Literature DB >> 21522479

1,4-Bis{[5-(pyridin-4-yl)-1,3,4-oxadiazol-2-yl]sulfan-yl}butane.

Qing-Lei Liu, Wei Wang, Yan Gao, Xiao-Yu Jia, Jing-Jing Zhang.   

Abstract

In the centrosymmetric title compound, C(18)H(16)N(6)O(2)S(2), the 1,3,4-oxadiazole and the attached pyridinyl ring are twisted by 5.3 (3)°.

Entities:  

Year:  2011        PMID: 21522479      PMCID: PMC3052088          DOI: 10.1107/S1600536811006805

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For applications of heterocyclic derivatives, see: Al-Talib et al. (1990 ▶); Nakagawa et al. (1996 ▶); Zhang et al. (2007 ▶). For related structuresbn,, see: Wang et al. (2010 ▶, 2011 ▶); Zhao et al. (2010 ▶).

Experimental

Crystal data

C18H16N6O2S2 M = 412.49 Monoclinic, a = 4.9780 (6) Å b = 5.7933 (7) Å c = 31.003 (4) Å β = 92.588 (5)° V = 893.20 (18) Å3 Z = 2 Mo Kα radiation μ = 0.33 mm−1 T = 113 K 0.20 × 0.18 × 0.10 mm

Data collection

Rigaku Saturn CCD area-detector diffractometer Absorption correction: multi-scan (CrystalClear; Rigaku/MSC, 2005 ▶) T min = 0.937, T max = 0.962 8437 measured reflections 2128 independent reflections 1811 reflections with I > 2σ(I) R int = 0.035

Refinement

R[F 2 > 2σ(F 2)] = 0.032 wR(F 2) = 0.089 S = 1.10 2128 reflections 127 parameters H-atom parameters constrained Δρmax = 0.40 e Å−3 Δρmin = −0.19 e Å−3 Data collection: CrystalClear (Rigaku/MSC, 2005 ▶); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536811006805/kp2310sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536811006805/kp2310Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C18H16N6O2S2F(000) = 428
Mr = 412.49Dx = 1.534 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 2798 reflections
a = 4.9780 (6) Åθ = 2.6–27.9°
b = 5.7933 (7) ŵ = 0.33 mm1
c = 31.003 (4) ÅT = 113 K
β = 92.588 (5)°Prism, light-yellow
V = 893.20 (18) Å30.20 × 0.18 × 0.10 mm
Z = 2
Rigaku Saturn CCD area-detector diffractometer2128 independent reflections
Radiation source: rotating anode1811 reflections with I > 2σ(I)
multilayerRint = 0.035
Detector resolution: 14.63 pixels mm-1θmax = 27.9°, θmin = 2.6°
φ and ω scansh = −4→6
Absorption correction: multi-scan (CrystalClear; Rigaku/MSC, 2005)k = −7→7
Tmin = 0.937, Tmax = 0.962l = −38→40
8437 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.032Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.089H-atom parameters constrained
S = 1.10w = 1/[σ2(Fo2) + (0.0531P)2 + 0.054P] where P = (Fo2 + 2Fc2)/3
2128 reflections(Δ/σ)max = 0.001
127 parametersΔρmax = 0.40 e Å3
0 restraintsΔρmin = −0.19 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.25227 (6)0.35176 (5)0.422550 (9)0.01776 (12)
O10.61211 (17)0.17771 (15)0.37253 (3)0.0163 (2)
N11.3455 (2)−0.0526 (2)0.27364 (3)0.0197 (2)
N20.7346 (2)−0.15583 (19)0.40229 (3)0.0186 (2)
N30.5348 (2)−0.05632 (19)0.42735 (3)0.0189 (2)
C11.1858 (3)0.1307 (2)0.27715 (4)0.0190 (3)
H11.20630.25510.25760.023*
C20.9910 (3)0.1507 (2)0.30774 (4)0.0179 (3)
H20.87970.28360.30860.021*
C30.9634 (2)−0.0287 (2)0.33688 (4)0.0155 (3)
C41.1268 (3)−0.2220 (2)0.33375 (4)0.0185 (3)
H41.1125−0.34790.35310.022*
C51.3118 (3)−0.2262 (2)0.30146 (4)0.0199 (3)
H51.4206−0.35980.29900.024*
C60.7718 (2)−0.0138 (2)0.37112 (4)0.0153 (3)
C70.4729 (2)0.1379 (2)0.40882 (4)0.0152 (3)
C80.1260 (3)0.2236 (2)0.47114 (4)0.0177 (3)
H8A0.03310.07640.46400.021*
H8B0.27700.19080.49210.021*
C9−0.0695 (3)0.3927 (2)0.49063 (4)0.0178 (3)
H9A−0.20520.44030.46800.021*
H9B−0.16520.31370.51370.021*
U11U22U33U12U13U23
S10.0216 (2)0.01715 (19)0.01492 (18)0.00366 (11)0.00549 (12)0.00101 (11)
O10.0174 (4)0.0179 (5)0.0140 (4)0.0017 (3)0.0045 (3)0.0003 (3)
N10.0180 (5)0.0223 (6)0.0191 (5)−0.0024 (4)0.0030 (4)−0.0030 (4)
N20.0208 (6)0.0179 (6)0.0176 (5)0.0020 (4)0.0053 (4)−0.0002 (4)
N30.0201 (5)0.0193 (6)0.0177 (5)0.0022 (4)0.0053 (4)−0.0003 (4)
C10.0194 (7)0.0202 (7)0.0176 (6)−0.0024 (5)0.0037 (5)0.0011 (5)
C20.0178 (6)0.0173 (6)0.0186 (6)0.0012 (5)0.0023 (5)−0.0005 (5)
C30.0146 (6)0.0185 (6)0.0132 (5)−0.0014 (5)−0.0001 (4)−0.0016 (4)
C40.0205 (6)0.0185 (6)0.0166 (6)0.0009 (5)0.0022 (5)0.0009 (5)
C50.0193 (6)0.0200 (6)0.0207 (6)0.0025 (5)0.0029 (5)−0.0026 (5)
C60.0142 (6)0.0160 (6)0.0158 (6)0.0011 (4)0.0003 (4)−0.0017 (4)
C70.0155 (6)0.0188 (6)0.0114 (5)−0.0013 (4)0.0028 (4)−0.0014 (4)
C80.0215 (6)0.0162 (6)0.0158 (6)−0.0010 (5)0.0055 (5)−0.0007 (5)
C90.0173 (6)0.0182 (6)0.0183 (6)−0.0013 (5)0.0042 (5)−0.0030 (5)
S1—C71.7218 (13)C2—H20.9500
S1—C81.8171 (12)C3—C41.3902 (17)
O1—C61.3669 (14)C3—C61.4615 (16)
O1—C71.3675 (14)C4—C51.3906 (17)
N1—C11.3337 (17)C4—H40.9500
N1—C51.3404 (17)C5—H50.9500
N2—C61.2888 (16)C8—C91.5251 (17)
N2—N31.4121 (15)C8—H8A0.9900
N3—C71.2941 (16)C8—H8B0.9900
C1—C21.3914 (18)C9—C9i1.525 (2)
C1—H10.9500C9—H9A0.9900
C2—C31.3878 (17)C9—H9B0.9900
C7—S1—C899.16 (6)C4—C5—H5118.1
C6—O1—C7101.91 (9)N2—C6—O1113.00 (10)
C1—N1—C5116.91 (11)N2—C6—C3128.89 (11)
C6—N2—N3106.29 (10)O1—C6—C3118.07 (10)
C7—N3—N2105.69 (10)N3—C7—O1113.10 (11)
N1—C1—C2123.91 (12)N3—C7—S1131.13 (10)
N1—C1—H1118.0O1—C7—S1115.76 (9)
C2—C1—H1118.0C9—C8—S1108.47 (9)
C3—C2—C1118.29 (12)C9—C8—H8A110.0
C3—C2—H2120.9S1—C8—H8A110.0
C1—C2—H2120.9C9—C8—H8B110.0
C2—C3—C4118.84 (11)S1—C8—H8B110.0
C2—C3—C6121.06 (11)H8A—C8—H8B108.4
C4—C3—C6120.08 (11)C9i—C9—C8112.82 (13)
C3—C4—C5118.21 (12)C9i—C9—H9A109.0
C3—C4—H4120.9C8—C9—H9A109.0
C5—C4—H4120.9C9i—C9—H9B109.0
N1—C5—C4123.80 (12)C8—C9—H9B109.0
N1—C5—H5118.1H9A—C9—H9B107.8
C6—N2—N3—C7−0.50 (14)C2—C3—C6—N2−174.70 (13)
C5—N1—C1—C20.29 (19)C4—C3—C6—N23.7 (2)
N1—C1—C2—C31.2 (2)C2—C3—C6—O12.71 (17)
C1—C2—C3—C4−1.37 (19)C4—C3—C6—O1−178.93 (11)
C1—C2—C3—C6177.01 (11)N2—N3—C7—O10.93 (14)
C2—C3—C4—C50.23 (18)N2—N3—C7—S1−177.95 (10)
C6—C3—C4—C5−178.17 (11)C6—O1—C7—N3−0.96 (13)
C1—N1—C5—C4−1.56 (19)C6—O1—C7—S1178.10 (8)
C3—C4—C5—N11.3 (2)C8—S1—C7—N3−0.56 (14)
N3—N2—C6—O1−0.09 (14)C8—S1—C7—O1−179.42 (9)
N3—N2—C6—C3177.42 (12)C7—S1—C8—C9177.46 (9)
C7—O1—C6—N20.61 (13)S1—C8—C9—C9i−69.35 (15)
C7—O1—C6—C3−177.20 (11)
  4 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  1-(2-Benzoyl-1-phenyl-eth-yl)-4-[(2-hy-droxy-1-naphth-yl)methyl-idene-amino]-3-methyl-1H-1,2,4-triazole-5(4H)-thione.

Authors:  Wei Wang; Yan Gao; Zuo-Bing Xiao; Hong-Guo Yao; Jing-Jing Zhang
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-01-08

3.  4,4',5,5'-Tetra-phenyl-3,3'-[methyl-idene-bis(sulfanedi-yl)]bis-(4H-1,2,4-triazole).

Authors:  Bing Zhao; Zhuo Liu; Yan Gao; Bo Song; Qi-Gang Deng
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-10-20

4.  Bis[(5-phenyl-1,3,4-thia-diazol-2-yl)sulfan-yl]methane.

Authors:  He-Wen Wang; Yan Gao; Wei Wang
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-11-06
  4 in total

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