Literature DB >> 21522451

2-Chloro-1-[4-(2-fluoro-benz-yl)piperazin-1-yl]ethanone.

Cunlong Zhang, Xin Zhai, Furen Wan, Ping Gong, Yuyang Jiang.   

Abstract

In the title compound, C(13)H(16)ClFN(2)O, the piperazine ring is flanked by 1-(2-fluoro-benz-yl)piperazine and adopts a chair conformation. The dihedral angle between the fluoro-phenyl ring and the four planar C atoms (r.m.s. = 0.0055 Å) of the piperazine chair is 78.27 (7)°, whereas the dihedral angle between the four planar C atoms of the piperazine chair and the ethanone plane is 55.21 (9) Å; the Cl atom displaced by1.589 (2) Å out of the plane.

Entities:  

Year:  2011        PMID: 21522451      PMCID: PMC3052134          DOI: 10.1107/S1600536811006180

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the synthesis of related compounds, see: Contreras et al. (2001 ▶); Capuano et al. (2002 ▶). For their use as inter­mediates in the synthesis of anti-inflammatory agents or CCR1 antagonists, see: Rolland & Duhault (1989 ▶); Kaufmann (2005 ▶); Tanikawa et al. (1995 ▶); Xie et al. (2007 ▶).

Experimental

Crystal data

C13H16ClFN2O M = 270.73 Orthorhombic, a = 7.9350 (5) Å b = 8.4610 (4) Å c = 19.0040 (11) Å V = 1275.89 (12) Å3 Z = 4 Mo Kα radiation μ = 0.30 mm−1 T = 291 K 0.30 × 0.30 × 0.20 mm

Data collection

Bruker APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2001 ▶) T min = 0.566, T max = 0.716 12886 measured reflections 3001 independent reflections 2550 reflections with I > 2σ(I) R int = 0.033

Refinement

R[F 2 > 2σ(F 2)] = 0.035 wR(F 2) = 0.085 S = 1.01 3001 reflections 165 parameters H-atom parameters constrained Δρmax = 0.33 e Å−3 Δρmin = −0.18 e Å−3 Absolute structure: Flack (1983 ▶), 1255 Friedel pairs Flack parameter: 0.03 (7) Data collection: APEX2 (Bruker, 2003 ▶); cell refinement: SAINT (Bruker, 2001 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: DIAMOND (Brandenburg, 1999) ▶; software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536811006180/si2316sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536811006180/si2316Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C13H16ClFN2OF(000) = 568
Mr = 270.73Dx = 1.409 Mg m3
Orthorhombic, P212121Mo Kα radiation, λ = 0.71069 Å
Hall symbol: P 2ac 2abCell parameters from 25 reflections
a = 7.9350 (5) Åθ = 7.5–15°
b = 8.4610 (4) ŵ = 0.30 mm1
c = 19.0040 (11) ÅT = 291 K
V = 1275.89 (12) Å3Block, colorless
Z = 40.30 × 0.30 × 0.20 mm
Bruker APEXII CCD diffractometer3001 independent reflections
Radiation source: fine-focus sealed tube2550 reflections with I > 2σ(I)
graphiteRint = 0.033
ω scansθmax = 28.4°, θmin = 3.2°
Absorption correction: multi-scan (SADABS; Bruker, 2001)h = −10→10
Tmin = 0.566, Tmax = 0.716k = −10→10
12886 measured reflectionsl = −25→25
Refinement on F2Hydrogen site location: inferred from neighbouring sites
Least-squares matrix: fullH-atom parameters constrained
R[F2 > 2σ(F2)] = 0.035w = 1/[σ2(Fo2) + (0.028P)2 + 0.4P] where P = (Fo2 + 2Fc2)/3
wR(F2) = 0.085(Δ/σ)max < 0.001
S = 1.01Δρmax = 0.33 e Å3
3001 reflectionsΔρmin = −0.18 e Å3
165 parametersExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
0 restraintsExtinction coefficient: 0.077 (3)
Primary atom site location: structure-invariant direct methodsAbsolute structure: Flack (1983), 1255 Friedel pairs
Secondary atom site location: difference Fourier mapFlack parameter: 0.03 (7)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O11.51486 (16)0.40256 (17)0.67832 (8)0.0512 (3)
Cl11.23456 (9)0.09826 (6)0.64207 (3)0.06647 (19)
F10.6313 (2)0.88072 (19)0.64912 (8)0.0801 (4)
N10.96049 (18)0.62572 (16)0.64509 (8)0.0378 (3)
N21.2433 (2)0.46187 (17)0.70180 (8)0.0437 (4)
C10.8356 (2)0.8253 (2)0.56706 (9)0.0415 (4)
C20.7317 (3)0.9332 (2)0.59859 (10)0.0492 (5)
C30.7224 (3)1.0901 (3)0.58058 (12)0.0622 (6)
H30.64971.15820.60410.075*
C40.8215 (3)1.1433 (3)0.52783 (12)0.0623 (6)
H40.81771.24910.51460.075*
C50.9276 (3)1.0405 (3)0.49380 (12)0.0588 (6)
H50.99601.07660.45740.071*
C60.9328 (3)0.8832 (3)0.51363 (10)0.0524 (5)
H61.00470.81480.48980.063*
C70.8427 (2)0.6546 (2)0.58860 (10)0.0459 (4)
H7A0.73120.62110.60340.055*
H7B0.87460.59120.54820.055*
C81.1333 (2)0.6613 (2)0.62433 (10)0.0424 (4)
H8A1.14090.77230.61180.051*
H8B1.16130.60000.58280.051*
C91.2590 (2)0.6266 (2)0.68052 (10)0.0459 (4)
H9A1.37190.64640.66310.055*
H9B1.23950.69510.72070.055*
C101.0718 (2)0.4225 (3)0.72213 (11)0.0500 (5)
H10A1.04130.48210.76380.060*
H10B1.06550.31090.73360.060*
C110.9506 (2)0.4583 (2)0.66487 (11)0.0460 (5)
H11A0.97580.39310.62420.055*
H11B0.83720.43370.68040.055*
C121.3729 (2)0.3613 (2)0.69620 (9)0.0388 (4)
C131.3417 (3)0.1882 (2)0.71208 (10)0.0476 (5)
H13A1.27530.17870.75470.057*
H13B1.44840.13510.71970.057*
U11U22U33U12U13U23
O10.0326 (7)0.0537 (8)0.0671 (9)0.0000 (6)−0.0001 (6)0.0034 (7)
Cl10.0760 (4)0.0506 (3)0.0729 (3)−0.0109 (3)−0.0059 (3)−0.0099 (3)
F10.0805 (10)0.0910 (10)0.0688 (8)0.0264 (8)0.0272 (8)0.0187 (8)
N10.0326 (7)0.0339 (7)0.0471 (8)0.0024 (6)−0.0027 (6)0.0003 (6)
N20.0343 (8)0.0416 (7)0.0552 (9)0.0042 (7)0.0010 (8)0.0090 (6)
C10.0373 (9)0.0480 (10)0.0393 (9)0.0030 (8)−0.0091 (7)−0.0007 (8)
C20.0465 (11)0.0587 (12)0.0423 (9)0.0063 (10)−0.0002 (9)0.0045 (8)
C30.0751 (15)0.0544 (11)0.0573 (12)0.0190 (12)0.0006 (12)−0.0014 (10)
C40.0801 (17)0.0479 (12)0.0590 (13)−0.0008 (11)−0.0167 (11)0.0099 (10)
C50.0596 (14)0.0677 (14)0.0492 (11)−0.0068 (11)−0.0017 (10)0.0128 (10)
C60.0502 (11)0.0624 (13)0.0447 (10)0.0049 (10)−0.0006 (9)−0.0006 (10)
C70.0400 (10)0.0464 (10)0.0512 (10)−0.0017 (8)−0.0089 (9)−0.0047 (9)
C80.0363 (9)0.0337 (8)0.0570 (11)−0.0023 (7)−0.0006 (8)0.0053 (8)
C90.0370 (9)0.0362 (9)0.0645 (11)−0.0006 (8)−0.0076 (9)0.0016 (8)
C100.0393 (11)0.0497 (11)0.0610 (12)0.0068 (8)0.0094 (9)0.0158 (10)
C110.0328 (9)0.0397 (9)0.0656 (13)−0.0015 (8)0.0056 (9)0.0061 (9)
C120.0364 (9)0.0433 (9)0.0366 (8)0.0023 (8)−0.0050 (7)−0.0010 (7)
C130.0479 (11)0.0442 (11)0.0506 (11)0.0067 (9)−0.0049 (9)0.0071 (9)
O1—C121.228 (2)C5—H50.9300
Cl1—C131.753 (2)C6—H60.9300
F1—C21.324 (2)C7—H7A0.9700
N1—C71.444 (2)C7—H7B0.9700
N1—C81.459 (2)C8—C91.490 (3)
N1—C111.467 (2)C8—H8A0.9700
N2—C121.339 (2)C8—H8B0.9700
N2—C101.454 (2)C9—H9A0.9700
N2—C91.457 (2)C9—H9B0.9700
C1—C61.366 (3)C10—C111.483 (3)
C1—C21.369 (3)C10—H10A0.9700
C1—C71.502 (3)C10—H10B0.9700
C2—C31.373 (3)C11—H11A0.9700
C3—C41.351 (3)C11—H11B0.9700
C3—H30.9300C12—C131.515 (3)
C4—C51.373 (3)C13—H13A0.9700
C4—H40.9300C13—H13B0.9700
C5—C61.384 (3)
C7—N1—C8111.87 (15)C9—C8—H8A108.9
C7—N1—C11108.62 (14)N1—C8—H8B108.9
C8—N1—C11108.59 (13)C9—C8—H8B108.9
C12—N2—C10126.45 (15)H8A—C8—H8B107.7
C12—N2—C9121.38 (16)N2—C9—C8109.27 (15)
C10—N2—C9111.92 (15)N2—C9—H9A109.8
C6—C1—C2115.21 (18)C8—C9—H9A109.8
C6—C1—C7121.77 (18)N2—C9—H9B109.8
C2—C1—C7123.02 (18)C8—C9—H9B109.8
F1—C2—C1117.11 (18)H9A—C9—H9B108.3
F1—C2—C3118.22 (19)N2—C10—C11111.40 (16)
C1—C2—C3124.7 (2)N2—C10—H10A109.3
C4—C3—C2118.4 (2)C11—C10—H10A109.3
C4—C3—H3120.8N2—C10—H10B109.3
C2—C3—H3120.8C11—C10—H10B109.3
C3—C4—C5119.7 (2)H10A—C10—H10B108.0
C3—C4—H4120.2N1—C11—C10110.55 (16)
C5—C4—H4120.2N1—C11—H11A109.5
C4—C5—C6120.0 (2)C10—C11—H11A109.5
C4—C5—H5120.0N1—C11—H11B109.5
C6—C5—H5120.0C10—C11—H11B109.5
C1—C6—C5122.1 (2)H11A—C11—H11B108.1
C1—C6—H6119.0O1—C12—N2123.07 (18)
C5—C6—H6119.0O1—C12—C13118.68 (17)
N1—C7—C1112.92 (15)N2—C12—C13118.24 (17)
N1—C7—H7A109.0C12—C13—Cl1110.34 (13)
C1—C7—H7A109.0C12—C13—H13A109.6
N1—C7—H7B109.0Cl1—C13—H13A109.6
C1—C7—H7B109.0C12—C13—H13B109.6
H7A—C7—H7B107.8Cl1—C13—H13B109.6
N1—C8—C9113.25 (16)H13A—C13—H13B108.1
N1—C8—H8A108.9
C6—C1—C2—F1177.86 (18)C11—N1—C8—C9−57.8 (2)
C7—C1—C2—F1−1.6 (3)C12—N2—C9—C8120.59 (19)
C6—C1—C2—C3−0.9 (3)C10—N2—C9—C8−54.0 (2)
C7—C1—C2—C3179.7 (2)N1—C8—C9—N256.1 (2)
F1—C2—C3—C4−178.3 (2)C12—N2—C10—C11−118.1 (2)
C1—C2—C3—C40.4 (3)C9—N2—C10—C1156.2 (2)
C2—C3—C4—C50.1 (3)C7—N1—C11—C10179.10 (16)
C3—C4—C5—C60.0 (3)C8—N1—C11—C1057.2 (2)
C2—C1—C6—C50.9 (3)N2—C10—C11—N1−57.6 (2)
C7—C1—C6—C5−179.60 (19)C10—N2—C12—O1179.59 (18)
C4—C5—C6—C1−0.5 (3)C9—N2—C12—O15.8 (3)
C8—N1—C7—C1−63.4 (2)C10—N2—C12—C130.2 (3)
C11—N1—C7—C1176.72 (16)C9—N2—C12—C13−173.64 (16)
C6—C1—C7—N193.1 (2)O1—C12—C13—Cl1−103.48 (18)
C2—C1—C7—N1−87.4 (2)N2—C12—C13—Cl175.97 (19)
C7—N1—C8—C9−177.68 (15)
  3 in total

1.  Structure-activity relationships of novel, highly potent, selective, and orally active CCR1 antagonists.

Authors:  Yun Feng Xie; Kirk Lake; Kathleen Ligsay; Mallareddy Komandla; Ila Sircar; Gobi Nagarajan; Jian Li; Kui Xu; Jason Parise; Lisa Schneider; Ding Huang; Juping Liu; Kevin Dines; Naoki Sakurai; Miguel Barbosa; Rick Jack
Journal:  Bioorg Med Chem Lett       Date:  2007-04-05       Impact factor: 2.823

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Design, synthesis, and structure-activity relationships of a series of 3-[2-(1-benzylpiperidin-4-yl)ethylamino]pyridazine derivatives as acetylcholinesterase inhibitors.

Authors:  J M Contreras; I Parrot; W Sippl; Y M Rival; C G Wermuth
Journal:  J Med Chem       Date:  2001-08-16       Impact factor: 7.446

  3 in total

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