Literature DB >> 21522447

3-Benzyl-5,7-dimeth-oxy-chroman-4-ol.

Mahidansha M Shaikh, Glenn E M Maguire, Hendrik G Kruger, Karen du Toit.   

Abstract

In the crystal structure of the title compound, C(18)H(20)O(4), O-H⋯O hydrogen bonds connect the mol-ecules in parallel layers along the b axis.

Entities:  

Year:  2011        PMID: 21522447      PMCID: PMC3052041          DOI: 10.1107/S1600536811002066

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For analogous structures, see Koch et al. (1994 ▶); Porter et al. (1985 ▶). For the biological activity of naturally ocurring homoisoflavanones that possess a 3-benzyl-substituted chroman ring system, see: Zhang et al. (2008 ▶). For our work on the synthesis and characterization of natural products from this family of compounds in the search for new medical agents, see: Shaikh et al. (2011 ▶).

Experimental

Crystal data

C18H20O4 M = 300.34 Monoclinic, a = 9.870 (5) Å b = 11.211 (6) Å c = 14.603 (7) Å β = 107.072 (7)° V = 1544.6 (13) Å3 Z = 4 Mo Kα radiation μ = 0.09 mm−1 T = 100 K 0.37 × 0.24 × 0.20 mm

Data collection

Bruker Kappa DUO APEXII diffractometer 12055 measured reflections 3882 independent reflections 3369 reflections with I > 2σ(I) R int = 0.021

Refinement

R[F 2 > 2σ(F 2)] = 0.037 wR(F 2) = 0.100 S = 1.04 3882 reflections 203 parameters 1 restraint H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.38 e Å−3 Δρmin = −0.21 e Å−3 Data collection: APEX2 (Bruker, 2006 ▶); cell refinement: SAINT (Bruker, 2006 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: OLEX2 (Dolomanov et al., 2009 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536811002066/pb2047sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536811002066/pb2047Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C18H20O41544.6(13)
Mr = 300.34Dx = 1.292 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
a = 9.870 (5) ÅCell parameters from 12055 reflections
b = 11.211 (6) Åθ = 2.2–28.5°
c = 14.603 (7) ŵ = 0.09 mm1
β = 107.072 (7)°T = 100 K
V = 1544.6 (13) Å3Needle, colourless
Z = 40.37 × 0.24 × 0.20 mm
F(000) = 640
Bruker Kappa DUO APEXII diffractometer3369 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.021
graphiteθmax = 28.5°, θmin = 2.2°
0.5° φ scans and ω scansh = −12→13
12055 measured reflectionsk = −15→14
3882 independent reflectionsl = −19→9
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.037Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.100H atoms treated by a mixture of independent and constrained refinement
S = 1.04w = 1/[σ2(Fo2) + (0.0499P)2 + 0.5109P] where P = (Fo2 + 2Fc2)/3
3882 reflections(Δ/σ)max < 0.001
203 parametersΔρmax = 0.38 e Å3
1 restraintΔρmin = −0.21 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O1−0.00588 (8)−0.11619 (7)0.23516 (5)0.01815 (17)
O20.16950 (8)0.17225 (7)0.31067 (5)0.01963 (17)
H2O0.1135 (16)0.2376 (12)0.2790 (11)0.046 (5)*
O3−0.32946 (8)0.01390 (7)−0.06048 (5)0.02129 (18)
O40.08477 (8)0.24224 (7)0.08733 (5)0.01719 (16)
C10.10969 (11)−0.08620 (10)0.31876 (7)0.0177 (2)
H1A0.1427−0.15920.35690.021*
H1B0.0757−0.02950.35910.021*
C20.23245 (10)−0.03074 (9)0.29118 (7)0.0150 (2)
H20.2580−0.08550.24480.018*
C30.18241 (10)0.08729 (9)0.23985 (7)0.01346 (19)
H30.25480.11630.20940.016*
C40.04340 (10)0.06766 (9)0.16310 (7)0.01331 (19)
C5−0.04198 (10)−0.03082 (9)0.16389 (7)0.0144 (2)
C6−0.16888 (11)−0.05346 (9)0.09140 (7)0.0165 (2)
H6−0.2252−0.12130.09420.020*
C7−0.20927 (10)0.02633 (10)0.01570 (7)0.0162 (2)
C8−0.12787 (11)0.12749 (9)0.01173 (7)0.0163 (2)
H8−0.15760.1821−0.04000.020*
C9−0.00293 (10)0.14667 (9)0.08470 (7)0.01417 (19)
C100.36316 (11)−0.01853 (10)0.37985 (7)0.0185 (2)
H10A0.34080.03740.42590.022*
H10B0.3851−0.09720.41160.022*
C110.49155 (11)0.02629 (10)0.35418 (7)0.0177 (2)
C120.58336 (12)−0.05326 (11)0.32883 (8)0.0232 (2)
H120.5668−0.13660.33000.028*
C130.69930 (12)−0.01154 (14)0.30172 (9)0.0313 (3)
H130.7614−0.06660.28510.038*
C140.72403 (13)0.11021 (14)0.29902 (9)0.0343 (3)
H140.80240.13870.28000.041*
C150.63369 (13)0.18964 (13)0.32419 (9)0.0307 (3)
H150.65040.27300.32250.037*
C160.51859 (12)0.14850 (11)0.35193 (8)0.0221 (2)
H160.45780.20400.36950.027*
C17−0.40947 (12)−0.09390 (11)−0.06520 (8)0.0237 (2)
H17A−0.4920−0.0922−0.12230.036*
H17B−0.4413−0.1006−0.00790.036*
H17C−0.3497−0.1626−0.06870.036*
C180.05036 (12)0.31979 (10)0.00542 (8)0.0204 (2)
H18A0.12040.38410.01580.031*
H18B−0.04410.3540−0.00370.031*
H18C0.05120.2742−0.05160.031*
U11U22U33U12U13U23
O10.0173 (3)0.0177 (4)0.0169 (4)−0.0036 (3)0.0012 (3)0.0048 (3)
O20.0239 (4)0.0178 (4)0.0151 (3)0.0049 (3)0.0025 (3)−0.0040 (3)
O30.0182 (4)0.0241 (4)0.0173 (4)−0.0025 (3)−0.0014 (3)−0.0001 (3)
O40.0204 (4)0.0153 (4)0.0148 (3)−0.0021 (3)0.0037 (3)0.0037 (3)
C10.0165 (4)0.0200 (5)0.0151 (4)−0.0024 (4)0.0022 (4)0.0045 (4)
C20.0148 (4)0.0150 (5)0.0150 (4)0.0008 (4)0.0043 (4)0.0013 (4)
C30.0149 (4)0.0139 (5)0.0116 (4)−0.0004 (3)0.0039 (3)−0.0005 (3)
C40.0143 (4)0.0144 (5)0.0116 (4)0.0012 (4)0.0043 (3)−0.0006 (3)
C50.0158 (4)0.0149 (5)0.0132 (4)0.0018 (4)0.0056 (4)0.0012 (4)
C60.0154 (4)0.0171 (5)0.0172 (5)−0.0016 (4)0.0053 (4)−0.0005 (4)
C70.0146 (4)0.0198 (5)0.0132 (4)0.0010 (4)0.0028 (4)−0.0028 (4)
C80.0189 (5)0.0169 (5)0.0125 (4)0.0023 (4)0.0038 (4)0.0016 (4)
C90.0169 (4)0.0132 (4)0.0136 (4)0.0008 (4)0.0062 (4)−0.0006 (4)
C100.0165 (5)0.0206 (5)0.0169 (5)0.0002 (4)0.0025 (4)0.0045 (4)
C110.0146 (4)0.0221 (5)0.0133 (4)−0.0010 (4)−0.0009 (4)0.0021 (4)
C120.0199 (5)0.0253 (6)0.0217 (5)0.0031 (4)0.0020 (4)0.0013 (4)
C130.0180 (5)0.0516 (8)0.0235 (6)0.0070 (5)0.0047 (4)0.0035 (5)
C140.0173 (5)0.0596 (9)0.0227 (6)−0.0095 (6)0.0006 (4)0.0103 (6)
C150.0269 (6)0.0346 (7)0.0238 (6)−0.0143 (5)−0.0033 (5)0.0066 (5)
C160.0212 (5)0.0226 (6)0.0187 (5)−0.0031 (4)−0.0003 (4)0.0004 (4)
C170.0187 (5)0.0257 (6)0.0234 (5)−0.0043 (4)0.0011 (4)−0.0040 (4)
C180.0269 (5)0.0175 (5)0.0169 (5)−0.0009 (4)0.0066 (4)0.0051 (4)
O1—C51.3815 (13)C8—C91.3895 (14)
O1—C11.4445 (13)C8—H80.9500
O2—C31.4389 (13)C10—C111.5091 (15)
O2—H2O0.952 (9)C10—H10A0.9900
O3—C71.3746 (13)C10—H10B0.9900
O3—C171.4342 (15)C11—C121.3966 (16)
O4—C91.3708 (13)C11—C161.3981 (17)
O4—C181.4365 (13)C12—C131.3967 (18)
C1—C21.5176 (15)C12—H120.9500
C1—H1A0.9900C13—C141.389 (2)
C1—H1B0.9900C13—H130.9500
C2—C31.5296 (15)C14—C151.384 (2)
C2—C101.5423 (15)C14—H140.9500
C2—H21.0000C15—C161.3919 (17)
C3—C41.5113 (14)C15—H150.9500
C3—H31.0000C16—H160.9500
C4—C51.3911 (15)C17—H17A0.9800
C4—C91.4131 (14)C17—H17B0.9800
C5—C61.4053 (15)C17—H17C0.9800
C6—C71.3864 (15)C18—H18A0.9800
C6—H60.9500C18—H18B0.9800
C7—C81.4009 (16)C18—H18C0.9800
C5—O1—C1116.13 (8)O4—C9—C4114.56 (9)
C3—O2—H2O108.8 (10)C8—C9—C4121.84 (9)
C7—O3—C17117.16 (9)C11—C10—C2112.17 (9)
C9—O4—C18117.17 (8)C11—C10—H10A109.2
O1—C1—C2111.41 (9)C2—C10—H10A109.2
O1—C1—H1A109.3C11—C10—H10B109.2
C2—C1—H1A109.3C2—C10—H10B109.2
O1—C1—H1B109.3H10A—C10—H10B107.9
C2—C1—H1B109.3C12—C11—C16118.44 (11)
H1A—C1—H1B108.0C12—C11—C10120.71 (10)
C1—C2—C3108.44 (8)C16—C11—C10120.81 (10)
C1—C2—C10110.47 (9)C11—C12—C13120.71 (12)
C3—C2—C10113.88 (9)C11—C12—H12119.6
C1—C2—H2108.0C13—C12—H12119.6
C3—C2—H2108.0C14—C13—C12120.16 (12)
C10—C2—H2108.0C14—C13—H13119.9
O2—C3—C4112.14 (8)C12—C13—H13119.9
O2—C3—C2107.73 (8)C15—C14—C13119.50 (12)
C4—C3—C2109.25 (8)C15—C14—H14120.3
O2—C3—H3109.2C13—C14—H14120.3
C4—C3—H3109.2C14—C15—C16120.57 (13)
C2—C3—H3109.2C14—C15—H15119.7
C5—C4—C9116.84 (9)C16—C15—H15119.7
C5—C4—C3121.98 (9)C15—C16—C11120.62 (12)
C9—C4—C3121.13 (9)C15—C16—H16119.7
O1—C5—C4122.22 (9)C11—C16—H16119.7
O1—C5—C6114.71 (9)O3—C17—H17A109.5
C4—C5—C6123.04 (9)O3—C17—H17B109.5
C7—C6—C5117.91 (10)H17A—C17—H17B109.5
C7—C6—H6121.0O3—C17—H17C109.5
C5—C6—H6121.0H17A—C17—H17C109.5
O3—C7—C6123.90 (10)H17B—C17—H17C109.5
O3—C7—C8114.69 (9)O4—C18—H18A109.5
C6—C7—C8121.41 (9)O4—C18—H18B109.5
C9—C8—C7118.96 (9)H18A—C18—H18B109.5
C9—C8—H8120.5O4—C18—H18C109.5
C7—C8—H8120.5H18A—C18—H18C109.5
O4—C9—C8123.60 (9)H18B—C18—H18C109.5
C5—O1—C1—C2−44.61 (12)O3—C7—C8—C9−178.85 (9)
O1—C1—C2—C363.83 (11)C6—C7—C8—C91.05 (15)
O1—C1—C2—C10−170.72 (8)C18—O4—C9—C8−5.74 (14)
C1—C2—C3—O273.15 (10)C18—O4—C9—C4174.43 (8)
C10—C2—C3—O2−50.27 (11)C7—C8—C9—O4179.55 (9)
C1—C2—C3—C4−48.90 (11)C7—C8—C9—C4−0.63 (15)
C10—C2—C3—C4−172.32 (8)C5—C4—C9—O4179.95 (8)
O2—C3—C4—C5−100.13 (11)C3—C4—C9—O4−2.56 (13)
C2—C3—C4—C519.23 (12)C5—C4—C9—C80.11 (14)
O2—C3—C4—C982.51 (11)C3—C4—C9—C8177.60 (9)
C2—C3—C4—C9−158.13 (9)C1—C2—C10—C11175.01 (9)
C1—O1—C5—C412.11 (13)C3—C2—C10—C11−62.68 (12)
C1—O1—C5—C6−169.70 (9)C2—C10—C11—C12−88.26 (12)
C9—C4—C5—O1178.06 (9)C2—C10—C11—C1689.45 (12)
C3—C4—C5—O10.59 (14)C16—C11—C12—C13−0.11 (16)
C9—C4—C5—C60.02 (14)C10—C11—C12—C13177.66 (10)
C3—C4—C5—C6−177.45 (9)C11—C12—C13—C14−0.46 (17)
O1—C5—C6—C7−177.79 (9)C12—C13—C14—C150.56 (18)
C4—C5—C6—C70.38 (15)C13—C14—C15—C16−0.10 (18)
C17—O3—C7—C6−5.93 (14)C14—C15—C16—C11−0.48 (17)
C17—O3—C7—C8173.97 (9)C12—C11—C16—C150.57 (16)
C5—C6—C7—O3178.97 (9)C10—C11—C16—C15−177.19 (10)
C5—C6—C7—C8−0.92 (15)
D—H···AD—HH···AD···AD—H···A
O2—H2O···O1i0.95 (1)1.93 (1)2.8366 (15)158.(2)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O2—H2O⋯O1i0.95 (1)1.93 (1)2.8366 (15)158 (2)

Symmetry code: (i) .

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