Literature DB >> 21522408

(5S)-3-Chloro-5-[(1R,2S,5R)-2-isopropyl-5-methyl-cyclo-hex-yloxy]-4-(4-methyl-piperidin-1-yl)furan-2(5H)-one.

Xiao-Mei Wang1, Jian-Hua Fu, Song-Liang Cai, Zhao-Yang Wang.   

Abstract

The title compound, C(20)H(32)ClNO(3), was obtained via a tandem asymmetric Michael addition-elimination reaction of (5S)-3,4-dichloro-5-(l-menth-yloxy)furan-2(5H)-one and 4-methyl-piperidine in the presence of potassium fluoride. The furan-one ring is approximately planar [maximum atomic deviation = 0.022 (2) Å] while the cyclo-hexane ring adopts a chair conformation. Weak inter-molecular C-H⋯O hydrogen bonding is present in the crystal structure.

Entities:  

Year:  2011        PMID: 21522408      PMCID: PMC3051989          DOI: 10.1107/S1600536811005216

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

The title compound is a derivative of 4-amino-2(5H)-furan­one. For the biological activity of 4-amino-2(5H)-furan­ones, see: Lattmann et al. (2005 ▶); Prasad & Gandi (2010 ▶); Steenackers et al. (2010 ▶). For asymmetric Michael addition reactions of 2(5H)-furan­one and for the synthesis of the title compound, see: Song et al. (2009 ▶).

Experimental

Crystal data

C20H32ClNO3 M = 369.92 Orthorhombic, a = 9.187 (5) Å b = 9.248 (5) Å c = 24.987 (12) Å V = 2122.9 (19) Å3 Z = 4 Mo Kα radiation μ = 0.20 mm−1 T = 298 K 0.32 × 0.30 × 0.28 mm

Data collection

Bruker APEXII area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.940, T max = 0.947 12264 measured reflections 4505 independent reflections 2620 reflections with I > 2σ(I) R int = 0.038

Refinement

R[F 2 > 2σ(F 2)] = 0.043 wR(F 2) = 0.112 S = 1.01 4505 reflections 231 parameters 24 restraints H-atom parameters constrained Δρmax = 0.13 e Å−3 Δρmin = −0.16 e Å−3 Absolute structure: Flack (1983 ▶), 1921 Friedel pairs Flack parameter: 0.10 (8) Data collection: APEX2 (Bruker, 2008 ▶); cell refinement: SAINT (Bruker, 2008 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536811005216/go2003sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536811005216/go2003Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C20H32ClNO3F(000) = 800
Mr = 369.92Dx = 1.157 Mg m3
Orthorhombic, P212121Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ac 2abCell parameters from 2408 reflections
a = 9.187 (5) Åθ = 2.7–19.8°
b = 9.248 (5) ŵ = 0.20 mm1
c = 24.987 (12) ÅT = 298 K
V = 2122.9 (19) Å3Block, colourless
Z = 40.32 × 0.30 × 0.28 mm
Bruker APEXII area-detector diffractometer4505 independent reflections
Radiation source: fine-focus sealed tube2620 reflections with I > 2σ(I)
graphiteRint = 0.038
φ and ω scansθmax = 26.8°, θmin = 2.4°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −10→11
Tmin = 0.940, Tmax = 0.947k = −11→10
12264 measured reflectionsl = −31→31
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.043H-atom parameters constrained
wR(F2) = 0.112w = 1/[σ2(Fo2) + (0.0492P)2 + 0.001P] where P = (Fo2 + 2Fc2)/3
S = 1.01(Δ/σ)max < 0.001
4505 reflectionsΔρmax = 0.13 e Å3
231 parametersΔρmin = −0.16 e Å3
24 restraintsAbsolute structure: Flack (1983), 1921 Friedel pairs
Primary atom site location: structure-invariant direct methodsFlack parameter: 0.10 (8)
Experimental. Data for (I): [α]20°D = 96.2° (c 0.600, CH3CH2OH); 1H NMR (400 MHz, CDCl3, TMS): 0.769 (3H, d, J = 6.8 Hz, CH3), 0.831-0.934 (7H, m, CH, 2CH3), 0.981-1.166 (5H, m, CH2, CH3), 1.212-1.756 (9H, m, 3CH, 3CH2), 2.160-2.271 (2H, m, CH2), 2.974-3.090 (2H, m, CH2), 3.529-3.581 (1H, m, CH), 4.079-4.335 (2H, m, CH2), 5.762 (1H, s, CH), ESI-MS, m/z (%): Calcd for C20H32ClNO3+([M+H]+): 370.21(100.0), 372.20(32.0), Found: 370.29 (45.0), 372.33(15.0).
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl10.60861 (9)−0.13528 (9)0.17373 (3)0.0923 (3)
C30.7320 (3)0.0841 (3)0.23600 (8)0.0557 (6)
C40.8425 (3)0.0853 (3)0.28119 (8)0.0578 (6)
H40.92520.14790.27250.069*
C20.7123 (3)−0.0578 (3)0.22267 (9)0.0621 (7)
C10.8084 (3)−0.1478 (4)0.25291 (10)0.0681 (7)
C50.8604 (3)0.1414 (3)0.37500 (8)0.0621 (6)
H50.96300.15220.36500.074*
C60.8125 (3)0.2733 (3)0.40633 (9)0.0702 (8)
H60.70850.26040.41360.084*
C70.8883 (4)0.2751 (4)0.46068 (10)0.0956 (9)
H7A0.99190.28970.45540.115*
H7B0.85170.35580.48150.115*
C100.8414 (4)0.0021 (4)0.40651 (11)0.0960 (11)
H10A0.8791−0.07800.38560.115*
H10B0.7385−0.01490.41240.115*
C110.8269 (4)0.4160 (4)0.37596 (11)0.0878 (10)
H110.77990.40160.34120.105*
C90.9194 (5)0.0065 (4)0.46042 (11)0.1115 (13)
H91.02380.01940.45380.134*
C80.8648 (6)0.1363 (5)0.49177 (11)0.1279 (14)
H8A0.76190.12450.49930.153*
H8B0.91600.14190.52570.153*
C130.7463 (5)0.5387 (4)0.40314 (16)0.1393 (16)
H13A0.75080.62360.38110.209*
H13B0.79060.55860.43710.209*
H13C0.64650.51170.40840.209*
C140.9795 (6)0.4590 (5)0.36473 (16)0.1399 (16)
H14A1.02620.48710.39750.210*
H14B0.98020.53880.34020.210*
H14C1.03080.37880.34930.210*
C180.7583 (3)0.4266 (3)0.17613 (10)0.0709 (7)
H18A0.83180.37550.15570.085*
H18B0.79460.52320.18330.085*
C190.7345 (3)0.3499 (3)0.22804 (9)0.0711 (7)
H19A0.82660.34010.24670.085*
H19B0.66960.40650.25040.085*
C160.5572 (3)0.2862 (3)0.13592 (10)0.0750 (8)
H16A0.46460.29300.11740.090*
H16B0.62260.22900.11400.090*
C150.5354 (3)0.2122 (3)0.18891 (9)0.0691 (7)
H15A0.46280.26430.20950.083*
H15B0.49960.11490.18300.083*
C170.6204 (3)0.4374 (3)0.14313 (10)0.0755 (8)
H170.54980.49570.16310.091*
C200.6467 (4)0.5099 (4)0.08935 (13)0.1153 (13)
H20A0.55530.52510.07160.173*
H20B0.70730.44900.06760.173*
H20C0.69410.60120.09480.173*
N10.6712 (2)0.2061 (3)0.21914 (8)0.0635 (6)
O30.77190 (15)0.13329 (19)0.32666 (5)0.0606 (4)
O10.88796 (18)−0.0624 (2)0.28665 (6)0.0692 (5)
O20.8292 (2)−0.2765 (3)0.25154 (9)0.0958 (7)
C120.8980 (9)−0.1363 (5)0.49012 (16)0.193 (2)
H12A0.7961−0.15140.49660.290*
H12B0.9489−0.13290.52370.290*
H12C0.9355−0.21420.46880.290*
U11U22U33U12U13U23
Cl10.0966 (5)0.0925 (6)0.0878 (5)−0.0040 (5)−0.0238 (4)−0.0303 (4)
C30.0532 (14)0.0716 (19)0.0423 (11)−0.0039 (13)0.0037 (10)−0.0047 (12)
C40.0566 (14)0.0663 (19)0.0507 (13)−0.0053 (12)−0.0014 (11)−0.0038 (12)
C20.0612 (16)0.072 (2)0.0534 (13)−0.0043 (14)−0.0029 (12)−0.0094 (13)
C10.0596 (15)0.077 (2)0.0677 (16)0.0055 (16)0.0053 (13)−0.0158 (17)
C50.0649 (16)0.0735 (17)0.0478 (12)−0.0011 (14)−0.0084 (11)−0.0026 (13)
C60.0673 (16)0.092 (2)0.0511 (13)0.0086 (15)−0.0004 (12)−0.0171 (15)
C70.132 (3)0.100 (2)0.0542 (15)−0.003 (2)−0.0164 (17)−0.0124 (17)
C100.132 (3)0.092 (2)0.0633 (16)−0.020 (2)−0.0195 (18)0.0117 (17)
C110.126 (3)0.078 (2)0.0596 (16)0.022 (2)−0.0152 (17)−0.0160 (16)
C90.173 (3)0.094 (3)0.0678 (18)−0.024 (3)−0.037 (2)0.0227 (19)
C80.183 (4)0.150 (3)0.0514 (16)−0.022 (3)−0.016 (2)0.002 (2)
C130.161 (4)0.120 (3)0.137 (3)0.055 (3)−0.042 (3)−0.052 (3)
C140.165 (4)0.103 (3)0.152 (3)0.002 (3)0.053 (3)0.013 (3)
C180.0791 (18)0.0660 (18)0.0678 (15)−0.0153 (14)−0.0104 (14)0.0016 (14)
C190.0835 (19)0.0686 (19)0.0610 (15)−0.0105 (16)−0.0154 (14)−0.0090 (14)
C160.0752 (18)0.084 (2)0.0663 (16)−0.0017 (16)−0.0243 (13)−0.0002 (16)
C150.0592 (15)0.0720 (18)0.0760 (17)−0.0043 (13)−0.0121 (13)−0.0002 (15)
C170.087 (2)0.0695 (19)0.0700 (15)−0.0068 (17)−0.0108 (15)0.0073 (15)
C200.144 (3)0.112 (3)0.091 (2)−0.029 (2)−0.022 (2)0.040 (2)
N10.0670 (13)0.0634 (14)0.0601 (11)−0.0079 (12)−0.0147 (10)0.0039 (11)
O30.0557 (9)0.0823 (12)0.0436 (8)0.0034 (9)−0.0045 (7)−0.0074 (9)
O10.0577 (10)0.0779 (13)0.0719 (10)0.0108 (10)−0.0093 (9)−0.0086 (10)
O20.0908 (14)0.0731 (15)0.1237 (17)0.0195 (12)−0.0096 (12)−0.0176 (14)
C120.339 (7)0.136 (4)0.105 (3)−0.040 (5)−0.072 (4)0.049 (3)
Cl1—C21.708 (2)C8—H8B0.9700
C3—N11.327 (3)C13—H13A0.9600
C3—C21.366 (4)C13—H13B0.9600
C3—C41.519 (3)C13—H13C0.9600
C4—O31.381 (3)C14—H14A0.9600
C4—O11.435 (3)C14—H14B0.9600
C4—H40.9800C14—H14C0.9600
C2—C11.429 (4)C18—C191.495 (4)
C1—O21.206 (4)C18—C171.514 (4)
C1—O11.367 (3)C18—H18A0.9700
C5—O31.458 (3)C18—H18B0.9700
C5—C61.514 (4)C19—N11.468 (3)
C5—C101.520 (4)C19—H19A0.9700
C5—H50.9800C19—H19B0.9700
C6—C71.526 (4)C16—C151.504 (3)
C6—C111.529 (4)C16—C171.525 (4)
C6—H60.9800C16—H16A0.9700
C7—C81.516 (4)C16—H16B0.9700
C7—H7A0.9700C15—N11.460 (3)
C7—H7B0.9700C15—H15A0.9700
C10—C91.526 (4)C15—H15B0.9700
C10—H10A0.9700C17—C201.521 (4)
C10—H10B0.9700C17—H170.9800
C11—C141.484 (5)C20—H20A0.9600
C11—C131.516 (5)C20—H20B0.9600
C11—H110.9800C20—H20C0.9600
C9—C81.519 (5)C12—H12A0.9600
C9—C121.527 (5)C12—H12B0.9600
C9—H90.9800C12—H12C0.9600
C8—H8A0.9700
N1—C3—C2133.1 (2)C11—C13—H13B109.5
N1—C3—C4120.7 (2)H13A—C13—H13B109.5
C2—C3—C4106.1 (2)C11—C13—H13C109.5
O3—C4—O1111.37 (19)H13A—C13—H13C109.5
O3—C4—C3107.47 (18)H13B—C13—H13C109.5
O1—C4—C3105.0 (2)C11—C14—H14A109.5
O3—C4—H4110.9C11—C14—H14B109.5
O1—C4—H4110.9H14A—C14—H14B109.5
C3—C4—H4110.9C11—C14—H14C109.5
C3—C2—C1110.4 (2)H14A—C14—H14C109.5
C3—C2—Cl1130.7 (2)H14B—C14—H14C109.5
C1—C2—Cl1118.6 (2)C19—C18—C17112.4 (2)
O2—C1—O1120.2 (3)C19—C18—H18A109.1
O2—C1—C2131.1 (3)C17—C18—H18A109.1
O1—C1—C2108.7 (3)C19—C18—H18B109.1
O3—C5—C6107.9 (2)C17—C18—H18B109.1
O3—C5—C10108.7 (2)H18A—C18—H18B107.9
C6—C5—C10112.4 (2)N1—C19—C18110.9 (2)
O3—C5—H5109.2N1—C19—H19A109.5
C6—C5—H5109.2C18—C19—H19A109.5
C10—C5—H5109.2N1—C19—H19B109.5
C5—C6—C7109.6 (2)C18—C19—H19B109.5
C5—C6—C11114.4 (2)H19A—C19—H19B108.0
C7—C6—C11113.1 (2)C15—C16—C17111.3 (2)
C5—C6—H6106.3C15—C16—H16A109.4
C7—C6—H6106.3C17—C16—H16A109.4
C11—C6—H6106.3C15—C16—H16B109.4
C8—C7—C6112.4 (3)C17—C16—H16B109.4
C8—C7—H7A109.1H16A—C16—H16B108.0
C6—C7—H7A109.1N1—C15—C16111.1 (2)
C8—C7—H7B109.1N1—C15—H15A109.4
C6—C7—H7B109.1C16—C15—H15A109.4
H7A—C7—H7B107.8N1—C15—H15B109.4
C5—C10—C9112.4 (3)C16—C15—H15B109.4
C5—C10—H10A109.1H15A—C15—H15B108.0
C9—C10—H10A109.1C18—C17—C20112.2 (3)
C5—C10—H10B109.1C18—C17—C16108.8 (2)
C9—C10—H10B109.1C20—C17—C16111.1 (2)
H10A—C10—H10B107.9C18—C17—H17108.2
C14—C11—C13110.2 (4)C20—C17—H17108.2
C14—C11—C6114.0 (3)C16—C17—H17108.2
C13—C11—C6112.4 (3)C17—C20—H20A109.5
C14—C11—H11106.5C17—C20—H20B109.5
C13—C11—H11106.5H20A—C20—H20B109.5
C6—C11—H11106.5C17—C20—H20C109.5
C8—C9—C10108.7 (3)H20A—C20—H20C109.5
C8—C9—C12112.9 (4)H20B—C20—H20C109.5
C10—C9—C12110.2 (3)C3—N1—C15123.8 (2)
C8—C9—H9108.3C3—N1—C19123.74 (19)
C10—C9—H9108.3C15—N1—C19112.4 (2)
C12—C9—H9108.3C4—O3—C5115.85 (16)
C7—C8—C9111.0 (3)C1—O1—C4109.6 (2)
C7—C8—H8A109.4C9—C12—H12A109.5
C9—C8—H8A109.4C9—C12—H12B109.5
C7—C8—H8B109.4H12A—C12—H12B109.5
C9—C8—H8B109.4C9—C12—H12C109.5
H8A—C8—H8B108.0H12A—C12—H12C109.5
C11—C13—H13A109.5H12B—C12—H12C109.5
D—H···AD—HH···AD···AD—H···A
C4—H4···O2i0.982.443.376 (3)160
C18—H18B···O2ii0.972.543.393 (4)147
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C4—H4⋯O2i0.982.443.376 (3)160
C18—H18B⋯O2ii0.972.543.393 (4)147

Symmetry codes: (i) ; (ii) .

  3 in total

1.  Structure-activity relationship of brominated 3-alkyl-5-methylene-2(5H)-furanones and alkylmaleic anhydrides as inhibitors of Salmonella biofilm formation and quorum sensing regulated bioluminescence in Vibrio harveyi.

Authors:  Hans P Steenackers; Jeremy Levin; Joost C Janssens; Ami De Weerdt; Jan Balzarini; Jos Vanderleyden; Dirk E De Vos; Sigrid C De Keersmaecker
Journal:  Bioorg Med Chem       Date:  2010-05-25       Impact factor: 3.641

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Synthesis and antibacterial activities of 5-hydroxy-4-amino-2(5H)-furanones.

Authors:  Eric Lattmann; Simon Dunn; Suwanna Niamsanit; Nison Sattayasai
Journal:  Bioorg Med Chem Lett       Date:  2005-02-15       Impact factor: 2.823

  3 in total

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