Literature DB >> 21522708

Naphthalene-2,6-dicarb-oxy-lic acid-1-methyl-pyrrolidin-2-one (1/2).

Bianhua Wu, Ge Peng, Youwei Cheng, Xi Li, Jiyong Liu.   

Abstract

The asymmetric unit of the title compound, C(12)H(8)O(4)·2C(5)H(9)NO, contains one half-mol-ecule of naphthalene-2,6-dicarb-oxy-lic acid (NDA) and one mol-ecule of 1-methyl-pyrrolidin-2-one (NMP): the NDA molecules lie on the crystallographic twofold rotation axes. In the crystal, the components are linked by strong O-H⋯O hydrogen bonds and C-H⋯O inter-actions.

Entities:  

Year:  2010        PMID: 21522708      PMCID: PMC3050321          DOI: 10.1107/S1600536810052396

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the crystal structure of naphthalene-2,6-dicarb­oxy­lic acid (NDA), see: Kaduk & Golab (1999 ▶). For the crystal structure of N-methyl-2-Pyrrolidone (NMP), see: Müller et al. (1996 ▶). For the purification of NDA, see: Nagase et al. (2004 ▶). For related structures, see: Guo et al. (2009 ▶); Dale & Elsegood (2004 ▶).

Experimental

Crystal data

C12H8O4·2C5H9NO M = 414.45 Orthorhombic, a = 19.7306 (11) Å b = 28.7632 (19) Å c = 7.1906 (4) Å V = 4080.8 (4) Å3 Z = 8 Mo Kα radiation μ = 0.10 mm−1 T = 120 K 0.30 × 0.11 × 0.10 mm

Data collection

Oxford Diffraction Xcalibur Atlas Gemini ultra diffractometer Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2009 ▶) T min = 0.987, T max = 0.990 3255 measured reflections 1017 independent reflections 847 reflections with I > 2σ(I) R int = 0.037

Refinement

R[F 2 > 2σ(F 2)] = 0.037 wR(F 2) = 0.087 S = 1.05 1017 reflections 138 parameters 1 restraint H-atom parameters constrained Δρmax = 0.17 e Å−3 Δρmin = −0.20 e Å−3 Data collection: CrysAlis PRO (Oxford Diffraction, 2009 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 12008); molecular graphics: OLEX2 (Dolomanov et al., 2009 ▶); software used to prepare material for publication: OLEX2. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810052396/su2234sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810052396/su2234Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C12H8O4·2C5H9NOF(000) = 1760
Mr = 414.45Dx = 1.349 Mg m3
Orthorhombic, Fdd2Mo Kα radiation, λ = 0.71073 Å
Hall symbol: F 2 -2dCell parameters from 1127 reflections
a = 19.7306 (11) Åθ = 3.1–29.2°
b = 28.7632 (19) ŵ = 0.10 mm1
c = 7.1906 (4) ÅT = 120 K
V = 4080.8 (4) Å3Needle, colourless
Z = 80.30 × 0.11 × 0.10 mm
Oxford Diffraction Xcalibur Atlas Gemini ultra diffractometer1017 independent reflections
Radiation source: fine-focus sealed tube847 reflections with I > 2σ(I)
graphiteRint = 0.037
Detector resolution: 10.3592 pixels mm-1θmax = 25.4°, θmin = 3.1°
ω scansh = −23→19
Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2009)k = −22→34
Tmin = 0.987, Tmax = 0.990l = −8→7
3255 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.037Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.087H-atom parameters constrained
S = 1.05w = 1/[σ2(Fo2) + (0.0405P)2 + 1.8717P] where P = (Fo2 + 2Fc2)/3
1017 reflections(Δ/σ)max < 0.001
138 parametersΔρmax = 0.17 e Å3
1 restraintΔρmin = −0.20 e Å3
Experimental. Empirical absorption correction using spherical harmonics, implemented in SCALE3 ABSPACK scaling algorithm; CrysAlis PRO (Oxford Diffraction, 2009).
Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All su's are estimated from the variances of the (full) variance-covariance matrix. The cell esds are taken into account in the estimation of distances, angles and torsion angles
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.24703 (10)0.09264 (7)0.7871 (3)0.0278 (7)
O20.13547 (10)0.10088 (8)0.7582 (4)0.0385 (8)
C10.27857 (13)0.23501 (10)0.7441 (4)0.0168 (8)
C20.26776 (13)0.18651 (10)0.7497 (4)0.0180 (8)
C30.20359 (13)0.16856 (10)0.7495 (4)0.0177 (8)
C40.14695 (13)0.19829 (10)0.7411 (4)0.0200 (9)
C50.15563 (13)0.24549 (10)0.7410 (4)0.0191 (9)
C60.19144 (14)0.11756 (10)0.7638 (4)0.0200 (8)
O30.23717 (10)0.00444 (7)0.8202 (3)0.0252 (7)
N10.18459 (12)−0.06402 (9)0.8830 (4)0.0223 (7)
C70.18914 (15)−0.01786 (11)0.8877 (4)0.0219 (9)
C80.12795 (15)0.00109 (11)0.9868 (5)0.0252 (9)
C90.07849 (14)−0.03970 (11)0.9918 (5)0.0259 (10)
C100.12448 (14)−0.08267 (11)0.9734 (5)0.0256 (10)
C110.23599 (16)−0.09402 (11)0.8060 (5)0.0294 (10)
H10.236800.065200.800000.0420*
H20.304800.166500.753700.0220*
H40.103500.185800.735700.0240*
H50.118000.264900.738900.0230*
H8A0.108800.027200.919400.0300*
H8B0.139500.011101.111600.0300*
H9A0.04650−0.038000.889500.0310*
H9B0.05360−0.040301.108100.0310*
H10A0.10330−0.106500.897600.0310*
H10B0.13540−0.095601.094300.0310*
H11A0.21610−0.113800.713500.0440*
H11B0.27090−0.075500.750000.0440*
H11C0.25520−0.112700.903200.0440*
U11U22U33U12U13U23
O10.0248 (11)0.0165 (11)0.0421 (14)−0.0012 (9)0.0016 (10)0.0040 (11)
O20.0264 (12)0.0216 (12)0.0675 (17)−0.0061 (10)−0.0131 (13)0.0029 (13)
C10.0178 (13)0.0197 (15)0.0130 (13)−0.0010 (12)0.0015 (13)0.0011 (14)
C20.0217 (14)0.0186 (15)0.0138 (14)0.0029 (12)0.0002 (13)−0.0012 (14)
C30.0199 (15)0.0193 (15)0.0138 (14)−0.0001 (13)−0.0024 (12)−0.0009 (14)
C40.0165 (14)0.0266 (18)0.0170 (14)−0.0037 (13)−0.0015 (14)0.0019 (14)
C50.0178 (14)0.0213 (17)0.0183 (14)0.0027 (12)−0.0011 (13)0.0007 (14)
C60.0214 (14)0.0187 (15)0.0200 (15)−0.0002 (14)−0.0025 (13)0.0012 (14)
O30.0240 (12)0.0195 (11)0.0322 (13)−0.0027 (10)0.0047 (10)0.0025 (11)
N10.0213 (12)0.0209 (13)0.0247 (13)0.0002 (12)0.0021 (11)0.0037 (12)
C70.0235 (15)0.0213 (16)0.0209 (15)0.0002 (15)−0.0058 (13)0.0006 (14)
C80.0256 (15)0.0263 (17)0.0238 (16)0.0049 (14)0.0001 (13)−0.0018 (17)
C90.0229 (15)0.0301 (19)0.0246 (16)0.0012 (14)0.0011 (15)0.0034 (16)
C100.0250 (16)0.0281 (18)0.0237 (17)−0.0052 (15)0.0004 (13)0.0065 (15)
C110.0313 (18)0.0259 (18)0.0309 (17)0.0064 (15)0.0019 (15)0.0017 (16)
O1—C61.321 (3)C4—H40.9300
O2—C61.205 (3)C5—H50.9300
O1—H10.8200C7—C81.504 (4)
O3—C71.243 (4)C8—C91.527 (4)
N1—C71.331 (4)C9—C101.539 (4)
N1—C101.455 (4)C8—H8A0.9700
N1—C111.442 (4)C8—H8B0.9700
C1—C5i1.414 (4)C9—H9A0.9700
C1—C1i1.419 (4)C9—H9B0.9700
C1—C21.412 (4)C10—H10A0.9700
C2—C31.367 (4)C10—H10B0.9700
C3—C61.490 (4)C11—H11A0.9600
C3—C41.409 (4)C11—H11B0.9600
C4—C51.368 (4)C11—H11C0.9600
C2—H20.9300
C6—O1—H1109.00C7—C8—C9104.2 (3)
C10—N1—C11121.6 (3)C8—C9—C10103.8 (2)
C7—N1—C10114.3 (2)N1—C10—C9102.9 (2)
C7—N1—C11124.0 (3)C7—C8—H8A111.00
C2—C1—C5i122.1 (2)C7—C8—H8B111.00
C1i—C1—C5i119.2 (3)C9—C8—H8A111.00
C1i—C1—C2118.7 (2)C9—C8—H8B111.00
C1—C2—C3120.9 (2)H8A—C8—H8B109.00
C4—C3—C6118.2 (2)C8—C9—H9A111.00
C2—C3—C6121.4 (2)C8—C9—H9B111.00
C2—C3—C4120.4 (3)C10—C9—H9A111.00
C3—C4—C5120.2 (2)C10—C9—H9B111.00
C1i—C5—C4120.6 (2)H9A—C9—H9B109.00
O1—C6—O2123.3 (3)N1—C10—H10A111.00
O2—C6—C3122.5 (3)N1—C10—H10B111.00
O1—C6—C3114.2 (2)C9—C10—H10A111.00
C3—C2—H2120.00C9—C10—H10B111.00
C1—C2—H2120.00H10A—C10—H10B109.00
C3—C4—H4120.00N1—C11—H11A109.00
C5—C4—H4120.00N1—C11—H11B110.00
C4—C5—H5120.00N1—C11—H11C109.00
C1i—C5—H5120.00H11A—C11—H11B109.00
O3—C7—N1123.8 (3)H11A—C11—H11C110.00
O3—C7—C8127.6 (3)H11B—C11—H11C109.00
N1—C7—C8108.6 (3)
C10—N1—C7—O3179.0 (3)C1—C2—C3—C40.9 (4)
C10—N1—C7—C8−0.7 (4)C2—C3—C6—O13.7 (4)
C11—N1—C7—O32.7 (5)C2—C3—C4—C5−2.8 (4)
C11—N1—C7—C8−177.1 (3)C6—C3—C4—C5175.4 (3)
C7—N1—C10—C915.8 (4)C4—C3—C6—O24.1 (4)
C11—N1—C10—C9−167.8 (3)C2—C3—C6—O2−177.7 (3)
C2—C1—C5i—C4i−178.1 (3)C4—C3—C6—O1−174.5 (3)
C2—C1—C1i—C5−2.9 (4)C3—C4—C5—C1i1.8 (4)
C1i—C1—C2—C31.9 (4)O3—C7—C8—C9165.4 (3)
C5i—C1—C2—C3−178.9 (3)N1—C7—C8—C9−14.9 (3)
C2—C1—C1i—C2i176.3 (3)C7—C8—C9—C1023.5 (3)
C5i—C1—C1i—C5177.9 (3)C8—C9—C10—N1−23.5 (3)
C1—C2—C3—C6−177.3 (3)
D—H···AD—HH···AD···AD—H···A
O1—H1···O30.821.752.556 (3)165
C2—H2···O2ii0.932.483.163 (4)131
C8—H8A···O20.972.473.311 (4)145
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1—H1⋯O30.821.752.556 (3)165
C2—H2⋯O2i0.932.483.163 (4)131
C8—H8A⋯O20.972.473.311 (4)145

Symmetry code: (i) .

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