Literature DB >> 21522458

2-(2-Hy-droxy-3-meth-oxy-phen-yl)-6H-perimidin-6-one.

Hoong-Kun Fun, Kullapa Chanawanno, Suchada Chantrapromma.   

Abstract

The mol-ecule of the title perimidine derivative, C(18)H(12)N(2)O(3), is essentially planar, the dihedral angle between the benzene and perimidine rings being 3.25 (5)°. The hy-droxy and meth-oxy groups lie in the plane of the benzene ring to which they are bound [O-C-C-C = 179.96 (11)° and C-O-C-C = -177.96 (12)°]. An intra-molecular O-H⋯N inter-action generates an S(6) ring motif. In the crystal, mol-ecules are linked by pairs of C-H⋯O inter-actions into dimers, which generate S(16) ring motifs. These dimers are arranged into sheets parallel to the ac plane and further stacked down the b axis by π-π inter-actions, with centroid-centroid distances in the range 3.5066 (8)-3.7241 (7) Å.

Entities:  

Year:  2011        PMID: 21522458      PMCID: PMC3051947          DOI: 10.1107/S1600536811006465

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For hydrogen-bond motifs, see: Bernstein et al. (1995 ▶). For bond-length data, see: Allen et al. (1987 ▶). For background to perimidines and their applications, see: Claramunt et al. (1995 ▶); del Valle et al. (1997 ▶); Herbert et al. (1987 ▶); Llamas-Saiz et al. (1995 ▶); Pozharskii & Dalnikovskaya (1981 ▶); Varsha et al. (2010 ▶). For related structures, see: Llamas-Saiz et al. (1995 ▶); Varsha et al. (2010 ▶). For the stability of the temperature controller used in the data collection, see: Cosier & Glazer (1986 ▶).

Experimental

Crystal data

C18H12N2O3 M = 304.30 Monoclinic, a = 25.4718 (17) Å b = 7.0666 (3) Å c = 15.0815 (6) Å β = 94.373 (3)° V = 2706.8 (2) Å3 Z = 8 Mo Kα radiation μ = 0.10 mm−1 T = 100 K 0.67 × 0.11 × 0.05 mm

Data collection

Bruker APEX DUO CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2005 ▶) T min = 0.933, T max = 0.994 42939 measured reflections 6529 independent reflections 3471 reflections with I > 2σ(I) R int = 0.072

Refinement

R[F 2 > 2σ(F 2)] = 0.066 wR(F 2) = 0.210 S = 1.02 6529 reflections 255 parameters All H-atom parameters refined Δρmax = 0.57 e Å−3 Δρmin = −0.29 e Å−3 Data collection: APEX2 (Bruker, 2005 ▶); cell refinement: SAINT (Bruker, 2005 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536811006465/sj5107sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536811006465/sj5107Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C18H12N2O3F(000) = 1264
Mr = 304.30Dx = 1.493 Mg m3
Monoclinic, C2/cMelting point = 507–508 K
Hall symbol: -C 2ycMo Kα radiation, λ = 0.71073 Å
a = 25.4718 (17) ÅCell parameters from 6529 reflections
b = 7.0666 (3) Åθ = 1.6–36.3°
c = 15.0815 (6) ŵ = 0.10 mm1
β = 94.373 (3)°T = 100 K
V = 2706.8 (2) Å3Needle, purple
Z = 80.67 × 0.11 × 0.05 mm
Bruker APEX DUO CCD area-detector diffractometer6529 independent reflections
Radiation source: sealed tube3471 reflections with I > 2σ(I)
graphiteRint = 0.072
φ and ω scansθmax = 36.3°, θmin = 1.6°
Absorption correction: multi-scan (SADABS; Bruker, 2005)h = −42→34
Tmin = 0.933, Tmax = 0.994k = −11→11
42939 measured reflectionsl = −24→25
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.066Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.210All H-atom parameters refined
S = 1.02w = 1/[σ2(Fo2) + (0.110P)2] where P = (Fo2 + 2Fc2)/3
6529 reflections(Δ/σ)max = 0.001
255 parametersΔρmax = 0.57 e Å3
0 restraintsΔρmin = −0.29 e Å3
Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O11.20986 (4)0.86652 (17)0.36853 (7)0.0390 (3)
O20.93604 (4)0.76137 (15)0.66009 (7)0.0305 (2)
H1O20.9692 (9)0.784 (3)0.6441 (15)0.068 (7)*
O30.83728 (4)0.69274 (15)0.67439 (7)0.0307 (2)
N11.00314 (4)0.71962 (15)0.40931 (7)0.0230 (2)
N21.01534 (4)0.77988 (14)0.56606 (7)0.0217 (2)
C10.92971 (5)0.68964 (16)0.50224 (9)0.0213 (2)
C20.90819 (5)0.70778 (17)0.58472 (9)0.0229 (3)
C30.85404 (5)0.66982 (18)0.59105 (9)0.0245 (3)
C40.82297 (5)0.61425 (18)0.51641 (10)0.0269 (3)
H40.7846 (8)0.588 (3)0.5190 (13)0.053 (5)*
C50.84470 (5)0.59241 (19)0.43503 (9)0.0271 (3)
H50.8242 (6)0.542 (2)0.3839 (11)0.032 (4)*
C60.89730 (5)0.62922 (18)0.42762 (9)0.0242 (3)
H60.9121 (6)0.608 (3)0.3716 (12)0.039 (5)*
C70.98576 (5)0.73220 (16)0.49261 (9)0.0208 (2)
C81.05351 (5)0.75829 (17)0.40160 (9)0.0222 (2)
C91.07449 (5)0.7429 (2)0.31468 (9)0.0271 (3)
H91.0495 (6)0.696 (2)0.2625 (11)0.027 (4)*
C101.12551 (5)0.7780 (2)0.30472 (9)0.0281 (3)
H101.1420 (6)0.761 (2)0.2446 (11)0.031 (4)*
C111.16293 (5)0.83502 (19)0.37912 (9)0.0269 (3)
C121.14203 (5)0.84961 (17)0.46741 (9)0.0233 (3)
C131.17405 (5)0.89476 (19)0.54295 (9)0.0268 (3)
H131.2155 (6)0.916 (2)0.5341 (11)0.032*
C141.15283 (5)0.90293 (19)0.62651 (10)0.0284 (3)
H141.1753 (6)0.931 (2)0.6784 (10)0.029 (4)*
C151.10056 (5)0.86583 (18)0.63559 (9)0.0257 (3)
H151.0859 (6)0.865 (2)0.6931 (12)0.036 (4)*
C161.06736 (5)0.81935 (16)0.55893 (9)0.0218 (2)
C171.08818 (5)0.81121 (16)0.47560 (8)0.0206 (2)
C180.78320 (6)0.6497 (2)0.68447 (12)0.0338 (3)
H18A0.7621 (7)0.737 (3)0.6464 (12)0.039 (5)*
H18B0.7746 (6)0.521 (3)0.6683 (10)0.032 (4)*
H18C0.7805 (7)0.666 (2)0.7467 (12)0.035 (4)*
U11U22U33U12U13U23
O10.0255 (5)0.0525 (7)0.0408 (6)−0.0050 (5)0.0157 (4)0.0022 (5)
O20.0225 (5)0.0393 (6)0.0313 (5)−0.0060 (4)0.0121 (4)−0.0095 (4)
O30.0201 (4)0.0387 (6)0.0353 (5)−0.0036 (4)0.0158 (4)−0.0050 (4)
N10.0213 (5)0.0227 (5)0.0261 (6)0.0006 (4)0.0090 (4)0.0043 (4)
N20.0189 (5)0.0195 (5)0.0278 (6)−0.0018 (4)0.0099 (4)−0.0012 (4)
C10.0201 (5)0.0168 (5)0.0282 (6)0.0001 (4)0.0088 (5)0.0031 (4)
C20.0204 (6)0.0202 (5)0.0290 (7)−0.0007 (4)0.0089 (5)−0.0003 (4)
C30.0222 (6)0.0220 (5)0.0309 (7)0.0002 (4)0.0112 (5)0.0011 (5)
C40.0186 (6)0.0244 (6)0.0383 (8)−0.0017 (5)0.0073 (5)0.0059 (5)
C50.0235 (6)0.0268 (6)0.0313 (7)−0.0019 (5)0.0036 (5)0.0066 (5)
C60.0245 (6)0.0234 (6)0.0254 (6)−0.0002 (4)0.0066 (5)0.0054 (5)
C70.0213 (5)0.0171 (5)0.0253 (6)0.0013 (4)0.0092 (5)0.0019 (4)
C80.0212 (5)0.0196 (5)0.0266 (6)0.0013 (4)0.0079 (5)0.0041 (4)
C90.0265 (6)0.0316 (6)0.0244 (6)0.0006 (5)0.0096 (5)0.0042 (5)
C100.0273 (6)0.0330 (7)0.0254 (7)0.0006 (5)0.0118 (5)0.0051 (5)
C110.0249 (6)0.0271 (6)0.0304 (7)0.0000 (5)0.0127 (5)0.0043 (5)
C120.0204 (5)0.0213 (5)0.0297 (6)−0.0008 (4)0.0109 (5)0.0026 (5)
C130.0219 (6)0.0261 (6)0.0336 (7)−0.0046 (5)0.0090 (5)0.0000 (5)
C140.0248 (6)0.0295 (6)0.0319 (7)−0.0057 (5)0.0077 (5)−0.0041 (5)
C150.0245 (6)0.0263 (6)0.0273 (7)−0.0051 (5)0.0100 (5)−0.0033 (5)
C160.0211 (5)0.0175 (5)0.0281 (6)−0.0020 (4)0.0104 (4)−0.0016 (4)
C170.0210 (5)0.0168 (5)0.0253 (6)0.0000 (4)0.0094 (4)0.0024 (4)
C180.0192 (6)0.0437 (9)0.0405 (9)−0.0047 (6)0.0145 (6)−0.0017 (7)
O1—C111.2384 (16)C8—C171.4196 (18)
O2—C21.3474 (16)C8—C91.4568 (19)
O2—H1O20.91 (2)C9—C101.3427 (19)
O3—C31.3676 (16)C9—H91.028 (16)
O3—C181.4301 (16)C10—C111.472 (2)
N1—C81.3256 (16)C10—H101.035 (17)
N1—C71.3663 (17)C11—C121.4747 (18)
N2—C71.3345 (17)C12—C131.3868 (19)
N2—C161.3664 (16)C12—C171.4127 (17)
C1—C21.4030 (18)C13—C141.4098 (19)
C1—C61.4102 (19)C13—H131.085 (16)
C1—C71.4769 (17)C14—C151.3739 (18)
C2—C31.4155 (17)C14—H140.955 (15)
C3—C41.3827 (19)C15—C161.4179 (18)
C4—C51.393 (2)C15—H150.970 (17)
C4—H41.000 (19)C16—C171.4019 (18)
C5—C61.3777 (18)C18—H18A0.976 (18)
C5—H50.966 (16)C18—H18B0.963 (17)
C6—H60.963 (18)C18—H18C0.954 (18)
C2—O2—H1O2105.4 (14)C9—C10—C11122.77 (12)
C3—O3—C18116.32 (11)C9—C10—H10122.6 (9)
C8—N1—C7116.80 (11)C11—C10—H10114.6 (9)
C7—N2—C16118.40 (11)O1—C11—C10121.75 (12)
C2—C1—C6119.38 (11)O1—C11—C12121.49 (13)
C2—C1—C7120.97 (11)C10—C11—C12116.75 (11)
C6—C1—C7119.65 (11)C13—C12—C17119.11 (12)
O2—C2—C1123.88 (11)C13—C12—C11121.84 (12)
O2—C2—C3116.70 (11)C17—C12—C11119.03 (12)
C1—C2—C3119.41 (12)C12—C13—C14120.14 (12)
O3—C3—C4125.62 (12)C12—C13—H13116.6 (8)
O3—C3—C2114.43 (12)C14—C13—H13123.2 (8)
C4—C3—C2119.95 (12)C15—C14—C13121.45 (13)
C3—C4—C5120.50 (12)C15—C14—H14118.9 (9)
C3—C4—H4121.5 (11)C13—C14—H14119.6 (9)
C5—C4—H4118.0 (11)C14—C15—C16119.02 (12)
C6—C5—C4120.32 (13)C14—C15—H15122.2 (10)
C6—C5—H5118.3 (9)C16—C15—H15118.7 (10)
C4—C5—H5121.2 (9)N2—C16—C17119.84 (11)
C5—C6—C1120.42 (12)N2—C16—C15120.32 (11)
C5—C6—H6119.3 (10)C17—C16—C15119.84 (11)
C1—C6—H6120.2 (10)C16—C17—C12120.44 (12)
N2—C7—N1125.29 (11)C16—C17—C8117.41 (11)
N2—C7—C1117.29 (11)C12—C17—C8122.12 (11)
N1—C7—C1117.42 (11)O3—C18—H18A107.1 (10)
N1—C8—C17122.25 (12)O3—C18—H18B112.2 (9)
N1—C8—C9119.17 (12)H18A—C18—H18B110.1 (14)
C17—C8—C9118.57 (11)O3—C18—H18C102.7 (10)
C10—C9—C8120.76 (13)H18A—C18—H18C115.0 (15)
C10—C9—H9121.4 (9)H18B—C18—H18C109.5 (14)
C8—C9—H9117.7 (9)
C6—C1—C2—O2178.87 (11)C8—C9—C10—C11−0.6 (2)
C7—C1—C2—O2−0.90 (19)C9—C10—C11—O1179.92 (13)
C6—C1—C2—C3−1.62 (18)C9—C10—C11—C121.0 (2)
C7—C1—C2—C3178.60 (10)O1—C11—C12—C13−1.6 (2)
C18—O3—C3—C41.88 (19)C10—C11—C12—C13177.40 (12)
C18—O3—C3—C2−177.96 (12)O1—C11—C12—C17−179.71 (12)
O2—C2—C3—O3−0.19 (17)C10—C11—C12—C17−0.76 (17)
C1—C2—C3—O3−179.73 (10)C17—C12—C13—C14−0.32 (19)
O2—C2—C3—C4179.96 (11)C11—C12—C13—C14−178.48 (12)
C1—C2—C3—C40.42 (18)C12—C13—C14—C150.4 (2)
O3—C3—C4—C5−178.86 (12)C13—C14—C15—C16−0.3 (2)
C2—C3—C4—C50.98 (19)C7—N2—C16—C170.73 (17)
C3—C4—C5—C6−1.1 (2)C7—N2—C16—C15−178.36 (11)
C4—C5—C6—C1−0.1 (2)C14—C15—C16—N2179.33 (12)
C2—C1—C6—C51.47 (18)C14—C15—C16—C170.24 (19)
C7—C1—C6—C5−178.75 (11)N2—C16—C17—C12−179.29 (10)
C16—N2—C7—N1−0.21 (18)C15—C16—C17—C12−0.20 (18)
C16—N2—C7—C1179.80 (10)N2—C16—C17—C8−0.99 (17)
C8—N1—C7—N2−0.03 (18)C15—C16—C17—C8178.10 (11)
C8—N1—C7—C1179.96 (10)C13—C12—C17—C160.24 (18)
C2—C1—C7—N22.97 (17)C11—C12—C17—C16178.45 (10)
C6—C1—C7—N2−176.80 (11)C13—C12—C17—C8−177.98 (11)
C2—C1—C7—N1−177.02 (10)C11—C12—C17—C80.23 (18)
C6—C1—C7—N13.21 (16)N1—C8—C17—C160.77 (17)
C7—N1—C8—C17−0.26 (17)C9—C8—C17—C16−178.10 (11)
C7—N1—C8—C9178.60 (11)N1—C8—C17—C12179.04 (11)
N1—C8—C9—C10−178.90 (12)C9—C8—C17—C120.17 (17)
C17—C8—C9—C100.01 (19)
D—H···AD—HH···AD···AD—H···A
O2—H1O2···N20.91 (2)1.73 (2)2.5583 (15)151 (2)
C15—H15···O2i0.970 (18)2.437 (18)3.3686 (17)160.8 (12)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O2—H1O2⋯N20.91 (2)1.73 (2)2.5583 (15)151 (2)
C15—H15⋯O2i0.970 (18)2.437 (18)3.3686 (17)160.8 (12)

Symmetry code: (i) .

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