| Literature DB >> 21522409 |
Hassan Keypour, Sareh Tamizi, Saeed Dehghanpour, Reza Azadbakht, Mehdi Khalaj.
Abstract
In the title compound, C(29)H(25)N(3)O(3), the imine double bond has an E configuration. The dihedral angle between the hy-droxy-phenyl and benzene rings in the imine moiety is 26.95 (9)°, and the dihedral angle between the hy-droxy-phenyl and benzimidazole rings in the other moiety is 14.83 (9)°. These angles are probably limited to small values as a consequence of two strong intra-molecular O-H⋯N hydrogen bonds formed between the hy-droxy groups and the imine and imidazole N atoms. The aliphatic chain linking the two ring systems has a gauche conformation, as reflected in C-C-C-O torsion angle of 70.9 (2)°.Entities:
Year: 2011 PMID: 21522409 PMCID: PMC3052110 DOI: 10.1107/S1600536811005319
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C29H25N3O3 | |
| Monoclinic, | Mo |
| Hall symbol: -P 2ybc | Cell parameters from 16359 reflections |
| θ = 2.7–27.5° | |
| µ = 0.09 mm−1 | |
| β = 93.405 (4)° | Needle, yellow |
| 0.25 × 0.12 × 0.10 mm | |
| Nonius KappaCCD diffractometer | 5135 independent reflections |
| Radiation source: fine-focus sealed tube | 3083 reflections with |
| graphite | |
| Detector resolution: 9 pixels mm-1 | θmax = 27.5°, θmin = 2.7° |
| φ scans and ω scans with κ offsets | |
| Absorption correction: multi-scan ( | |
| 16359 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H-atom parameters constrained | |
| 5135 reflections | (Δ/σ)max = 0.001 |
| 318 parameters | Δρmax = 0.23 e Å−3 |
| 1 restraint | Δρmin = −0.20 e Å−3 |
| 0 constraints |
| O1 | 0.98262 (18) | 0.22668 (8) | 0.88875 (9) | 0.0465 (4) | |
| H1O | 0.9212 | 0.1922 | 0.8864 | 0.070* | |
| O2 | 0.80830 (16) | 0.02045 (7) | 0.35975 (9) | 0.0369 (4) | |
| O3 | 0.69646 (17) | −0.13681 (8) | 0.49252 (9) | 0.0418 (4) | |
| H2O | 0.7212 | −0.1156 | 0.4418 | 0.063* | |
| N1 | 0.82575 (18) | 0.08636 (9) | 0.66217 (11) | 0.0352 (4) | |
| N2 | 0.80517 (19) | 0.13040 (9) | 0.81279 (11) | 0.0378 (4) | |
| N3 | 0.70199 (18) | −0.10938 (9) | 0.31140 (11) | 0.0323 (4) | |
| C1 | 0.8674 (2) | 0.13987 (11) | 0.72906 (13) | 0.0348 (5) | |
| C2 | 0.7258 (2) | 0.04118 (11) | 0.70695 (14) | 0.0355 (5) | |
| C3 | 0.6454 (2) | −0.01894 (12) | 0.67220 (16) | 0.0424 (5) | |
| H3A | 0.6527 | −0.0369 | 0.6079 | 0.051* | |
| C4 | 0.5538 (2) | −0.05139 (12) | 0.73642 (17) | 0.0461 (6) | |
| H4A | 0.4961 | −0.0926 | 0.7155 | 0.055* | |
| C5 | 0.5439 (2) | −0.02520 (12) | 0.83139 (17) | 0.0462 (6) | |
| H5A | 0.4805 | −0.0492 | 0.8736 | 0.055* | |
| C6 | 0.6241 (2) | 0.03446 (12) | 0.86451 (16) | 0.0428 (5) | |
| H6A | 0.6173 | 0.0520 | 0.9290 | 0.051* | |
| C7 | 0.7156 (2) | 0.06849 (11) | 0.80071 (14) | 0.0371 (5) | |
| C8 | 0.9683 (2) | 0.20146 (11) | 0.71522 (14) | 0.0342 (5) | |
| C9 | 1.0249 (2) | 0.24102 (12) | 0.79778 (14) | 0.0358 (5) | |
| C10 | 1.1272 (2) | 0.29677 (12) | 0.78825 (15) | 0.0406 (5) | |
| H10A | 1.1682 | 0.3211 | 0.8445 | 0.049* | |
| C11 | 1.1694 (2) | 0.31703 (12) | 0.69784 (16) | 0.0433 (5) | |
| H11A | 1.2402 | 0.3549 | 0.6920 | 0.052* | |
| C12 | 1.1092 (2) | 0.28247 (12) | 0.61553 (15) | 0.0411 (5) | |
| H12A | 1.1353 | 0.2979 | 0.5530 | 0.049* | |
| C13 | 1.0116 (2) | 0.22574 (11) | 0.62434 (14) | 0.0375 (5) | |
| H13A | 0.9720 | 0.2021 | 0.5671 | 0.045* | |
| C14 | 0.8752 (2) | 0.07122 (11) | 0.56509 (13) | 0.0354 (5) | |
| H14A | 0.8771 | 0.0174 | 0.5545 | 0.042* | |
| H14B | 0.9765 | 0.0900 | 0.5607 | 0.042* | |
| C15 | 0.7747 (2) | 0.10687 (12) | 0.48571 (13) | 0.0372 (5) | |
| H15A | 0.6749 | 0.0856 | 0.4877 | 0.045* | |
| H15B | 0.7675 | 0.1602 | 0.4991 | 0.045* | |
| C16 | 0.8287 (2) | 0.09626 (11) | 0.38527 (14) | 0.0375 (5) | |
| H16A | 0.7725 | 0.1280 | 0.3380 | 0.045* | |
| H16B | 0.9341 | 0.1095 | 0.3847 | 0.045* | |
| C17 | 0.8190 (2) | 0.00152 (11) | 0.26392 (13) | 0.0319 (5) | |
| C18 | 0.8766 (2) | 0.04669 (12) | 0.19473 (14) | 0.0382 (5) | |
| H18A | 0.9154 | 0.0936 | 0.2127 | 0.046* | |
| C19 | 0.8774 (2) | 0.02298 (12) | 0.09868 (15) | 0.0420 (5) | |
| H19A | 0.9156 | 0.0542 | 0.0510 | 0.050* | |
| C20 | 0.8233 (2) | −0.04524 (12) | 0.07220 (14) | 0.0408 (5) | |
| H20A | 0.8249 | −0.0611 | 0.0066 | 0.049* | |
| C21 | 0.7667 (2) | −0.09051 (12) | 0.14125 (14) | 0.0367 (5) | |
| H21A | 0.7311 | −0.1379 | 0.1230 | 0.044* | |
| C22 | 0.7614 (2) | −0.06751 (11) | 0.23715 (13) | 0.0320 (5) | |
| C23 | 0.5987 (2) | −0.15625 (11) | 0.29380 (14) | 0.0344 (5) | |
| H23A | 0.5604 | −0.1634 | 0.2288 | 0.041* | |
| C24 | 0.5396 (2) | −0.19841 (11) | 0.37172 (14) | 0.0339 (5) | |
| C25 | 0.4292 (2) | −0.25061 (12) | 0.35230 (16) | 0.0403 (5) | |
| H25A | 0.3930 | −0.2584 | 0.2870 | 0.048* | |
| C26 | 0.3717 (2) | −0.29106 (12) | 0.42569 (17) | 0.0458 (6) | |
| H26A | 0.2965 | −0.3263 | 0.4114 | 0.055* | |
| C27 | 0.4258 (2) | −0.27940 (12) | 0.52143 (16) | 0.0444 (6) | |
| H27A | 0.3875 | −0.3073 | 0.5725 | 0.053* | |
| C28 | 0.5338 (2) | −0.22813 (12) | 0.54275 (15) | 0.0407 (5) | |
| H28A | 0.5687 | −0.2206 | 0.6083 | 0.049* | |
| C29 | 0.5923 (2) | −0.18717 (11) | 0.46906 (14) | 0.0340 (5) |
| O1 | 0.0556 (11) | 0.0529 (11) | 0.0310 (8) | −0.0016 (8) | 0.0015 (7) | −0.0072 (7) |
| O2 | 0.0491 (9) | 0.0346 (8) | 0.0271 (7) | −0.0053 (7) | 0.0029 (6) | −0.0018 (6) |
| O3 | 0.0502 (10) | 0.0431 (9) | 0.0320 (8) | −0.0091 (7) | 0.0014 (6) | 0.0014 (6) |
| N1 | 0.0373 (10) | 0.0394 (10) | 0.0289 (9) | 0.0047 (8) | 0.0017 (7) | −0.0045 (7) |
| N2 | 0.0435 (11) | 0.0402 (11) | 0.0298 (9) | 0.0039 (9) | 0.0032 (7) | −0.0015 (7) |
| N3 | 0.0351 (10) | 0.0305 (10) | 0.0314 (9) | 0.0023 (8) | 0.0033 (7) | 0.0000 (7) |
| C1 | 0.0339 (12) | 0.0397 (13) | 0.0307 (11) | 0.0079 (9) | −0.0001 (8) | −0.0026 (9) |
| C2 | 0.0312 (12) | 0.0353 (12) | 0.0401 (12) | 0.0057 (9) | 0.0023 (9) | 0.0017 (9) |
| C3 | 0.0427 (13) | 0.0416 (14) | 0.0423 (13) | 0.0072 (11) | −0.0021 (10) | −0.0059 (10) |
| C4 | 0.0393 (14) | 0.0382 (13) | 0.0604 (15) | 0.0013 (11) | −0.0010 (11) | −0.0007 (11) |
| C5 | 0.0420 (14) | 0.0399 (14) | 0.0577 (15) | 0.0057 (11) | 0.0120 (11) | 0.0111 (11) |
| C6 | 0.0461 (14) | 0.0430 (14) | 0.0398 (12) | 0.0082 (11) | 0.0076 (10) | 0.0045 (10) |
| C7 | 0.0366 (12) | 0.0392 (13) | 0.0354 (12) | 0.0060 (10) | 0.0017 (9) | −0.0001 (9) |
| C8 | 0.0298 (11) | 0.0366 (12) | 0.0358 (11) | 0.0035 (9) | −0.0005 (8) | −0.0022 (9) |
| C9 | 0.0358 (12) | 0.0432 (13) | 0.0283 (11) | 0.0114 (10) | 0.0000 (8) | −0.0022 (9) |
| C10 | 0.0368 (13) | 0.0430 (13) | 0.0410 (13) | 0.0051 (11) | −0.0046 (9) | −0.0104 (10) |
| C11 | 0.0356 (13) | 0.0408 (13) | 0.0533 (14) | 0.0008 (10) | 0.0021 (10) | −0.0037 (10) |
| C12 | 0.0413 (13) | 0.0444 (14) | 0.0380 (12) | 0.0029 (11) | 0.0062 (9) | −0.0009 (10) |
| C13 | 0.0387 (13) | 0.0415 (13) | 0.0321 (11) | 0.0024 (10) | 0.0001 (9) | −0.0048 (9) |
| C14 | 0.0390 (12) | 0.0399 (12) | 0.0275 (11) | 0.0067 (10) | 0.0041 (8) | −0.0067 (9) |
| C15 | 0.0392 (12) | 0.0392 (13) | 0.0327 (11) | 0.0039 (10) | −0.0007 (9) | −0.0045 (9) |
| C16 | 0.0437 (13) | 0.0349 (12) | 0.0335 (11) | −0.0050 (10) | −0.0003 (9) | −0.0007 (9) |
| C17 | 0.0323 (11) | 0.0390 (12) | 0.0244 (10) | 0.0016 (9) | 0.0011 (8) | −0.0013 (8) |
| C18 | 0.0417 (13) | 0.0408 (13) | 0.0325 (12) | −0.0043 (10) | 0.0051 (9) | 0.0012 (9) |
| C19 | 0.0448 (14) | 0.0487 (14) | 0.0334 (12) | −0.0011 (11) | 0.0102 (9) | 0.0040 (10) |
| C20 | 0.0458 (14) | 0.0488 (14) | 0.0286 (11) | 0.0046 (11) | 0.0080 (9) | −0.0028 (9) |
| C21 | 0.0398 (13) | 0.0366 (13) | 0.0336 (11) | 0.0047 (10) | 0.0024 (9) | −0.0041 (9) |
| C22 | 0.0308 (11) | 0.0342 (12) | 0.0310 (11) | 0.0050 (9) | 0.0027 (8) | 0.0025 (8) |
| C23 | 0.0376 (12) | 0.0333 (12) | 0.0322 (11) | 0.0058 (10) | 0.0019 (9) | −0.0013 (9) |
| C24 | 0.0346 (12) | 0.0297 (11) | 0.0377 (12) | 0.0050 (9) | 0.0040 (9) | −0.0009 (9) |
| C25 | 0.0384 (13) | 0.0353 (12) | 0.0471 (13) | 0.0004 (10) | 0.0025 (10) | −0.0056 (10) |
| C26 | 0.0382 (14) | 0.0345 (13) | 0.0649 (16) | −0.0034 (10) | 0.0058 (11) | 0.0011 (11) |
| C27 | 0.0413 (14) | 0.0381 (13) | 0.0549 (14) | 0.0044 (11) | 0.0116 (10) | 0.0133 (10) |
| C28 | 0.0406 (13) | 0.0407 (13) | 0.0414 (12) | 0.0051 (11) | 0.0061 (9) | 0.0085 (10) |
| C29 | 0.0330 (12) | 0.0295 (12) | 0.0397 (12) | 0.0026 (9) | 0.0043 (9) | 0.0005 (9) |
| O1—C9 | 1.358 (2) | C12—H12A | 0.9500 |
| O1—H1O | 0.8400 | C13—H13A | 0.9500 |
| O2—C17 | 1.373 (2) | C14—C15 | 1.528 (3) |
| O2—C16 | 1.433 (2) | C14—H14A | 0.9900 |
| O3—C29 | 1.344 (2) | C14—H14B | 0.9900 |
| O3—H2O | 0.8400 | C15—C16 | 1.508 (3) |
| N1—C1 | 1.378 (2) | C15—H15A | 0.9900 |
| N1—C2 | 1.397 (3) | C15—H15B | 0.9900 |
| N1—C14 | 1.462 (2) | C16—H16A | 0.9900 |
| N2—C1 | 1.326 (2) | C16—H16B | 0.9900 |
| N2—C7 | 1.395 (3) | C17—C18 | 1.385 (3) |
| N3—C23 | 1.282 (2) | C17—C22 | 1.402 (3) |
| N3—C22 | 1.409 (2) | C18—C19 | 1.392 (3) |
| C1—C8 | 1.469 (3) | C18—H18A | 0.9500 |
| C2—C3 | 1.386 (3) | C19—C20 | 1.377 (3) |
| C2—C7 | 1.392 (3) | C19—H19A | 0.9500 |
| C3—C4 | 1.384 (3) | C20—C21 | 1.381 (3) |
| C3—H3A | 0.9500 | C20—H20A | 0.9500 |
| C4—C5 | 1.400 (3) | C21—C22 | 1.390 (3) |
| C4—H4A | 0.9500 | C21—H21A | 0.9500 |
| C5—C6 | 1.371 (3) | C23—C24 | 1.449 (3) |
| C5—H5A | 0.9500 | C23—H23A | 0.9500 |
| C6—C7 | 1.392 (3) | C24—C25 | 1.397 (3) |
| C6—H6A | 0.9500 | C24—C29 | 1.412 (3) |
| C8—C13 | 1.406 (3) | C25—C26 | 1.379 (3) |
| C8—C9 | 1.417 (3) | C25—H25A | 0.9500 |
| C9—C10 | 1.388 (3) | C26—C27 | 1.397 (3) |
| C10—C11 | 1.376 (3) | C26—H26A | 0.9500 |
| C10—H10A | 0.9500 | C27—C28 | 1.374 (3) |
| C11—C12 | 1.381 (3) | C27—H27A | 0.9500 |
| C11—H11A | 0.9500 | C28—C29 | 1.391 (3) |
| C12—C13 | 1.372 (3) | C28—H28A | 0.9500 |
| C9—O1—H1O | 109.5 | H14A—C14—H14B | 107.9 |
| C17—O2—C16 | 117.50 (14) | C16—C15—C14 | 112.85 (17) |
| C29—O3—H2O | 109.5 | C16—C15—H15A | 109.0 |
| C1—N1—C2 | 106.32 (16) | C14—C15—H15A | 109.0 |
| C1—N1—C14 | 131.09 (17) | C16—C15—H15B | 109.0 |
| C2—N1—C14 | 122.48 (16) | C14—C15—H15B | 109.0 |
| C1—N2—C7 | 106.17 (16) | H15A—C15—H15B | 107.8 |
| C23—N3—C22 | 122.11 (16) | O2—C16—C15 | 107.68 (16) |
| N2—C1—N1 | 112.02 (18) | O2—C16—H16A | 110.2 |
| N2—C1—C8 | 121.00 (17) | C15—C16—H16A | 110.2 |
| N1—C1—C8 | 126.98 (18) | O2—C16—H16B | 110.2 |
| C3—C2—C7 | 122.6 (2) | C15—C16—H16B | 110.2 |
| C3—C2—N1 | 131.05 (19) | H16A—C16—H16B | 108.5 |
| C7—C2—N1 | 106.32 (18) | O2—C17—C18 | 124.33 (18) |
| C4—C3—C2 | 116.2 (2) | O2—C17—C22 | 115.51 (17) |
| C4—C3—H3A | 121.9 | C18—C17—C22 | 120.12 (17) |
| C2—C3—H3A | 121.9 | C17—C18—C19 | 119.6 (2) |
| C3—C4—C5 | 121.8 (2) | C17—C18—H18A | 120.2 |
| C3—C4—H4A | 119.1 | C19—C18—H18A | 120.2 |
| C5—C4—H4A | 119.1 | C20—C19—C18 | 120.6 (2) |
| C6—C5—C4 | 121.2 (2) | C20—C19—H19A | 119.7 |
| C6—C5—H5A | 119.4 | C18—C19—H19A | 119.7 |
| C4—C5—H5A | 119.4 | C19—C20—C21 | 119.83 (19) |
| C5—C6—C7 | 118.0 (2) | C19—C20—H20A | 120.1 |
| C5—C6—H6A | 121.0 | C21—C20—H20A | 120.1 |
| C7—C6—H6A | 121.0 | C20—C21—C22 | 120.7 (2) |
| C6—C7—C2 | 120.2 (2) | C20—C21—H21A | 119.6 |
| C6—C7—N2 | 130.68 (19) | C22—C21—H21A | 119.6 |
| C2—C7—N2 | 109.13 (17) | C21—C22—C17 | 119.08 (18) |
| C13—C8—C9 | 116.56 (19) | C21—C22—N3 | 124.35 (18) |
| C13—C8—C1 | 124.48 (18) | C17—C22—N3 | 116.57 (16) |
| C9—C8—C1 | 118.95 (18) | N3—C23—C24 | 120.85 (18) |
| O1—C9—C10 | 117.15 (18) | N3—C23—H23A | 119.6 |
| O1—C9—C8 | 122.22 (19) | C24—C23—H23A | 119.6 |
| C10—C9—C8 | 120.63 (18) | C25—C24—C29 | 118.71 (18) |
| C11—C10—C9 | 120.45 (19) | C25—C24—C23 | 120.85 (18) |
| C11—C10—H10A | 119.8 | C29—C24—C23 | 120.43 (18) |
| C9—C10—H10A | 119.8 | C26—C25—C24 | 121.5 (2) |
| C10—C11—C12 | 120.2 (2) | C26—C25—H25A | 119.2 |
| C10—C11—H11A | 119.9 | C24—C25—H25A | 119.2 |
| C12—C11—H11A | 119.9 | C25—C26—C27 | 118.9 (2) |
| C13—C12—C11 | 119.8 (2) | C25—C26—H26A | 120.6 |
| C13—C12—H12A | 120.1 | C27—C26—H26A | 120.6 |
| C11—C12—H12A | 120.1 | C28—C27—C26 | 120.9 (2) |
| C12—C13—C8 | 122.18 (18) | C28—C27—H27A | 119.6 |
| C12—C13—H13A | 118.9 | C26—C27—H27A | 119.6 |
| C8—C13—H13A | 118.9 | C27—C28—C29 | 120.5 (2) |
| N1—C14—C15 | 111.78 (16) | C27—C28—H28A | 119.7 |
| N1—C14—H14A | 109.3 | C29—C28—H28A | 119.7 |
| C15—C14—H14A | 109.3 | O3—C29—C28 | 119.03 (18) |
| N1—C14—H14B | 109.3 | O3—C29—C24 | 121.48 (18) |
| C15—C14—H14B | 109.3 | C28—C29—C24 | 119.48 (19) |
| H··· | ||||
| O1—H1O···N2 | 0.84 | 1.81 | 2.564 (2) | 148 |
| O3—H2O···N3 | 0.84 | 1.80 | 2.548 (2) | 148 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| O1—H1 | 0.84 | 1.81 | 2.564 (2) | 148 |
| O3—H2 | 0.84 | 1.80 | 2.548 (2) | 148 |