Literature DB >> 21522452

1-[(4-tert-Butyl-phen-yl)sulfon-yl]-1H-benzimidazole.

K B Abdireymov, N S Mukhamedov, R Ya Okmanov, M J Ayimbetov, Kh M Shakhidoyatov.   

Abstract

The title compound, C(17)H(18)N(2)O(2)S, was synthesized by aryl-sulfonyl-ation of 1-hy-droxy-methyl-1H-benzimidazole in the presence of triethyl-amine. The benzimidazole and benzene rings form a dihedral angle of 84.1 (1)°. The tert-butyl group was treated as rotationally disordered over two orientations in a 0.51 (2):0.49 (2) ratio. In the crystal, weak inter-molecular C-H⋯O hydrogen bonds link the mol-ecules into chains propagating in [010].

Entities:  

Year:  2011        PMID: 21522452      PMCID: PMC3051969          DOI: 10.1107/S1600536811005551

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological and pharmaceutical properties of benzimidazole derivatives, see: Koči et al. (2002 ▶); Matsuno et al. (2000 ▶); Garuti et al. (1999 ▶). For related structures, see: Rashid et al. (2006 ▶, 2007 ▶). For the aryl­sulfonyl­ation of benzimidazole derivatives, see: Abdireimov et al. (2010 ▶).

Experimental

Crystal data

C17H18N2O2S M = 314.39 Monoclinic, a = 12.142 (2) Å b = 8.8940 (18) Å c = 15.324 (3) Å β = 96.78 (3)° V = 1643.3 (6) Å3 Z = 4 Cu Kα radiation μ = 1.82 mm−1 T = 302 K 0.60 × 0.25 × 0.22 mm

Data collection

Stoe Stadi-4 four-circle diffractometer Absorption correction: ψ scan (North et al., 1968 ▶) T min = 0.609, T max = 0.670 2727 measured reflections 2429 independent reflections 1813 reflections with I > 2σ(I) R int = 0.044 θmax = 60.0° 3 standard reflections every 60 min intensity decay: 5.2%

Refinement

R[F 2 > 2σ(F 2)] = 0.058 wR(F 2) = 0.150 S = 1.12 2429 reflections 234 parameters H-atom parameters constrained Δρmax = 0.15 e Å−3 Δρmin = −0.27 e Å−3 Data collection: STADI4 (Stoe & Cie, 1997 ▶); cell refinement: STADI4; data reduction: X-RED (Stoe & Cie, 1997 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: XP (Bruker, 1998 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536811005551/cv5052sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536811005551/cv5052Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C17H18N2O2SF(000) = 664
Mr = 314.39Dx = 1.271 Mg m3
Monoclinic, P21/nMelting point: 395(1) K
Hall symbol: -P 2ynCu Kα radiation, λ = 1.54184 Å
a = 12.142 (2) ÅCell parameters from 14 reflections
b = 8.8940 (18) Åθ = 10–20°
c = 15.324 (3) ŵ = 1.82 mm1
β = 96.78 (3)°T = 302 K
V = 1643.3 (6) Å3Prism, colourless
Z = 40.60 × 0.25 × 0.22 mm
Stoe Stadi-4 four-circle diffractometer1813 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.044
graphiteθmax = 60.0°, θmin = 4.4°
Scan width (ω) = 1.56 – 1.80, scan ratio 2θ:ω = 1.00 I(Net) and sigma(I) calculated according to Blessing (1987)h = −13→13
Absorption correction: ψ scan (North et al., 1968)k = 0→9
Tmin = 0.609, Tmax = 0.670l = 0→17
2727 measured reflections3 standard reflections every 60 min
2429 independent reflections intensity decay: 5.2%
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.058H-atom parameters constrained
wR(F2) = 0.150w = 1/[σ2(Fo2) + (0.0478P)2 + 1.1618P] where P = (Fo2 + 2Fc2)/3
S = 1.12(Δ/σ)max < 0.001
2429 reflectionsΔρmax = 0.15 e Å3
234 parametersΔρmin = −0.27 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.0054 (4)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
S10.15656 (9)0.56256 (13)0.30146 (7)0.0817 (4)
O10.2287 (3)0.6147 (4)0.24143 (18)0.1059 (11)
O20.0939 (3)0.4275 (3)0.2866 (2)0.1116 (11)
N10.2366 (2)0.5318 (4)0.39620 (19)0.0695 (8)
N30.2705 (3)0.4528 (4)0.5352 (3)0.0882 (11)
C20.2092 (4)0.4382 (5)0.4623 (3)0.0855 (12)
H2B0.15090.37000.45420.103*
C3A0.3453 (3)0.5650 (4)0.5199 (3)0.0678 (10)
C40.4313 (4)0.6232 (5)0.5767 (3)0.0857 (12)
H4A0.44600.58750.63400.103*
C50.4939 (4)0.7339 (6)0.5467 (4)0.0924 (13)
H5A0.55140.77570.58450.111*
C60.4741 (4)0.7862 (5)0.4611 (4)0.0907 (13)
H6A0.51890.86180.44250.109*
C70.3901 (3)0.7286 (4)0.4032 (3)0.0764 (11)
H7A0.37730.76250.34550.092*
C7A0.3259 (3)0.6188 (4)0.4344 (2)0.0621 (9)
C80.0676 (3)0.7078 (4)0.3232 (2)0.0593 (9)
C9−0.0313 (3)0.6758 (4)0.3528 (2)0.0639 (9)
H9A−0.05070.57660.36270.077*
C10−0.1020 (3)0.7904 (4)0.3678 (2)0.0635 (9)
H10A−0.16960.76740.38750.076*
C11−0.0760 (3)0.9392 (4)0.3545 (2)0.0542 (8)
C120.0251 (3)0.9681 (4)0.3244 (2)0.0673 (10)
H12A0.04501.06700.31460.081*
C130.0966 (3)0.8541 (4)0.3086 (2)0.0672 (10)
H13A0.16400.87590.28830.081*
C14−0.1562 (3)1.0652 (5)0.3703 (3)0.0709 (10)
C15−0.2610 (16)1.044 (3)0.3059 (11)0.131 (7)0.51 (2)
H15A−0.31001.12750.31040.197*0.51 (2)
H15B−0.29740.95260.31960.197*0.51 (2)
H15C−0.24131.03820.24710.197*0.51 (2)
C16−0.113 (2)1.2215 (18)0.361 (3)0.234 (18)0.51 (2)
H16A−0.04401.23260.39850.351*0.51 (2)
H16B−0.16581.29260.37880.351*0.51 (2)
H16C−0.10151.23940.30150.351*0.51 (2)
C17−0.1958 (18)1.047 (2)0.4597 (8)0.142 (10)0.51 (2)
H17A−0.13301.04470.50410.214*0.51 (2)
H17B−0.23670.95490.46130.214*0.51 (2)
H17C−0.24281.13020.47060.214*0.51 (2)
C15A−0.0948 (12)1.1855 (16)0.4249 (10)0.093 (5)0.49 (2)
H15D−0.14691.25440.44540.140*0.49 (2)
H15E−0.04701.23860.38990.140*0.49 (2)
H15F−0.05111.14030.47430.140*0.49 (2)
C16A−0.248 (2)1.013 (2)0.415 (3)0.233 (19)0.49 (2)
H16D−0.29631.09620.42390.350*0.49 (2)
H16E−0.22040.97060.47080.350*0.49 (2)
H16F−0.28940.93800.37970.350*0.49 (2)
C17A−0.192 (3)1.141 (3)0.2816 (11)0.150 (10)0.49 (2)
H17D−0.24651.21740.28910.226*0.49 (2)
H17E−0.22401.06760.24030.226*0.49 (2)
H17F−0.12901.18650.26000.226*0.49 (2)
U11U22U33U12U13U23
S10.0854 (7)0.0894 (8)0.0698 (6)0.0210 (6)0.0072 (5)−0.0219 (6)
O10.112 (2)0.145 (3)0.0660 (17)0.044 (2)0.0306 (16)−0.0054 (18)
O20.116 (2)0.087 (2)0.126 (3)0.0087 (19)−0.012 (2)−0.0552 (19)
N10.0673 (19)0.069 (2)0.0716 (19)0.0118 (16)0.0044 (16)0.0041 (16)
N30.083 (2)0.086 (3)0.096 (3)0.001 (2)0.014 (2)0.026 (2)
C20.080 (3)0.067 (3)0.112 (4)0.000 (2)0.020 (3)0.016 (3)
C3A0.061 (2)0.068 (2)0.075 (2)0.0119 (19)0.0132 (19)0.008 (2)
C40.082 (3)0.095 (3)0.079 (3)0.012 (3)0.007 (2)0.006 (2)
C50.071 (3)0.094 (3)0.111 (4)0.004 (3)0.003 (3)−0.015 (3)
C60.073 (3)0.075 (3)0.128 (4)−0.003 (2)0.023 (3)0.006 (3)
C70.075 (3)0.070 (3)0.087 (3)0.012 (2)0.024 (2)0.019 (2)
C7A0.059 (2)0.059 (2)0.070 (2)0.0141 (18)0.0141 (17)0.0043 (18)
C80.057 (2)0.070 (2)0.0502 (19)0.0035 (18)0.0041 (15)−0.0080 (17)
C90.060 (2)0.058 (2)0.071 (2)−0.0046 (18)0.0000 (18)−0.0060 (18)
C100.050 (2)0.071 (2)0.069 (2)−0.0058 (18)0.0079 (16)−0.0093 (19)
C110.0482 (18)0.062 (2)0.0502 (18)−0.0012 (16)−0.0024 (14)−0.0048 (16)
C120.067 (2)0.059 (2)0.076 (2)−0.0038 (19)0.0100 (19)0.0078 (19)
C130.058 (2)0.081 (3)0.065 (2)−0.002 (2)0.0149 (17)0.005 (2)
C140.063 (2)0.074 (3)0.074 (2)0.011 (2)0.0002 (18)−0.006 (2)
C150.100 (10)0.177 (19)0.106 (11)0.076 (11)−0.037 (8)−0.032 (11)
C160.17 (2)0.069 (9)0.49 (6)0.027 (10)0.14 (3)0.05 (2)
C170.20 (2)0.153 (18)0.071 (8)0.102 (16)0.023 (8)−0.007 (8)
C15A0.095 (7)0.057 (8)0.122 (9)0.014 (7)−0.010 (7)−0.037 (7)
C16A0.157 (18)0.104 (11)0.48 (5)−0.015 (13)0.23 (3)−0.07 (2)
C17A0.18 (2)0.153 (18)0.105 (10)0.096 (16)−0.050 (13)−0.022 (11)
S1—O11.421 (3)C12—C131.375 (5)
S1—O21.426 (3)C12—H12A0.9300
S1—N11.671 (3)C13—H13A0.9300
S1—C81.742 (3)C14—C16A1.455 (17)
N1—C21.381 (5)C14—C161.498 (17)
N1—C7A1.402 (5)C14—C15A1.501 (12)
N3—C21.274 (5)C14—C171.513 (15)
N3—C3A1.387 (5)C14—C151.527 (15)
C2—H2B0.9300C14—C17A1.535 (18)
C3A—C41.379 (5)C15—H15A0.9600
C3A—C7A1.389 (5)C15—H15B0.9600
C4—C51.357 (6)C15—H15C0.9600
C4—H4A0.9300C16—H16A0.9600
C5—C61.386 (6)C16—H16B0.9600
C5—H5A0.9300C16—H16C0.9600
C6—C71.369 (6)C17—H17A0.9600
C6—H6A0.9300C17—H17B0.9600
C7—C7A1.371 (5)C17—H17C0.9600
C7—H7A0.9300C15A—H15D0.9600
C8—C91.363 (5)C15A—H15E0.9600
C8—C131.373 (5)C15A—H15F0.9600
C9—C101.369 (5)C16A—H16D0.9600
C9—H9A0.9300C16A—H16E0.9600
C10—C111.381 (5)C16A—H16F0.9600
C10—H10A0.9300C17A—H17D0.9600
C11—C121.385 (5)C17A—H17E0.9600
C11—C141.523 (5)C17A—H17F0.9600
O1—S1—O2122.0 (2)C13—C12—H12A119.2
O1—S1—N1106.03 (18)C11—C12—H12A119.2
O2—S1—N1104.21 (19)C8—C13—C12119.4 (3)
O1—S1—C8109.00 (19)C8—C13—H13A120.3
O2—S1—C8108.89 (18)C12—C13—H13A120.3
N1—S1—C8105.39 (15)C16A—C14—C15A109.0 (13)
C2—N1—C7A105.5 (3)C16—C14—C17109.4 (14)
C2—N1—S1124.7 (3)C16A—C14—C11112.5 (8)
C7A—N1—S1127.9 (3)C16—C14—C11115.5 (8)
C2—N3—C3A104.6 (4)C15A—C14—C11109.1 (6)
N3—C2—N1114.5 (4)C17—C14—C11110.1 (7)
N3—C2—H2B122.7C16—C14—C15109.3 (12)
N1—C2—H2B122.7C17—C14—C15104.1 (10)
C4—C3A—N3128.7 (4)C11—C14—C15107.8 (7)
C4—C3A—C7A119.9 (4)C16A—C14—C17A113.7 (12)
N3—C3A—C7A111.4 (4)C15A—C14—C17A104.5 (10)
C5—C4—C3A118.1 (4)C11—C14—C17A107.7 (7)
C5—C4—H4A120.9C14—C15—H15A109.5
C3A—C4—H4A120.9C14—C15—H15B109.5
C4—C5—C6121.5 (4)C14—C15—H15C109.5
C4—C5—H5A119.2C14—C16—H16A109.5
C6—C5—H5A119.2C14—C16—H16B109.5
C7—C6—C5121.4 (4)C14—C16—H16C109.5
C7—C6—H6A119.3C14—C17—H17A109.5
C5—C6—H6A119.3C14—C17—H17B109.5
C6—C7—C7A116.8 (4)C14—C17—H17C109.5
C6—C7—H7A121.6C14—C15A—H15D109.5
C7A—C7—H7A121.6C14—C15A—H15E109.5
C7—C7A—C3A122.3 (4)H15D—C15A—H15E109.5
C7—C7A—N1133.7 (4)C14—C15A—H15F109.5
C3A—C7A—N1104.0 (3)H15D—C15A—H15F109.5
C9—C8—C13120.4 (3)H15E—C15A—H15F109.5
C9—C8—S1120.0 (3)C14—C16A—H16D109.5
C13—C8—S1119.7 (3)C14—C16A—H16E109.5
C8—C9—C10119.6 (3)H16D—C16A—H16E109.5
C8—C9—H9A120.2C14—C16A—H16F109.5
C10—C9—H9A120.2H16D—C16A—H16F109.5
C9—C10—C11122.0 (3)H16E—C16A—H16F109.5
C9—C10—H10A119.0C14—C17A—H17D109.5
C11—C10—H10A119.0C14—C17A—H17E109.5
C10—C11—C12117.0 (3)H17D—C17A—H17E109.5
C10—C11—C14121.3 (3)C14—C17A—H17F109.5
C12—C11—C14121.7 (3)H17D—C17A—H17F109.5
C13—C12—C11121.7 (3)H17E—C17A—H17F109.5
O1—S1—N1—C2−158.3 (3)O2—S1—C8—C922.1 (3)
O2—S1—N1—C2−28.4 (4)N1—S1—C8—C9−89.2 (3)
C8—S1—N1—C286.2 (3)O1—S1—C8—C13−21.3 (3)
O1—S1—N1—C7A39.6 (4)O2—S1—C8—C13−156.6 (3)
O2—S1—N1—C7A169.5 (3)N1—S1—C8—C1392.1 (3)
C8—S1—N1—C7A−75.9 (3)C13—C8—C9—C100.2 (5)
C3A—N3—C2—N10.6 (5)S1—C8—C9—C10−178.5 (3)
C7A—N1—C2—N3−1.4 (5)C8—C9—C10—C11−0.5 (5)
S1—N1—C2—N3−166.9 (3)C9—C10—C11—C120.5 (5)
C2—N3—C3A—C4−178.8 (4)C9—C10—C11—C14179.2 (3)
C2—N3—C3A—C7A0.5 (5)C10—C11—C12—C13−0.2 (5)
N3—C3A—C4—C5−179.9 (4)C14—C11—C12—C13−178.8 (3)
C7A—C3A—C4—C50.8 (6)C9—C8—C13—C120.1 (5)
C3A—C4—C5—C6−1.2 (7)S1—C8—C13—C12178.8 (3)
C4—C5—C6—C70.3 (7)C11—C12—C13—C8−0.1 (5)
C5—C6—C7—C7A0.9 (6)C10—C11—C14—C16A10.7 (19)
C6—C7—C7A—C3A−1.2 (5)C12—C11—C14—C16A−170.7 (19)
C6—C7—C7A—N1−178.1 (4)C10—C11—C14—C16174 (2)
C4—C3A—C7A—C70.4 (6)C12—C11—C14—C16−7(2)
N3—C3A—C7A—C7−179.0 (3)C10—C11—C14—C15A131.8 (8)
C4—C3A—C7A—N1178.0 (3)C12—C11—C14—C15A−49.7 (8)
N3—C3A—C7A—N1−1.3 (4)C10—C11—C14—C1749.9 (10)
C2—N1—C7A—C7178.8 (4)C12—C11—C14—C17−131.5 (10)
S1—N1—C7A—C7−16.3 (6)C10—C11—C14—C15−63.0 (13)
C2—N1—C7A—C3A1.6 (4)C12—C11—C14—C15115.6 (13)
S1—N1—C7A—C3A166.4 (3)C10—C11—C14—C17A−115.3 (15)
O1—S1—C8—C9157.3 (3)C12—C11—C14—C17A63.2 (15)
D—H···AD—HH···AD···AD—H···A
C7—H7A···O2i0.932.563.430 (5)156
C13—H13A···O1i0.932.563.292 (5)136
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C7—H7A⋯O2i0.932.563.430 (5)156
C13—H13A⋯O1i0.932.563.292 (5)136

Symmetry code: (i) .

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