| Literature DB >> 21522705 |
Jiaji Liu1, Xiaoliang Tang, Zhengdan Lu, Guolin Zhang, Weisheng Liu.
Abstract
In the title compound, C(36)H(40)N(5)O(6) (+)·NO(3) (-)·2C(2)H(5)OH, the nitrate anion is disordered over the two orientations of equal occupancy while the solvent mol-ecule reveals large displacement parameters. The cation is formed by protonation of the N atom of a secondary amine in the middle of the flexible chain and the whole compound has crystallographically imposed C-2 symmetry with the crystallographic b axis. An O atom of the nitrate anion links the acidic H atoms of the cation via N-H⋯O hydrogen bonding. In addition, neighbouring cations are connected by inter-molecular N-H⋯O hydrogen bonds and π-π inter-actions between the benzamide groups of the cations [centroid-centroid distance = 4.000 (3) Å], forming a chain along [001]. The ethanol solvent mol-ecules are arranged on the side of the chain through O-H⋯O hydrogen bonds.Entities:
Year: 2010 PMID: 21522705 PMCID: PMC3050242 DOI: 10.1107/S1600536810052670
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C36H40N5O6+·NO3−·2C2H6O | |
| Monoclinic, | Mo |
| Hall symbol: C2y | Cell parameters from 1019 reflections |
| θ = 2.5–20.9° | |
| µ = 0.09 mm−1 | |
| β = 108.04 (3)° | Block, colourless |
| 0.22 × 0.18 × 0.17 mm | |
| Bruker SMART CCD area-detector diffractometer | 1995 independent reflections |
| Radiation source: fine-focus sealed tube | 1334 reflections with |
| graphite | |
| φ and ω scans | θmax = 25.5°, θmin = 2.2° |
| Absorption correction: multi-scan ( | |
| 4901 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 1995 reflections | (Δ/σ)max < 0.001 |
| 277 parameters | Δρmax = 0.26 e Å−3 |
| 45 restraints | Δρmin = −0.32 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| Occ. (<1) | |||||
| C1 | 0.1027 (3) | 0.7751 (5) | 0.3251 (4) | 0.0729 (14) | |
| H1 | 0.0513 | 0.8071 | 0.2823 | 0.088* | |
| C2 | 0.1500 (4) | 0.8244 (5) | 0.4399 (4) | 0.0853 (17) | |
| H2 | 0.1299 | 0.8878 | 0.4742 | 0.102* | |
| C3 | 0.2259 (4) | 0.7777 (5) | 0.5003 (5) | 0.0903 (18) | |
| H3 | 0.2585 | 0.8102 | 0.5758 | 0.108* | |
| C4 | 0.2544 (4) | 0.6830 (6) | 0.4502 (5) | 0.0860 (17) | |
| H4 | 0.3060 | 0.6512 | 0.4923 | 0.103* | |
| C5 | 0.2075 (3) | 0.6351 (5) | 0.3391 (4) | 0.0723 (14) | |
| H5 | 0.2275 | 0.5708 | 0.3062 | 0.087* | |
| C6 | 0.1309 (3) | 0.6806 (4) | 0.2748 (4) | 0.0573 (11) | |
| C7 | 0.0779 (3) | 0.6306 (4) | 0.1506 (4) | 0.0614 (12) | |
| H7A | 0.0201 | 0.6396 | 0.1453 | 0.074* | |
| H7B | 0.0872 | 0.6762 | 0.0828 | 0.074* | |
| C8 | 0.0726 (2) | 0.4235 (4) | 0.1984 (3) | 0.0492 (11) | |
| C9 | 0.0862 (2) | 0.2966 (4) | 0.1713 (3) | 0.0477 (10) | |
| C10 | 0.0729 (3) | 0.2155 (4) | 0.2537 (4) | 0.0645 (13) | |
| H10 | 0.0561 | 0.2411 | 0.3210 | 0.077* | |
| C11 | 0.0839 (4) | 0.0971 (5) | 0.2393 (5) | 0.0802 (16) | |
| H11 | 0.0741 | 0.0441 | 0.2963 | 0.096* | |
| C12 | 0.1088 (4) | 0.0581 (5) | 0.1432 (5) | 0.0833 (16) | |
| H12 | 0.1161 | −0.0218 | 0.1338 | 0.100* | |
| C13 | 0.1236 (3) | 0.1374 (4) | 0.0576 (4) | 0.0739 (14) | |
| H13 | 0.1417 | 0.1108 | −0.0081 | 0.089* | |
| C14 | 0.1113 (2) | 0.2551 (4) | 0.0710 (3) | 0.0506 (11) | |
| C15 | 0.1448 (3) | 0.3013 (4) | −0.1168 (3) | 0.0582 (12) | |
| H15A | 0.1031 | 0.2491 | −0.1691 | 0.070* | |
| H15B | 0.1973 | 0.2602 | −0.0900 | 0.070* | |
| C16 | 0.1516 (3) | 0.4089 (4) | −0.1880 (4) | 0.0583 (12) | |
| C17 | 0.1515 (3) | 0.4860 (5) | −0.3908 (4) | 0.0755 (15) | |
| H17A | 0.1635 | 0.4531 | −0.4634 | 0.091* | |
| H17B | 0.1978 | 0.5355 | −0.3464 | 0.091* | |
| C18 | 0.0744 (3) | 0.5599 (4) | −0.4352 (4) | 0.0633 (12) | |
| H18A | 0.0655 | 0.5993 | −0.3635 | 0.076* | |
| H18B | 0.0820 | 0.6195 | −0.4927 | 0.076* | |
| C19 | 0.1576 (7) | 0.8011 (10) | 0.8043 (10) | 0.190 (4) | |
| H19A | 0.1167 | 0.7735 | 0.7280 | 0.227* | |
| H19B | 0.2120 | 0.7857 | 0.7965 | 0.227* | |
| C20 | 0.1476 (8) | 0.9286 (12) | 0.8154 (13) | 0.220 (5) | |
| H20A | 0.0967 | 0.9441 | 0.8332 | 0.330* | |
| H20B | 0.1462 | 0.9660 | 0.7377 | 0.330* | |
| H20C | 0.1932 | 0.9589 | 0.8825 | 0.330* | |
| N1 | 0.0936 (2) | 0.5070 (3) | 0.1313 (3) | 0.0555 (9) | |
| H1A | 0.1169 | 0.4881 | 0.0756 | 0.067* | |
| N2 | 0.1437 (2) | 0.3914 (4) | −0.3083 (3) | 0.0627 (10) | |
| H2A | 0.1336 | 0.3217 | −0.3385 | 0.075* | |
| N3 | 0.0000 | 0.4879 (5) | −0.5000 | 0.0538 (13) | |
| HN3 | −0.004 (2) | 0.437 (4) | −0.435 (4) | 0.061 (12)* | |
| N4 | 0.0000 | 0.1418 (5) | 0.5000 | 0.0692 (16) | |
| O1 | 0.04311 (19) | 0.4475 (3) | 0.2828 (3) | 0.0665 (9) | |
| O2 | 0.1223 (2) | 0.3375 (3) | −0.0115 (2) | 0.0659 (8) | |
| O3 | 0.1642 (2) | 0.5043 (4) | −0.1375 (3) | 0.0879 (12) | |
| O4 | 0.1490 (5) | 0.7383 (9) | 0.9064 (8) | 0.206 (3) | |
| H4A | 0.1549 | 0.6662 | 0.8924 | 0.247* | |
| O5 | −0.0303 (5) | 0.2373 (6) | 0.4705 (7) | 0.086 (3) | 0.50 |
| O6 | 0.0685 (4) | 0.1426 (7) | 0.5858 (8) | 0.100 (3) | 0.50 |
| O7 | −0.0314 (6) | 0.0489 (6) | 0.4703 (11) | 0.133 (4) | 0.50 |
| C1 | 0.106 (3) | 0.055 (3) | 0.059 (2) | 0.008 (3) | 0.028 (2) | 0.008 (2) |
| C2 | 0.161 (5) | 0.036 (2) | 0.068 (3) | −0.008 (3) | 0.049 (3) | −0.002 (2) |
| C3 | 0.118 (4) | 0.083 (4) | 0.061 (3) | −0.036 (3) | 0.016 (3) | 0.004 (3) |
| C4 | 0.084 (3) | 0.094 (4) | 0.073 (3) | −0.021 (3) | 0.013 (3) | 0.002 (3) |
| C5 | 0.083 (3) | 0.073 (3) | 0.062 (3) | −0.006 (3) | 0.025 (2) | −0.003 (2) |
| C6 | 0.084 (3) | 0.049 (2) | 0.0445 (18) | 0.001 (2) | 0.0277 (19) | 0.0087 (18) |
| C7 | 0.086 (3) | 0.052 (3) | 0.046 (2) | 0.005 (2) | 0.021 (2) | 0.0030 (19) |
| C8 | 0.056 (2) | 0.056 (3) | 0.0357 (17) | 0.001 (2) | 0.0152 (16) | −0.0003 (18) |
| C9 | 0.057 (2) | 0.053 (2) | 0.0344 (16) | −0.0033 (19) | 0.0158 (15) | 0.0026 (17) |
| C10 | 0.085 (3) | 0.066 (3) | 0.049 (2) | 0.008 (2) | 0.030 (2) | 0.013 (2) |
| C11 | 0.122 (4) | 0.068 (3) | 0.056 (2) | −0.004 (3) | 0.035 (3) | 0.013 (2) |
| C12 | 0.128 (4) | 0.052 (3) | 0.079 (3) | 0.000 (3) | 0.046 (3) | 0.011 (2) |
| C13 | 0.108 (3) | 0.063 (3) | 0.065 (2) | 0.002 (3) | 0.048 (2) | 0.003 (2) |
| C14 | 0.065 (2) | 0.050 (2) | 0.0426 (19) | −0.005 (2) | 0.0251 (17) | 0.0017 (18) |
| C15 | 0.082 (2) | 0.063 (3) | 0.0391 (17) | 0.005 (2) | 0.0330 (17) | −0.0049 (19) |
| C16 | 0.069 (2) | 0.066 (3) | 0.0455 (19) | −0.002 (2) | 0.0255 (18) | 0.004 (2) |
| C17 | 0.076 (2) | 0.107 (4) | 0.053 (2) | 0.004 (3) | 0.034 (2) | 0.019 (3) |
| C18 | 0.090 (3) | 0.055 (3) | 0.053 (2) | −0.015 (2) | 0.033 (2) | 0.003 (2) |
| C19 | 0.183 (6) | 0.205 (8) | 0.190 (7) | −0.004 (7) | 0.071 (6) | 0.009 (7) |
| C20 | 0.218 (7) | 0.219 (8) | 0.221 (8) | −0.005 (7) | 0.066 (6) | −0.043 (7) |
| N1 | 0.075 (2) | 0.054 (2) | 0.0423 (16) | 0.0008 (18) | 0.0244 (15) | 0.0025 (16) |
| N2 | 0.088 (2) | 0.067 (2) | 0.0447 (16) | 0.011 (2) | 0.0376 (15) | 0.0073 (17) |
| N3 | 0.078 (3) | 0.051 (3) | 0.038 (2) | 0.000 | 0.027 (2) | 0.000 |
| N4 | 0.072 (3) | 0.078 (4) | 0.069 (3) | 0.000 | 0.038 (3) | 0.000 |
| O1 | 0.0891 (18) | 0.070 (2) | 0.0545 (14) | −0.0011 (17) | 0.0420 (14) | −0.0032 (15) |
| O2 | 0.113 (2) | 0.0502 (18) | 0.0509 (13) | 0.0028 (16) | 0.0492 (14) | 0.0024 (13) |
| O3 | 0.125 (3) | 0.080 (2) | 0.0584 (17) | −0.033 (2) | 0.0280 (18) | −0.0035 (18) |
| O4 | 0.236 (6) | 0.214 (7) | 0.200 (5) | −0.015 (5) | 0.117 (5) | 0.006 (5) |
| O5 | 0.127 (7) | 0.065 (4) | 0.079 (5) | 0.017 (4) | 0.049 (5) | 0.018 (4) |
| O6 | 0.113 (5) | 0.063 (5) | 0.138 (7) | 0.013 (5) | 0.061 (5) | −0.002 (5) |
| O7 | 0.185 (11) | 0.070 (5) | 0.165 (8) | −0.055 (5) | 0.084 (7) | −0.062 (6) |
| C1—C6 | 1.367 (7) | C16—O3 | 1.214 (6) |
| C1—C2 | 1.402 (7) | C16—N2 | 1.322 (5) |
| C1—H1 | 0.9300 | C17—N2 | 1.452 (6) |
| C2—C3 | 1.365 (8) | C17—C18 | 1.506 (7) |
| C2—H2 | 0.9300 | C17—H17A | 0.9700 |
| C3—C4 | 1.371 (8) | C17—H17B | 0.9700 |
| C3—H3 | 0.9300 | C18—N3 | 1.493 (5) |
| C4—C5 | 1.364 (7) | C18—H18A | 0.9700 |
| C4—H4 | 0.9300 | C18—H18B | 0.9700 |
| C5—C6 | 1.378 (6) | C19—O4 | 1.392 (11) |
| C5—H5 | 0.9300 | C19—C20 | 1.475 (14) |
| C6—C7 | 1.512 (6) | C19—H19A | 0.9700 |
| C7—N1 | 1.464 (6) | C19—H19B | 0.9700 |
| C7—H7A | 0.9700 | C20—H20A | 0.9600 |
| C7—H7B | 0.9700 | C20—H20B | 0.9600 |
| C8—O1 | 1.226 (5) | C20—H20C | 0.9600 |
| C8—N1 | 1.327 (5) | N1—H1A | 0.8600 |
| C8—C9 | 1.511 (6) | N2—H2A | 0.8600 |
| C9—C10 | 1.372 (6) | N3—C18i | 1.493 (5) |
| C9—C14 | 1.398 (5) | N3—HN3 | 0.95 (4) |
| C10—C11 | 1.380 (8) | N4—O7ii | 1.186 (8) |
| C10—H10 | 0.9300 | N4—O7 | 1.186 (8) |
| C11—C12 | 1.344 (8) | N4—O5ii | 1.205 (8) |
| C11—H11 | 0.9300 | N4—O5 | 1.205 (8) |
| C12—C13 | 1.395 (7) | N4—O6 | 1.258 (7) |
| C12—H12 | 0.9300 | N4—O6ii | 1.258 (7) |
| C13—C14 | 1.374 (7) | O4—H4A | 0.8491 |
| C13—H13 | 0.9300 | O5—O5ii | 1.035 (14) |
| C14—O2 | 1.368 (5) | O5—O6ii | 1.316 (10) |
| C15—O2 | 1.406 (5) | O6—O7ii | 1.298 (12) |
| C15—C16 | 1.486 (6) | O6—O5ii | 1.316 (10) |
| C15—H15A | 0.9700 | O7—O7ii | 1.066 (18) |
| C15—H15B | 0.9700 | O7—O6ii | 1.298 (12) |
| C6—C1—C2 | 121.2 (5) | O2—C15—H15B | 110.3 |
| C6—C1—H1 | 119.4 | C16—C15—H15B | 110.3 |
| C2—C1—H1 | 119.4 | H15A—C15—H15B | 108.6 |
| C3—C2—C1 | 118.7 (5) | O3—C16—N2 | 123.7 (4) |
| C3—C2—H2 | 120.7 | O3—C16—C15 | 121.6 (4) |
| C1—C2—H2 | 120.7 | N2—C16—C15 | 114.8 (4) |
| C2—C3—C4 | 120.3 (5) | N2—C17—C18 | 112.6 (4) |
| C2—C3—H3 | 119.8 | N2—C17—H17A | 109.1 |
| C4—C3—H3 | 119.8 | C18—C17—H17A | 109.1 |
| C5—C4—C3 | 120.4 (5) | N2—C17—H17B | 109.1 |
| C5—C4—H4 | 119.8 | C18—C17—H17B | 109.1 |
| C3—C4—H4 | 119.8 | H17A—C17—H17B | 107.8 |
| C4—C5—C6 | 120.9 (5) | N3—C18—C17 | 111.7 (4) |
| C4—C5—H5 | 119.5 | N3—C18—H18A | 109.3 |
| C6—C5—H5 | 119.5 | C17—C18—H18A | 109.3 |
| C1—C6—C5 | 118.5 (4) | N3—C18—H18B | 109.3 |
| C1—C6—C7 | 119.3 (4) | C17—C18—H18B | 109.3 |
| C5—C6—C7 | 122.2 (4) | H18A—C18—H18B | 107.9 |
| N1—C7—C6 | 114.5 (4) | O4—C19—C20 | 113.2 (12) |
| N1—C7—H7A | 108.6 | O4—C19—H19A | 108.9 |
| C6—C7—H7A | 108.6 | C20—C19—H19A | 108.9 |
| N1—C7—H7B | 108.6 | O4—C19—H19B | 108.9 |
| C6—C7—H7B | 108.6 | C20—C19—H19B | 108.9 |
| H7A—C7—H7B | 107.6 | H19A—C19—H19B | 107.7 |
| O1—C8—N1 | 121.3 (4) | C19—C20—H20A | 109.5 |
| O1—C8—C9 | 119.5 (4) | C19—C20—H20B | 109.5 |
| N1—C8—C9 | 119.2 (3) | H20A—C20—H20B | 109.5 |
| C10—C9—C14 | 117.6 (4) | C19—C20—H20C | 109.5 |
| C10—C9—C8 | 116.4 (4) | H20A—C20—H20C | 109.5 |
| C14—C9—C8 | 126.0 (4) | H20B—C20—H20C | 109.5 |
| C9—C10—C11 | 121.7 (5) | C8—N1—C7 | 121.0 (4) |
| C9—C10—H10 | 119.1 | C8—N1—H1A | 119.5 |
| C11—C10—H10 | 119.1 | C7—N1—H1A | 119.5 |
| C12—C11—C10 | 120.3 (5) | C16—N2—C17 | 122.1 (4) |
| C12—C11—H11 | 119.9 | C16—N2—H2A | 118.9 |
| C10—C11—H11 | 119.9 | C17—N2—H2A | 118.9 |
| C11—C12—C13 | 120.0 (5) | C18—N3—C18i | 113.2 (5) |
| C11—C12—H12 | 120.0 | C18—N3—HN3 | 102 (2) |
| C13—C12—H12 | 120.0 | C18i—N3—HN3 | 117 (2) |
| C14—C13—C12 | 119.6 (5) | O7ii—N4—O5ii | 127.9 (6) |
| C14—C13—H13 | 120.2 | O7—N4—O5 | 127.9 (6) |
| C12—C13—H13 | 120.2 | O7—N4—O6 | 116.6 (8) |
| O2—C14—C13 | 122.8 (4) | O5—N4—O6 | 114.7 (7) |
| O2—C14—C9 | 116.4 (4) | O7ii—N4—O6ii | 116.6 (8) |
| C13—C14—C9 | 120.8 (4) | O5ii—N4—O6ii | 114.7 (7) |
| O2—C15—C16 | 106.9 (4) | C14—O2—C15 | 119.3 (3) |
| O2—C15—H15A | 110.3 | C19—O4—H4A | 107.3 |
| C16—C15—H15A | 110.3 | ||
| C6—C1—C2—C3 | 1.2 (8) | C12—C13—C14—O2 | −178.0 (4) |
| C1—C2—C3—C4 | −1.2 (8) | C12—C13—C14—C9 | 1.7 (7) |
| C2—C3—C4—C5 | 0.5 (9) | C10—C9—C14—O2 | 178.5 (4) |
| C3—C4—C5—C6 | 0.1 (8) | C8—C9—C14—O2 | −1.8 (5) |
| C2—C1—C6—C5 | −0.5 (7) | C10—C9—C14—C13 | −1.2 (6) |
| C2—C1—C6—C7 | −179.8 (5) | C8—C9—C14—C13 | 178.5 (4) |
| C4—C5—C6—C1 | −0.1 (7) | O2—C15—C16—O3 | 23.1 (6) |
| C4—C5—C6—C7 | 179.2 (5) | O2—C15—C16—N2 | −157.5 (4) |
| C1—C6—C7—N1 | −155.0 (4) | N2—C17—C18—N3 | −56.5 (5) |
| C5—C6—C7—N1 | 25.7 (7) | O1—C8—N1—C7 | −3.7 (5) |
| O1—C8—C9—C10 | −7.0 (5) | C9—C8—N1—C7 | 177.2 (3) |
| N1—C8—C9—C10 | 172.1 (4) | C6—C7—N1—C8 | 69.5 (5) |
| O1—C8—C9—C14 | 173.3 (3) | O3—C16—N2—C17 | 1.6 (7) |
| N1—C8—C9—C14 | −7.6 (5) | C15—C16—N2—C17 | −177.8 (4) |
| C14—C9—C10—C11 | 0.2 (6) | C18—C17—N2—C16 | −78.9 (5) |
| C8—C9—C10—C11 | −179.6 (4) | C17—C18—N3—C18i | −169.9 (4) |
| C9—C10—C11—C12 | 0.4 (8) | C13—C14—O2—C15 | 1.8 (6) |
| C10—C11—C12—C13 | 0.0 (9) | C9—C14—O2—C15 | −177.9 (3) |
| C11—C12—C13—C14 | −1.1 (8) | C16—C15—O2—C14 | 179.8 (3) |
| H··· | ||||
| N3—HN3···O5iii | 0.95 (4) | 2.49 (5) | 2.905 (9) | 106 (3) |
| N3—HN3···O5iv | 0.95 (4) | 2.41 (5) | 2.905 (9) | 112 (3) |
| N3—HN3···O1iv | 0.95 (4) | 2.01 (4) | 2.780 (3) | 137 (4) |
| O4—H4A···O3v | 0.85 | 1.89 | 2.740 (11) | 178 |
| N1—H1A···O2 | 0.86 | 1.99 | 2.645 (5) | 132 |
| N2—H2A···O5iv | 0.86 | 2.14 | 2.813 (9) | 135 |
| N2—H2A···O6iii | 0.86 | 2.35 | 3.185 (9) | 163 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N3—H | 0.95 (4) | 2.49 (5) | 2.905 (9) | 106 (3) |
| N3—H | 0.95 (4) | 2.41 (5) | 2.905 (9) | 112 (3) |
| N3—H | 0.95 (4) | 2.01 (4) | 2.780 (3) | 137 (4) |
| O4—H4 | 0.85 | 1.89 | 2.740 (11) | 178 |
| N1—H1 | 0.86 | 1.99 | 2.645 (5) | 132 |
| N2—H2 | 0.86 | 2.14 | 2.813 (9) | 135 |
| N2—H2 | 0.86 | 2.35 | 3.185 (9) | 163 |
Symmetry codes: (i) ; (ii) ; (iii) .