 2.55 | 3.4629 (18) | 154 |
| C4—H4B···O4iv | 0.99 | 2.48 | 3.3668 (17) | 149 |
| C6—H6A···O4iv | 0.99 | 2.43 | 3.3352 (18) | 152 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N1—H1⋯O1 | 0.845 (19) | 2.094 (19) | 2.8704 (14) | 153 (2) |
| O3—H3⋯O1i | 1.034 (18) | 1.458 (18) | 2.4877 (13) | 174 (2) |
| C1—H1 | 0.99 | 2.46 | 3.2708 (16) | 138 |
| C3—H3 | 0.99 | 2.55 | 3.4629 (18) | 154 |
| C4—H4 | 0.99 | 2.48 | 3.3668 (17) | 149 |
| C6—H6 | 0.99 | 2.43 | 3.3352 (18) | 152 |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .