Literature DB >> 21522409

2-[1-(3-{2-[(2-Hy-droxy-benzyl-idene)amino]-phen-oxy}prop-yl)-1H-1,3-benzodiazol-2-yl]phenol.

Hassan Keypour, Sareh Tamizi, Saeed Dehghanpour, Reza Azadbakht, Mehdi Khalaj.   

Abstract

In the title compound, C(29)H(25)N(3)O(3), the imine double bond has an E configuration. The dihedral angle between the hy-droxy-phenyl and benzene rings in the imine moiety is 26.95 (9)°, and the dihedral angle between the hy-droxy-phenyl and benzimidazole rings in the other moiety is 14.83 (9)°. These angles are probably limited to small values as a consequence of two strong intra-molecular O-H⋯N hydrogen bonds formed between the hy-droxy groups and the imine and imidazole N atoms. The aliphatic chain linking the two ring systems has a gauche conformation, as reflected in C-C-C-O torsion angle of 70.9 (2)°.

Entities:  

Year:  2011        PMID: 21522409      PMCID: PMC3052110          DOI: 10.1107/S1600536811005319

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related structures, see: Keypour et al. (2009 ▶). For background information on diimine complexes, see: Mahmoudi et al. (2009 ▶).

Experimental

Crystal data

C29H25N3O3 M = 463.52 Monoclinic, a = 9.1097 (6) Å b = 18.1946 (11) Å c = 13.7769 (5) Å β = 93.405 (4)° V = 2279.5 (2) Å3 Z = 4 Mo Kα radiation μ = 0.09 mm−1 T = 150 K 0.25 × 0.12 × 0.10 mm

Data collection

Nonius KappaCCD diffractometer Absorption correction: multi-scan (SORTAV; Blessing, 1995 ▶) T min = 0.866, T max = 0.993 16359 measured reflections 5135 independent reflections 3083 reflections with I > 2σ(I) R int = 0.054

Refinement

R[F 2 > 2σ(F 2)] = 0.055 wR(F 2) = 0.137 S = 1.06 5135 reflections 318 parameters 1 restraint H-atom parameters constrained Δρmax = 0.23 e Å−3 Δρmin = −0.20 e Å−3 Data collection: COLLECT (Nonius, 2002 ▶); cell refinement: DENZO-SMN (Otwinowski & Minor, 1997 ▶); data reduction: DENZO-SMN; program(s) used to solve structure: SIR92 (Altomare et al., 1994 ▶); program(s) used to refine structure: SHELXTL (Sheldrick, 2008 ▶); molecular graphics: PLATON (Spek, 2009 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536811005319/bh2338sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536811005319/bh2338Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C29H25N3O3F(000) = 976
Mr = 463.52Dx = 1.351 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 16359 reflections
a = 9.1097 (6) Åθ = 2.7–27.5°
b = 18.1946 (11) ŵ = 0.09 mm1
c = 13.7769 (5) ÅT = 150 K
β = 93.405 (4)°Needle, yellow
V = 2279.5 (2) Å30.25 × 0.12 × 0.10 mm
Z = 4
Nonius KappaCCD diffractometer5135 independent reflections
Radiation source: fine-focus sealed tube3083 reflections with I > 2σ(I)
graphiteRint = 0.054
Detector resolution: 9 pixels mm-1θmax = 27.5°, θmin = 2.7°
φ scans and ω scans with κ offsetsh = −11→11
Absorption correction: multi-scan (SORTAV; Blessing, 1995)k = −22→23
Tmin = 0.866, Tmax = 0.993l = −17→17
16359 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.055Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.137H-atom parameters constrained
S = 1.06w = 1/[σ2(Fo2) + (0.0536P)2 + 0.4485P] where P = (Fo2 + 2Fc2)/3
5135 reflections(Δ/σ)max = 0.001
318 parametersΔρmax = 0.23 e Å3
1 restraintΔρmin = −0.20 e Å3
0 constraints
xyzUiso*/Ueq
O10.98262 (18)0.22668 (8)0.88875 (9)0.0465 (4)
H1O0.92120.19220.88640.070*
O20.80830 (16)0.02045 (7)0.35975 (9)0.0369 (4)
O30.69646 (17)−0.13681 (8)0.49252 (9)0.0418 (4)
H2O0.7212−0.11560.44180.063*
N10.82575 (18)0.08636 (9)0.66217 (11)0.0352 (4)
N20.80517 (19)0.13040 (9)0.81279 (11)0.0378 (4)
N30.70199 (18)−0.10938 (9)0.31140 (11)0.0323 (4)
C10.8674 (2)0.13987 (11)0.72906 (13)0.0348 (5)
C20.7258 (2)0.04118 (11)0.70695 (14)0.0355 (5)
C30.6454 (2)−0.01894 (12)0.67220 (16)0.0424 (5)
H3A0.6527−0.03690.60790.051*
C40.5538 (2)−0.05139 (12)0.73642 (17)0.0461 (6)
H4A0.4961−0.09260.71550.055*
C50.5439 (2)−0.02520 (12)0.83139 (17)0.0462 (6)
H5A0.4805−0.04920.87360.055*
C60.6241 (2)0.03446 (12)0.86451 (16)0.0428 (5)
H6A0.61730.05200.92900.051*
C70.7156 (2)0.06849 (11)0.80071 (14)0.0371 (5)
C80.9683 (2)0.20146 (11)0.71522 (14)0.0342 (5)
C91.0249 (2)0.24102 (12)0.79778 (14)0.0358 (5)
C101.1272 (2)0.29677 (12)0.78825 (15)0.0406 (5)
H10A1.16820.32110.84450.049*
C111.1694 (2)0.31703 (12)0.69784 (16)0.0433 (5)
H11A1.24020.35490.69200.052*
C121.1092 (2)0.28247 (12)0.61553 (15)0.0411 (5)
H12A1.13530.29790.55300.049*
C131.0116 (2)0.22574 (11)0.62434 (14)0.0375 (5)
H13A0.97200.20210.56710.045*
C140.8752 (2)0.07122 (11)0.56509 (13)0.0354 (5)
H14A0.87710.01740.55450.042*
H14B0.97650.09000.56070.042*
C150.7747 (2)0.10687 (12)0.48571 (13)0.0372 (5)
H15A0.67490.08560.48770.045*
H15B0.76750.16020.49910.045*
C160.8287 (2)0.09626 (11)0.38527 (14)0.0375 (5)
H16A0.77250.12800.33800.045*
H16B0.93410.10950.38470.045*
C170.8190 (2)0.00152 (11)0.26392 (13)0.0319 (5)
C180.8766 (2)0.04669 (12)0.19473 (14)0.0382 (5)
H18A0.91540.09360.21270.046*
C190.8774 (2)0.02298 (12)0.09868 (15)0.0420 (5)
H19A0.91560.05420.05100.050*
C200.8233 (2)−0.04524 (12)0.07220 (14)0.0408 (5)
H20A0.8249−0.06110.00660.049*
C210.7667 (2)−0.09051 (12)0.14125 (14)0.0367 (5)
H21A0.7311−0.13790.12300.044*
C220.7614 (2)−0.06751 (11)0.23715 (13)0.0320 (5)
C230.5987 (2)−0.15625 (11)0.29380 (14)0.0344 (5)
H23A0.5604−0.16340.22880.041*
C240.5396 (2)−0.19841 (11)0.37172 (14)0.0339 (5)
C250.4292 (2)−0.25061 (12)0.35230 (16)0.0403 (5)
H25A0.3930−0.25840.28700.048*
C260.3717 (2)−0.29106 (12)0.42569 (17)0.0458 (6)
H26A0.2965−0.32630.41140.055*
C270.4258 (2)−0.27940 (12)0.52143 (16)0.0444 (6)
H27A0.3875−0.30730.57250.053*
C280.5338 (2)−0.22813 (12)0.54275 (15)0.0407 (5)
H28A0.5687−0.22060.60830.049*
C290.5923 (2)−0.18717 (11)0.46906 (14)0.0340 (5)
U11U22U33U12U13U23
O10.0556 (11)0.0529 (11)0.0310 (8)−0.0016 (8)0.0015 (7)−0.0072 (7)
O20.0491 (9)0.0346 (8)0.0271 (7)−0.0053 (7)0.0029 (6)−0.0018 (6)
O30.0502 (10)0.0431 (9)0.0320 (8)−0.0091 (7)0.0014 (6)0.0014 (6)
N10.0373 (10)0.0394 (10)0.0289 (9)0.0047 (8)0.0017 (7)−0.0045 (7)
N20.0435 (11)0.0402 (11)0.0298 (9)0.0039 (9)0.0032 (7)−0.0015 (7)
N30.0351 (10)0.0305 (10)0.0314 (9)0.0023 (8)0.0033 (7)0.0000 (7)
C10.0339 (12)0.0397 (13)0.0307 (11)0.0079 (9)−0.0001 (8)−0.0026 (9)
C20.0312 (12)0.0353 (12)0.0401 (12)0.0057 (9)0.0023 (9)0.0017 (9)
C30.0427 (13)0.0416 (14)0.0423 (13)0.0072 (11)−0.0021 (10)−0.0059 (10)
C40.0393 (14)0.0382 (13)0.0604 (15)0.0013 (11)−0.0010 (11)−0.0007 (11)
C50.0420 (14)0.0399 (14)0.0577 (15)0.0057 (11)0.0120 (11)0.0111 (11)
C60.0461 (14)0.0430 (14)0.0398 (12)0.0082 (11)0.0076 (10)0.0045 (10)
C70.0366 (12)0.0392 (13)0.0354 (12)0.0060 (10)0.0017 (9)−0.0001 (9)
C80.0298 (11)0.0366 (12)0.0358 (11)0.0035 (9)−0.0005 (8)−0.0022 (9)
C90.0358 (12)0.0432 (13)0.0283 (11)0.0114 (10)0.0000 (8)−0.0022 (9)
C100.0368 (13)0.0430 (13)0.0410 (13)0.0051 (11)−0.0046 (9)−0.0104 (10)
C110.0356 (13)0.0408 (13)0.0533 (14)0.0008 (10)0.0021 (10)−0.0037 (10)
C120.0413 (13)0.0444 (14)0.0380 (12)0.0029 (11)0.0062 (9)−0.0009 (10)
C130.0387 (13)0.0415 (13)0.0321 (11)0.0024 (10)0.0001 (9)−0.0048 (9)
C140.0390 (12)0.0399 (12)0.0275 (11)0.0067 (10)0.0041 (8)−0.0067 (9)
C150.0392 (12)0.0392 (13)0.0327 (11)0.0039 (10)−0.0007 (9)−0.0045 (9)
C160.0437 (13)0.0349 (12)0.0335 (11)−0.0050 (10)−0.0003 (9)−0.0007 (9)
C170.0323 (11)0.0390 (12)0.0244 (10)0.0016 (9)0.0011 (8)−0.0013 (8)
C180.0417 (13)0.0408 (13)0.0325 (12)−0.0043 (10)0.0051 (9)0.0012 (9)
C190.0448 (14)0.0487 (14)0.0334 (12)−0.0011 (11)0.0102 (9)0.0040 (10)
C200.0458 (14)0.0488 (14)0.0286 (11)0.0046 (11)0.0080 (9)−0.0028 (9)
C210.0398 (13)0.0366 (13)0.0336 (11)0.0047 (10)0.0024 (9)−0.0041 (9)
C220.0308 (11)0.0342 (12)0.0310 (11)0.0050 (9)0.0027 (8)0.0025 (8)
C230.0376 (12)0.0333 (12)0.0322 (11)0.0058 (10)0.0019 (9)−0.0013 (9)
C240.0346 (12)0.0297 (11)0.0377 (12)0.0050 (9)0.0040 (9)−0.0009 (9)
C250.0384 (13)0.0353 (12)0.0471 (13)0.0004 (10)0.0025 (10)−0.0056 (10)
C260.0382 (14)0.0345 (13)0.0649 (16)−0.0034 (10)0.0058 (11)0.0011 (11)
C270.0413 (14)0.0381 (13)0.0549 (14)0.0044 (11)0.0116 (10)0.0133 (10)
C280.0406 (13)0.0407 (13)0.0414 (12)0.0051 (11)0.0061 (9)0.0085 (10)
C290.0330 (12)0.0295 (12)0.0397 (12)0.0026 (9)0.0043 (9)0.0005 (9)
O1—C91.358 (2)C12—H12A0.9500
O1—H1O0.8400C13—H13A0.9500
O2—C171.373 (2)C14—C151.528 (3)
O2—C161.433 (2)C14—H14A0.9900
O3—C291.344 (2)C14—H14B0.9900
O3—H2O0.8400C15—C161.508 (3)
N1—C11.378 (2)C15—H15A0.9900
N1—C21.397 (3)C15—H15B0.9900
N1—C141.462 (2)C16—H16A0.9900
N2—C11.326 (2)C16—H16B0.9900
N2—C71.395 (3)C17—C181.385 (3)
N3—C231.282 (2)C17—C221.402 (3)
N3—C221.409 (2)C18—C191.392 (3)
C1—C81.469 (3)C18—H18A0.9500
C2—C31.386 (3)C19—C201.377 (3)
C2—C71.392 (3)C19—H19A0.9500
C3—C41.384 (3)C20—C211.381 (3)
C3—H3A0.9500C20—H20A0.9500
C4—C51.400 (3)C21—C221.390 (3)
C4—H4A0.9500C21—H21A0.9500
C5—C61.371 (3)C23—C241.449 (3)
C5—H5A0.9500C23—H23A0.9500
C6—C71.392 (3)C24—C251.397 (3)
C6—H6A0.9500C24—C291.412 (3)
C8—C131.406 (3)C25—C261.379 (3)
C8—C91.417 (3)C25—H25A0.9500
C9—C101.388 (3)C26—C271.397 (3)
C10—C111.376 (3)C26—H26A0.9500
C10—H10A0.9500C27—C281.374 (3)
C11—C121.381 (3)C27—H27A0.9500
C11—H11A0.9500C28—C291.391 (3)
C12—C131.372 (3)C28—H28A0.9500
C9—O1—H1O109.5H14A—C14—H14B107.9
C17—O2—C16117.50 (14)C16—C15—C14112.85 (17)
C29—O3—H2O109.5C16—C15—H15A109.0
C1—N1—C2106.32 (16)C14—C15—H15A109.0
C1—N1—C14131.09 (17)C16—C15—H15B109.0
C2—N1—C14122.48 (16)C14—C15—H15B109.0
C1—N2—C7106.17 (16)H15A—C15—H15B107.8
C23—N3—C22122.11 (16)O2—C16—C15107.68 (16)
N2—C1—N1112.02 (18)O2—C16—H16A110.2
N2—C1—C8121.00 (17)C15—C16—H16A110.2
N1—C1—C8126.98 (18)O2—C16—H16B110.2
C3—C2—C7122.6 (2)C15—C16—H16B110.2
C3—C2—N1131.05 (19)H16A—C16—H16B108.5
C7—C2—N1106.32 (18)O2—C17—C18124.33 (18)
C4—C3—C2116.2 (2)O2—C17—C22115.51 (17)
C4—C3—H3A121.9C18—C17—C22120.12 (17)
C2—C3—H3A121.9C17—C18—C19119.6 (2)
C3—C4—C5121.8 (2)C17—C18—H18A120.2
C3—C4—H4A119.1C19—C18—H18A120.2
C5—C4—H4A119.1C20—C19—C18120.6 (2)
C6—C5—C4121.2 (2)C20—C19—H19A119.7
C6—C5—H5A119.4C18—C19—H19A119.7
C4—C5—H5A119.4C19—C20—C21119.83 (19)
C5—C6—C7118.0 (2)C19—C20—H20A120.1
C5—C6—H6A121.0C21—C20—H20A120.1
C7—C6—H6A121.0C20—C21—C22120.7 (2)
C6—C7—C2120.2 (2)C20—C21—H21A119.6
C6—C7—N2130.68 (19)C22—C21—H21A119.6
C2—C7—N2109.13 (17)C21—C22—C17119.08 (18)
C13—C8—C9116.56 (19)C21—C22—N3124.35 (18)
C13—C8—C1124.48 (18)C17—C22—N3116.57 (16)
C9—C8—C1118.95 (18)N3—C23—C24120.85 (18)
O1—C9—C10117.15 (18)N3—C23—H23A119.6
O1—C9—C8122.22 (19)C24—C23—H23A119.6
C10—C9—C8120.63 (18)C25—C24—C29118.71 (18)
C11—C10—C9120.45 (19)C25—C24—C23120.85 (18)
C11—C10—H10A119.8C29—C24—C23120.43 (18)
C9—C10—H10A119.8C26—C25—C24121.5 (2)
C10—C11—C12120.2 (2)C26—C25—H25A119.2
C10—C11—H11A119.9C24—C25—H25A119.2
C12—C11—H11A119.9C25—C26—C27118.9 (2)
C13—C12—C11119.8 (2)C25—C26—H26A120.6
C13—C12—H12A120.1C27—C26—H26A120.6
C11—C12—H12A120.1C28—C27—C26120.9 (2)
C12—C13—C8122.18 (18)C28—C27—H27A119.6
C12—C13—H13A118.9C26—C27—H27A119.6
C8—C13—H13A118.9C27—C28—C29120.5 (2)
N1—C14—C15111.78 (16)C27—C28—H28A119.7
N1—C14—H14A109.3C29—C28—H28A119.7
C15—C14—H14A109.3O3—C29—C28119.03 (18)
N1—C14—H14B109.3O3—C29—C24121.48 (18)
C15—C14—H14B109.3C28—C29—C24119.48 (19)
D—H···AD—HH···AD···AD—H···A
O1—H1O···N20.841.812.564 (2)148
O3—H2O···N30.841.802.548 (2)148
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1—H1O⋯N20.841.812.564 (2)148
O3—H2O⋯N30.841.802.548 (2)148
  4 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  An empirical correction for absorption anisotropy.

Authors:  R H Blessing
Journal:  Acta Crystallogr A       Date:  1995-01-01       Impact factor: 2.290

3.  Di-μ-chlorido-bis-({2-[(4-bromo-phen-yl)-imino-meth-yl]pyridine-κN,N'}-chloridomercury(II)).

Authors:  Ali Mahmoudi; Saeed Dehghanpour; Mehdi Khalaj; Shabnam Pakravan
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-07-11

4.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  4 in total

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