Literature DB >> 21522500

Microfluidic enrichment of small proteins from complex biological mixture on nanoporous silica chip.

Ye Hu, Ashwini Gopal, Kevin Lin, Yang Peng, Ennio Tasciotti, Xiaojing John Zhang, Mauro Ferrari.   

Abstract

The growing field of miniaturized diagnostics is hindered by a lack of pre-analysis treatments that are capable of processing small sample volumes for the detection of low concentration analytes in a high-throughput manner. This letter presents a novel, highly efficient method for the extraction of low-molecular weight (LMW) proteins from biological fluids, represented by a mixture of standard proteins, using integrated microfluidic systems. We bound a polydimethylsiloxane layer patterned with a microfluidic channel onto a well-defined nanoporous silica substrate. Using rapid, pressure-driven fractionation steps, this system utilizes the size-exclusion properties of the silica nanopores to remove high molecular weight proteins while simultaneously isolating and enriching LMW proteins present in the biological sample. The introduction of the microfluidic component offers important advantages such as high reproducibility, a simple user interface, controlled environment, the ability to process small sample volumes, and precise quantification. This solution streamlines high-throughput proteomics research on many fronts and may find broad acceptance and application in clinical diagnostics and point of care detection.

Entities:  

Year:  2011        PMID: 21522500      PMCID: PMC3082347          DOI: 10.1063/1.3528237

Source DB:  PubMed          Journal:  Biomicrofluidics        ISSN: 1932-1058            Impact factor:   2.800


  33 in total

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Authors:  Ruth Etzioni; Nicole Urban; Scott Ramsey; Martin McIntosh; Stephen Schwartz; Brian Reid; Jerald Radich; Garnet Anderson; Leland Hartwell
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Review 2.  Physics and applications of microfluidics in biology.

Authors:  David J Beebe; Glennys A Mensing; Glenn M Walker
Journal:  Annu Rev Biomed Eng       Date:  2002-03-22       Impact factor: 9.590

3.  Clinical proteomics: written in blood.

Authors:  Lance A Liotta; Mauro Ferrari; Emanuel Petricoin
Journal:  Nature       Date:  2003-10-30       Impact factor: 49.962

Review 4.  Microfluidic systems in proteomics.

Authors:  Niels Lion; Tatiana C Rohner; Loïc Dayon; Isabelle L Arnaud; Eugen Damoc; Nikolay Youhnovski; Zhi-Yong Wu; Christophe Roussel; Jacques Josserand; Henrik Jensen; Joël S Rossier; Michael Przybylski; Hubert H Girault
Journal:  Electrophoresis       Date:  2003-11       Impact factor: 3.535

5.  Preanalytical impact of sample handling on proteome profiling experiments with matrix-assisted laser desorption/ionization time-of-flight mass spectrometry.

Authors:  Peter Findeisen; Diamandula Sismanidis; Martin Riedl; Victor Costina; Michael Neumaier
Journal:  Clin Chem       Date:  2005-12       Impact factor: 8.327

6.  Protein fragment domains identified using 2D gel electrophoresis/MALDI-TOF.

Authors:  Maria D Person; Jianjun Shen; Angelina Traner; Sean C Hensley; Herng-Hsiang Lo; James L Abbruzzese; Donghui Li
Journal:  J Biomol Tech       Date:  2006-04

7.  Depletion of high-abundance proteins from serum by immunoaffinity chromatography: a MALDI-FT-MS study.

Authors:  Lennard J Dekker; Jan Bosman; Peter C Burgers; Angelique van Rijswijk; Robert Freije; Theo Luider; Rainer Bischoff
Journal:  J Chromatogr B Analyt Technol Biomed Life Sci       Date:  2006-10-17       Impact factor: 3.205

8.  Biotechnology at low Reynolds numbers.

Authors:  J P Brody; P Yager; R E Goldstein; R H Austin
Journal:  Biophys J       Date:  1996-12       Impact factor: 4.033

9.  Anion exchange fractionation of serum proteins versus albumin elimination.

Authors:  Ziad J Sahab; Kenneth A Iczkowski; Qing-Xiang Amy Sang
Journal:  Anal Biochem       Date:  2007-06-08       Impact factor: 3.365

10.  Proteome-based plasma biomarkers for Alzheimer's disease.

Authors:  A Hye; S Lynham; M Thambisetty; M Causevic; J Campbell; H L Byers; C Hooper; F Rijsdijk; S J Tabrizi; S Banner; C E Shaw; C Foy; M Poppe; N Archer; G Hamilton; J Powell; R G Brown; P Sham; M Ward; S Lovestone
Journal:  Brain       Date:  2006-11       Impact factor: 13.501

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  4 in total

1.  Simulation guided design of a microfluidic device for electrophoretic stretching of DNA.

Authors:  Chih-Chen Hsieh; Tsung-Hsien Lin; Chiou-De Huang
Journal:  Biomicrofluidics       Date:  2012-10-24       Impact factor: 2.800

2.  Analysis of tubulin alpha-1A/1B C-terminal tail post-translational poly-glutamylation reveals novel modification sites.

Authors:  Ziad J Sahab; Alexander Kirilyuk; Lihua Zhang; Zahraa I Khamis; Petr Pompach; Youme Sung; Stephen W Byers
Journal:  J Proteome Res       Date:  2012-02-15       Impact factor: 4.466

3.  Circulating proteolytic products of carboxypeptidase N for early detection of breast cancer.

Authors:  Yaojun Li; Yueguo Li; Tao Chen; Anna S Kuklina; Paul Bernard; Francisco J Esteva; Haifa Shen; Mauro Ferrari; Ye Hu
Journal:  Clin Chem       Date:  2013-10-21       Impact factor: 8.327

4.  Monitoring the progression of metastatic breast cancer on nanoporous silica chips.

Authors:  Jia Fan; Xiaoyong Deng; James W Gallagher; Haiyu Huang; Yi Huang; Jianguo Wen; Mauro Ferrari; Haifa Shen; Ye Hu
Journal:  Philos Trans A Math Phys Eng Sci       Date:  2012-05-28       Impact factor: 4.226

  4 in total

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