Literature DB >> 21522562

Dichlorido{2-morpholino-N-[1-(2-pyrid-yl)ethyl-idene]ethanamine-κN,N',N''}manganese(II).

Nurul Azimah Ikmal Hisham1, Nura Suleiman Gwaram, Hamid Khaledi, Hapipah Mohd Ali.   

Abstract

In the title compound, [MnCl(2)(C(13)H(19)N(3)O)], the Mn(II) ion is penta-coordinated in a distorted square-pyramidal geometry. The coordination environment is defined by the N,N',N''-tridentate Schiff base ligand and one Cl atom in the basal positions and one Cl atom in the apical position. In the crystal, inter-molecular C-H⋯Cl hydrogen bonds link the mol-ecules into a three-dimensional network. An intra-molecular C-H⋯Cl hydrogen bond is also observed.

Entities:  

Year:  2010        PMID: 21522562      PMCID: PMC3050125          DOI: 10.1107/S1600536810050221

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the crystal structure of the analogous CdII complex, see: Ikmal Hisham et al. (2010 ▶). For the crystal structure of [MnCl2(C24H25N3)], a structurally similar MnII complex, see: Schmiege et al. (2007 ▶).

Experimental

Crystal data

[MnCl2(C13H19N3O)] M = 359.15 Monoclinic, a = 9.6117 (6) Å b = 13.8507 (8) Å c = 12.1330 (7) Å β = 106.738 (1)° V = 1546.82 (16) Å3 Z = 4 Mo Kα radiation μ = 1.20 mm−1 T = 100 K 0.40 × 0.35 × 0.25 mm

Data collection

Bruker APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.646, T max = 0.754 15613 measured reflections 3543 independent reflections 3370 reflections with I > 2σ(I) R int = 0.019

Refinement

R[F 2 > 2σ(F 2)] = 0.020 wR(F 2) = 0.053 S = 1.11 3543 reflections 182 parameters H-atom parameters constrained Δρmax = 0.33 e Å−3 Δρmin = −0.23 e Å−3 Data collection: APEX2 (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: XP in SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXL97 and publCIF (Westrip, 2010 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810050221/is2637sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810050221/is2637Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[MnCl2(C13H19N3O)]F(000) = 740
Mr = 359.15Dx = 1.542 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 9925 reflections
a = 9.6117 (6) Åθ = 2.2–31.4°
b = 13.8507 (8) ŵ = 1.20 mm1
c = 12.1330 (7) ÅT = 100 K
β = 106.738 (1)°Block, orange
V = 1546.82 (16) Å30.40 × 0.35 × 0.25 mm
Z = 4
Bruker APEXII CCD diffractometer3543 independent reflections
Radiation source: fine-focus sealed tube3370 reflections with I > 2σ(I)
graphiteRint = 0.019
φ and ω scansθmax = 27.5°, θmin = 2.3°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −12→12
Tmin = 0.646, Tmax = 0.754k = −16→17
15613 measured reflectionsl = −15→15
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.020Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.053H-atom parameters constrained
S = 1.11w = 1/[σ2(Fo2) + (0.0202P)2 + 0.8164P] where P = (Fo2 + 2Fc2)/3
3543 reflections(Δ/σ)max = 0.001
182 parametersΔρmax = 0.33 e Å3
0 restraintsΔρmin = −0.23 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Mn10.227997 (19)0.094201 (13)0.662679 (15)0.01293 (6)
Cl10.46326 (3)0.14018 (2)0.77456 (2)0.01695 (7)
Cl20.04111 (3)0.21023 (2)0.63296 (3)0.01823 (7)
O10.18363 (10)0.06033 (8)1.01401 (8)0.0220 (2)
N10.26463 (11)0.11770 (8)0.48657 (9)0.0147 (2)
N20.24422 (11)−0.04625 (8)0.58539 (9)0.0152 (2)
N30.15480 (11)−0.01520 (8)0.78545 (8)0.0144 (2)
C10.25654 (14)0.20208 (9)0.43212 (11)0.0176 (2)
H10.22510.25730.46470.021*
C20.29241 (14)0.21242 (10)0.32937 (11)0.0195 (3)
H20.28540.27350.29260.023*
C30.33834 (14)0.13223 (10)0.28210 (11)0.0198 (3)
H30.36490.13750.21270.024*
C40.34524 (13)0.04350 (10)0.33739 (11)0.0172 (2)
H40.3760−0.01270.30610.021*
C50.30645 (12)0.03845 (9)0.43907 (10)0.0141 (2)
C60.29694 (13)−0.05409 (9)0.50011 (10)0.0143 (2)
C70.34077 (14)−0.14781 (9)0.45884 (11)0.0178 (2)
H7A0.3963−0.18600.52490.027*
H7B0.4010−0.13520.40760.027*
H7C0.2537−0.18370.41690.027*
C80.21498 (15)−0.13062 (9)0.64771 (11)0.0184 (3)
H8A0.3055−0.15300.70430.022*
H8B0.1756−0.18410.59350.022*
C90.10472 (15)−0.09964 (9)0.70858 (11)0.0187 (3)
H9A0.0123−0.08310.65030.022*
H9B0.0856−0.15440.75470.022*
C100.02951 (13)0.01896 (10)0.82360 (11)0.0182 (3)
H10A−0.0132−0.03620.85440.022*
H10B−0.04610.04550.75680.022*
C110.07601 (15)0.09582 (10)0.91531 (11)0.0209 (3)
H11A0.11540.15190.88350.025*
H11B−0.00960.11790.93820.025*
C120.30849 (14)0.03123 (10)0.98074 (11)0.0201 (3)
H12A0.38380.00671.04900.024*
H12B0.34900.08780.95070.024*
C130.27076 (14)−0.04662 (10)0.88940 (11)0.0182 (2)
H13A0.3589−0.06380.86700.022*
H13B0.2380−0.10510.92170.022*
U11U22U33U12U13U23
Mn10.01418 (10)0.01214 (10)0.01314 (9)−0.00041 (7)0.00499 (7)−0.00097 (6)
Cl10.01485 (13)0.01773 (15)0.01853 (14)−0.00194 (11)0.00523 (11)−0.00213 (11)
Cl20.01707 (14)0.01822 (15)0.01954 (14)0.00326 (11)0.00548 (11)−0.00012 (11)
O10.0215 (5)0.0319 (5)0.0142 (4)0.0012 (4)0.0078 (4)−0.0010 (4)
N10.0148 (5)0.0144 (5)0.0146 (5)−0.0003 (4)0.0039 (4)−0.0008 (4)
N20.0172 (5)0.0137 (5)0.0144 (5)−0.0015 (4)0.0042 (4)−0.0005 (4)
N30.0146 (5)0.0154 (5)0.0136 (5)−0.0011 (4)0.0045 (4)−0.0010 (4)
C10.0190 (6)0.0155 (6)0.0177 (6)0.0002 (5)0.0043 (5)−0.0003 (5)
C20.0216 (6)0.0184 (6)0.0172 (6)−0.0021 (5)0.0035 (5)0.0030 (5)
C30.0205 (6)0.0252 (7)0.0139 (5)−0.0032 (5)0.0055 (5)−0.0001 (5)
C40.0160 (6)0.0193 (6)0.0165 (6)−0.0009 (5)0.0049 (5)−0.0031 (5)
C50.0116 (5)0.0152 (6)0.0141 (5)−0.0004 (4)0.0016 (4)−0.0016 (4)
C60.0117 (5)0.0148 (6)0.0147 (5)−0.0009 (4)0.0011 (4)−0.0023 (4)
C70.0185 (6)0.0150 (6)0.0206 (6)0.0007 (5)0.0067 (5)−0.0030 (5)
C80.0265 (6)0.0123 (6)0.0172 (6)−0.0025 (5)0.0078 (5)−0.0002 (5)
C90.0222 (6)0.0161 (6)0.0184 (6)−0.0064 (5)0.0068 (5)−0.0016 (5)
C100.0143 (6)0.0237 (7)0.0179 (6)−0.0007 (5)0.0067 (5)0.0016 (5)
C110.0215 (6)0.0248 (7)0.0185 (6)0.0045 (5)0.0090 (5)0.0002 (5)
C120.0177 (6)0.0277 (7)0.0151 (6)−0.0004 (5)0.0050 (5)−0.0006 (5)
C130.0185 (6)0.0195 (6)0.0159 (6)0.0022 (5)0.0039 (5)0.0030 (5)
Mn1—N22.1845 (11)C4—H40.9500
Mn1—N12.2867 (10)C5—C61.4963 (17)
Mn1—Cl22.3593 (4)C6—C71.4949 (17)
Mn1—Cl12.3651 (4)C7—H7A0.9800
Mn1—N32.3694 (10)C7—H7B0.9800
O1—C111.4255 (16)C7—H7C0.9800
O1—C121.4300 (15)C8—C91.5178 (18)
N1—C11.3337 (17)C8—H8A0.9900
N1—C51.3535 (16)C8—H8B0.9900
N2—C61.2811 (16)C9—H9A0.9900
N2—C81.4624 (16)C9—H9B0.9900
N3—C101.4864 (15)C10—C111.5116 (18)
N3—C91.4869 (16)C10—H10A0.9900
N3—C131.4875 (16)C10—H10B0.9900
C1—C21.3932 (17)C11—H11A0.9900
C1—H10.9500C11—H11B0.9900
C2—C31.3796 (19)C12—C131.5135 (18)
C2—H20.9500C12—H12A0.9900
C3—C41.3925 (19)C12—H12B0.9900
C3—H30.9500C13—H13A0.9900
C4—C51.3896 (17)C13—H13B0.9900
N2—Mn1—N171.12 (4)C6—C7—H7B109.5
N2—Mn1—Cl2133.34 (3)H7A—C7—H7B109.5
N1—Mn1—Cl294.33 (3)C6—C7—H7C109.5
N2—Mn1—Cl1108.15 (3)H7A—C7—H7C109.5
N1—Mn1—Cl196.83 (3)H7B—C7—H7C109.5
Cl2—Mn1—Cl1117.667 (13)N2—C8—C9106.90 (10)
N2—Mn1—N376.77 (4)N2—C8—H8A110.3
N1—Mn1—N3146.31 (4)C9—C8—H8A110.3
Cl2—Mn1—N3100.42 (3)N2—C8—H8B110.3
Cl1—Mn1—N3102.67 (3)C9—C8—H8B110.3
C11—O1—C12108.96 (9)H8A—C8—H8B108.6
C1—N1—C5118.81 (11)N3—C9—C8112.48 (10)
C1—N1—Mn1125.80 (8)N3—C9—H9A109.1
C5—N1—Mn1115.27 (8)C8—C9—H9A109.1
C6—N2—C8121.97 (11)N3—C9—H9B109.1
C6—N2—Mn1121.06 (9)C8—C9—H9B109.1
C8—N2—Mn1116.20 (8)H9A—C9—H9B107.8
C10—N3—C9107.50 (10)N3—C10—C11111.04 (10)
C10—N3—C13107.79 (9)N3—C10—H10A109.4
C9—N3—C13109.27 (10)C11—C10—H10A109.4
C10—N3—Mn1113.96 (8)N3—C10—H10B109.4
C9—N3—Mn1102.11 (7)C11—C10—H10B109.4
C13—N3—Mn1115.75 (7)H10A—C10—H10B108.0
N1—C1—C2122.63 (12)O1—C11—C10111.39 (11)
N1—C1—H1118.7O1—C11—H11A109.3
C2—C1—H1118.7C10—C11—H11A109.3
C3—C2—C1118.72 (12)O1—C11—H11B109.3
C3—C2—H2120.6C10—C11—H11B109.3
C1—C2—H2120.6H11A—C11—H11B108.0
C2—C3—C4119.13 (12)O1—C12—C13111.34 (11)
C2—C3—H3120.4O1—C12—H12A109.4
C4—C3—H3120.4C13—C12—H12A109.4
C5—C4—C3118.98 (12)O1—C12—H12B109.4
C5—C4—H4120.5C13—C12—H12B109.4
C3—C4—H4120.5H12A—C12—H12B108.0
N1—C5—C4121.71 (11)N3—C13—C12112.05 (11)
N1—C5—C6114.59 (10)N3—C13—H13A109.2
C4—C5—C6123.57 (11)C12—C13—H13A109.2
N2—C6—C7124.01 (12)N3—C13—H13B109.2
N2—C6—C5114.95 (11)C12—C13—H13B109.2
C7—C6—C5120.98 (11)H13A—C13—H13B107.9
C6—C7—H7A109.5
D—H···AD—HH···AD···AD—H···A
C4—H4···Cl1i0.952.713.6257 (13)163.
C7—H7C···Cl2ii0.982.753.6202 (13)149.
C8—H8A···Cl2iii0.992.833.7207 (14)151.
C12—H12B···Cl10.992.773.5904 (14)141.
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C4—H4⋯Cl1i0.952.713.6257 (13)163
C7—H7C⋯Cl2ii0.982.753.6202 (13)149
C8—H8A⋯Cl2iii0.992.833.7207 (14)151
C12—H12B⋯Cl10.992.773.5904 (14)141

Symmetry codes: (i) ; (ii) ; (iii) .

  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Alternatives to pyridinediimine ligands: syntheses and structures of metal complexes supported by donor-modified alpha-diimine ligands.

Authors:  Benjamin M Schmiege; Michael J Carney; Brooke L Small; Deidra L Gerlach; Jason A Halfen
Journal:  Dalton Trans       Date:  2007-04-16       Impact factor: 4.390

3.  Dichlorido{2-morpholino-N-[1-(2-pyri-dyl)ethyl-idene]ethanamine-κN,N',N''}cadmium.

Authors:  Nurulazimah Ikmal Hisham; Nura Suleiman Gwaram; Hamid Khaledi; Hapipah Mohd Ali
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-10-30
  3 in total

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