Literature DB >> 21522404

4-Amino-3-methyl-benzoic acid-1,2-bis-(4-pyrid-yl)ethane (1/1).

Shie Fu Lush, Chong Wei Chen, Chieh Yang, Fwu Ming Shen.   

Abstract

In the crystal structure of the title 1:1 adduct, C(12)H(12)N(2)·C(8)H(9)NO(2), the 4-amino-3-methyl-benzoic acid mol-ecules and 1,2-bis-(4-pyrid-yl)ethane mol-ecules are linked by inter-molecular O-H⋯N, N-H⋯O and N-H⋯N hydrogen bonds, forming a two-dimensional supra-molecular network parallel to (001). In the 1,2-bis-(4-pyrid-yl)ethane mol-ecule, the two pyridine rings are twisted to each other by a dihedral angle of 12.12 (8)°. The non-H atoms of the 4-amino-3-methyl-benzoic acid mol-ecule are almost coplanar, the maximum atomic deviation being 0.029 (1) Å. Weak C-H⋯π inter-actions are present in the crystal structure.

Entities:  

Year:  2011        PMID: 21522404      PMCID: PMC3052056          DOI: 10.1107/S1600536811005381

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related structures, see: Bowes et al. (2003 ▶); Ferguson et al. (1999 ▶); Shen & Lush (2010 ▶). For hydrogen-bond motifs, see: Etter et al. (1990 ▶).

Experimental

Crystal data

C12H12N2·C8H9NO2 M = 335.40 Monoclinic, a = 8.0695 (3) Å b = 13.0677 (5) Å c = 17.6138 (10) Å β = 99.501 (5)° V = 1831.89 (15) Å3 Z = 4 Mo Kα radiation μ = 0.08 mm−1 T = 297 K 0.60 × 0.18 × 0.12 mm

Data collection

Oxford Diffraction Gemini-S CCD diffractometer Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2009 ▶) T min = 0.919, T max = 1.000 8821 measured reflections 4277 independent reflections 1870 reflections with I > 2σ(I) R int = 0.025

Refinement

R[F 2 > 2σ(F 2)] = 0.044 wR(F 2) = 0.082 S = 1.03 4277 reflections 232 parameters 3 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.15 e Å−3 Δρmin = −0.22 e Å−3 Data collection: CrysAlis CCD (Oxford Diffraction, 2008 ▶); cell refinement: CrysAlis RED (Oxford Diffraction, 2008 ▶); data reduction: CrysAlis RED; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: PLATON (Spek, 2009 ▶); software used to prepare material for publication: PLATON. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536811005381/xu5156sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536811005381/xu5156Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C12H12N2·C8H9NO2F(000) = 712
Mr = 335.40Dx = 1.216 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 2506 reflections
a = 8.0695 (3) Åθ = 3.0–29.0°
b = 13.0677 (5) ŵ = 0.08 mm1
c = 17.6138 (10) ÅT = 297 K
β = 99.501 (5)°Parallelepiped, colorless
V = 1831.89 (15) Å30.60 × 0.18 × 0.12 mm
Z = 4
Oxford Diffraction Gemini-S CCD diffractometer4277 independent reflections
Radiation source: fine-focus sealed tube1870 reflections with I > 2σ(I)
graphiteRint = 0.025
ω scansθmax = 29.1°, θmin = 3.0°
Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2009)h = −10→10
Tmin = 0.919, Tmax = 1.000k = −17→16
8821 measured reflectionsl = −24→20
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.044Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.082H atoms treated by a mixture of independent and constrained refinement
S = 1.03w = 1/[σ2(Fo2) + (0.025P)2] where P = (Fo2 + 2Fc2)/3
4277 reflections(Δ/σ)max < 0.001
232 parametersΔρmax = 0.15 e Å3
3 restraintsΔρmin = −0.22 e Å3
Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All su's are estimated from the variances of the (full) variance-covariance matrix. The cell e.s.d.'s are taken into account in the estimation of distances, angles and torsion angles
Refinement. Refinement on F2 for ALL reflections except those flagged by the user for potential systematic errors. Weighted R-factors wR and all goodnesses of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The observed criterion of F2 > σ(F2) is used only for calculating -R-factor-obs etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger.
xyzUiso*/Ueq
N20.63037 (17)0.47008 (10)0.62737 (9)0.0552 (6)
N31.58754 (19)0.08351 (11)0.60868 (10)0.0692 (7)
C90.7078 (2)0.47692 (12)0.56699 (11)0.0553 (7)
C100.8385 (2)0.41502 (12)0.55562 (10)0.0521 (7)
C110.8957 (2)0.34059 (12)0.60903 (11)0.0482 (7)
C120.8172 (2)0.33448 (13)0.67191 (11)0.0650 (8)
C130.6872 (2)0.39953 (15)0.67901 (11)0.0683 (8)
C141.0359 (2)0.26912 (12)0.59857 (12)0.0705 (8)
C151.2064 (2)0.30811 (12)0.62896 (11)0.0660 (7)
C161.3425 (2)0.23093 (12)0.62204 (11)0.0506 (7)
C171.4071 (2)0.16866 (14)0.68217 (11)0.0639 (8)
C181.5274 (2)0.09729 (14)0.67281 (12)0.0710 (8)
C191.5251 (2)0.14425 (15)0.55151 (12)0.0808 (9)
C201.4039 (2)0.21762 (13)0.55528 (11)0.0686 (8)
O10.34436 (14)0.56570 (8)0.63298 (7)0.0542 (5)
O20.47629 (14)0.71109 (8)0.61635 (7)0.0664 (5)
N1−0.25914 (19)0.86901 (13)0.64324 (10)0.0628 (7)
C10.34970 (19)0.66628 (12)0.62564 (9)0.0399 (4)
C20.18870 (19)0.71739 (11)0.63001 (9)0.0399 (4)
C30.04752 (18)0.66405 (11)0.64278 (9)0.0427 (6)
C4−0.09994 (19)0.71458 (11)0.64585 (9)0.0451 (6)
C5−0.11212 (19)0.82069 (12)0.63671 (9)0.0421 (6)
C60.0301 (2)0.87564 (11)0.62414 (9)0.0465 (6)
C70.17592 (19)0.82300 (11)0.62061 (9)0.0461 (6)
C80.0217 (2)0.99081 (11)0.61582 (12)0.0818 (9)
H9A0.671400.526600.530200.0660*
H10A0.888400.423200.512000.0620*
H12A0.851900.286100.710000.0780*
H13A0.636400.393700.722500.0820*
H14A1.019600.204900.623900.0850*
H14B1.029200.255000.544100.0850*
H15A1.211800.326400.682700.0790*
H15B1.226800.369600.601100.0790*
H17A1.369800.174600.729200.0770*
H18A1.569000.056100.714700.0850*
H19A1.565600.137200.505300.0970*
H20A1.364500.257700.512500.0820*
H1A0.4380 (9)0.5416 (12)0.6323 (10)0.082 (7)*
H1B−0.3449 (12)0.8295 (10)0.6418 (10)0.075 (7)*
H1C−0.2717 (19)0.9312 (4)0.6273 (8)0.055 (6)*
H3A0.052900.593400.649300.0510*
H4A−0.193700.677600.654200.0540*
H7A0.269800.859300.611600.0550*
H8A0.128101.016200.606500.1230*
H8B−0.004201.020600.662300.1230*
H8C−0.064201.008700.573400.1230*
U11U22U33U12U13U23
N20.0437 (9)0.0556 (9)0.0657 (11)0.0178 (7)0.0069 (9)0.0008 (8)
N30.0678 (11)0.0797 (11)0.0613 (12)0.0363 (9)0.0146 (9)0.0079 (10)
C90.0509 (12)0.0498 (10)0.0631 (14)0.0097 (9)0.0032 (10)0.0069 (10)
C100.0460 (11)0.0559 (11)0.0560 (13)0.0066 (9)0.0135 (9)−0.0026 (10)
C110.0385 (10)0.0426 (11)0.0617 (13)0.0093 (8)0.0030 (10)−0.0118 (10)
C120.0609 (13)0.0670 (12)0.0668 (14)0.0282 (10)0.0097 (11)0.0173 (11)
C130.0588 (13)0.0887 (14)0.0608 (14)0.0230 (11)0.0196 (10)0.0105 (12)
C140.0474 (12)0.0566 (11)0.1053 (17)0.0179 (10)0.0062 (11)−0.0171 (11)
C150.0442 (11)0.0605 (11)0.0922 (16)0.0139 (10)0.0082 (11)−0.0143 (11)
C160.0388 (11)0.0516 (11)0.0611 (14)0.0114 (9)0.0077 (10)−0.0091 (10)
C170.0597 (13)0.0812 (13)0.0535 (14)0.0216 (11)0.0173 (10)−0.0002 (11)
C180.0713 (14)0.0834 (15)0.0572 (15)0.0318 (11)0.0071 (12)0.0163 (11)
C190.0877 (16)0.1022 (16)0.0580 (15)0.0442 (14)0.0285 (12)0.0109 (13)
C200.0699 (14)0.0747 (13)0.0617 (15)0.0361 (11)0.0127 (11)0.0150 (11)
O10.0387 (8)0.0491 (7)0.0761 (9)0.0153 (6)0.0130 (7)−0.0007 (6)
O20.0306 (7)0.0689 (8)0.1025 (10)−0.0004 (6)0.0192 (7)0.0135 (7)
N10.0418 (10)0.0476 (10)0.1012 (14)0.0112 (9)0.0184 (10)−0.0012 (10)
C10.0324 (7)0.0430 (7)0.0442 (7)0.0040 (5)0.0058 (5)−0.0032 (6)
C20.0324 (7)0.0430 (7)0.0442 (7)0.0040 (5)0.0058 (5)−0.0032 (6)
C30.0354 (10)0.0332 (8)0.0604 (12)0.0031 (8)0.0109 (8)−0.0035 (8)
C40.0313 (10)0.0403 (10)0.0651 (13)−0.0011 (8)0.0123 (8)−0.0038 (8)
C50.0316 (9)0.0430 (10)0.0519 (12)0.0085 (8)0.0072 (8)−0.0072 (9)
C60.0411 (11)0.0378 (9)0.0606 (13)0.0039 (9)0.0088 (9)−0.0002 (9)
C70.0354 (10)0.0444 (10)0.0594 (12)−0.0042 (8)0.0109 (9)0.0003 (9)
C80.0647 (14)0.0445 (11)0.138 (2)0.0047 (9)0.0217 (13)0.0091 (11)
O1—C11.3221 (19)C13—H13A0.9300
O2—C11.2118 (19)C14—H14A0.9700
O1—H1A0.821 (9)C14—H14B0.9700
N2—C131.323 (2)C15—H15B0.9700
N2—C91.322 (2)C15—H15A0.9700
N3—C181.313 (3)C17—H17A0.9300
N3—C191.315 (3)C18—H18A0.9300
N1—C51.366 (2)C19—H19A0.9300
N1—H1C0.860 (7)C20—H20A0.9300
N1—H1B0.860 (11)C1—C21.474 (2)
C9—C101.370 (2)C2—C31.385 (2)
C10—C111.379 (2)C2—C71.392 (2)
C11—C121.366 (3)C3—C41.370 (2)
C11—C141.502 (2)C4—C51.398 (2)
C12—C131.372 (2)C5—C61.402 (2)
C14—C151.482 (2)C6—C71.373 (2)
C15—C161.511 (2)C6—C81.513 (2)
C16—C171.369 (3)C3—H3A0.9300
C16—C201.360 (3)C4—H4A0.9300
C17—C181.376 (2)C7—H7A0.9300
C19—C201.379 (2)C8—H8A0.9600
C9—H9A0.9300C8—H8B0.9600
C10—H10A0.9300C8—H8C0.9600
C12—H12A0.9300
C1—O1—H1A109.6 (10)H15A—C15—H15B108.00
C9—N2—C13116.35 (14)C14—C15—H15A109.00
C18—N3—C19115.24 (16)C16—C17—H17A120.00
H1B—N1—H1C120.4 (14)C18—C17—H17A120.00
C5—N1—H1B115.2 (8)N3—C18—H18A118.00
C5—N1—H1C117.8 (10)C17—C18—H18A118.00
N2—C9—C10123.71 (16)C20—C19—H19A118.00
C9—C10—C11119.73 (16)N3—C19—H19A118.00
C10—C11—C12116.53 (15)C16—C20—H20A120.00
C10—C11—C14121.95 (16)C19—C20—H20A120.00
C12—C11—C14121.52 (16)O2—C1—C2123.92 (14)
C11—C12—C13120.11 (17)O1—C1—O2122.37 (14)
N2—C13—C12123.55 (17)O1—C1—C2113.71 (13)
C11—C14—C15114.53 (14)C1—C2—C7119.45 (14)
C14—C15—C16112.66 (14)C3—C2—C7118.13 (14)
C15—C16—C17121.57 (16)C1—C2—C3122.42 (13)
C15—C16—C20121.90 (16)C2—C3—C4120.46 (14)
C17—C16—C20116.51 (16)C3—C4—C5121.25 (14)
C16—C17—C18119.77 (17)N1—C5—C4119.65 (15)
N3—C18—C17124.36 (18)N1—C5—C6121.45 (15)
N3—C19—C20124.59 (18)C4—C5—C6118.85 (14)
C16—C20—C19119.53 (17)C5—C6—C8120.01 (14)
C10—C9—H9A118.00C7—C6—C8121.27 (14)
N2—C9—H9A118.00C5—C6—C7118.72 (14)
C9—C10—H10A120.00C2—C7—C6122.58 (14)
C11—C10—H10A120.00C2—C3—H3A120.00
C11—C12—H12A120.00C4—C3—H3A120.00
C13—C12—H12A120.00C3—C4—H4A119.00
C12—C13—H13A118.00C5—C4—H4A119.00
N2—C13—H13A118.00C2—C7—H7A119.00
C11—C14—H14A109.00C6—C7—H7A119.00
C11—C14—H14B109.00C6—C8—H8A109.00
H14A—C14—H14B108.00C6—C8—H8B109.00
C15—C14—H14A109.00C6—C8—H8C109.00
C15—C14—H14B109.00H8A—C8—H8B109.00
C16—C15—H15A109.00H8A—C8—H8C110.00
C14—C15—H15B109.00H8B—C8—H8C110.00
C16—C15—H15B109.00
C13—N2—C9—C100.9 (3)C16—C17—C18—N30.0 (3)
C9—N2—C13—C12−1.0 (3)N3—C19—C20—C160.6 (3)
C19—N3—C18—C170.4 (3)O1—C1—C2—C31.7 (2)
C18—N3—C19—C20−0.7 (3)O1—C1—C2—C7−177.92 (14)
N2—C9—C10—C110.0 (3)O2—C1—C2—C3−178.20 (16)
C9—C10—C11—C12−0.9 (2)O2—C1—C2—C72.2 (2)
C9—C10—C11—C14178.60 (16)C1—C2—C3—C4−179.52 (15)
C10—C11—C12—C130.8 (3)C7—C2—C3—C40.1 (2)
C14—C11—C12—C13−178.66 (16)C1—C2—C7—C6−179.85 (15)
C10—C11—C14—C1587.8 (2)C3—C2—C7—C60.5 (2)
C12—C11—C14—C15−92.8 (2)C2—C3—C4—C5−0.4 (2)
C11—C12—C13—N20.1 (3)C3—C4—C5—N1−177.34 (16)
C11—C14—C15—C16176.12 (16)C3—C4—C5—C60.0 (2)
C14—C15—C16—C17−96.3 (2)N1—C5—C6—C7177.88 (16)
C14—C15—C16—C2081.9 (2)N1—C5—C6—C8−1.3 (2)
C15—C16—C17—C18178.08 (16)C4—C5—C6—C70.6 (2)
C20—C16—C17—C18−0.1 (2)C4—C5—C6—C8−178.64 (15)
C15—C16—C20—C19−178.34 (16)C5—C6—C7—C2−0.9 (2)
C17—C16—C20—C19−0.1 (2)C8—C6—C7—C2178.32 (16)
Cg is the centroid of the C2–C7 ring.
D—H···AD—HH···AD···AD—H···A
O1—H1A···N20.821 (9)1.826 (11)2.6407 (18)171.6 (15)
N1—H1B···O2i0.860 (11)2.113 (12)2.951 (2)164.5 (14)
N1—H1C···N3ii0.860 (7)2.288 (9)3.084 (2)153.8 (14)
C12—H12A···Cgiii0.932.763.540 (2)141
Table 1

Hydrogen-bond geometry (Å, °)

Cg is the centroid of the C2–C7 ring.

D—H⋯AD—HH⋯ADAD—H⋯A
O1—H1A⋯N20.821 (9)1.826 (11)2.6407 (18)171.6 (15)
N1—H1B⋯O2i0.860 (11)2.113 (12)2.951 (2)164.5 (14)
N1—H1C⋯N3ii0.860 (7)2.288 (9)3.084 (2)153.8 (14)
C12—H12ACgiii0.932.763.540 (2)141

Symmetry codes: (i) ; (ii) ; (iii) .

  6 in total

1.  Salts of maleic and fumaric acids with organic polyamines: comparison of isomeric acids as building blocks in supramolecular chemistry.

Authors:  Katharine F Bowes; George Ferguson; Alan J Lough; Christopher Glidewell
Journal:  Acta Crystallogr B       Date:  2003-01-28

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Graph-set analysis of hydrogen-bond patterns in organic crystals.

Authors:  M C Etter; J C MacDonald; J Bernstein
Journal:  Acta Crystallogr B       Date:  1990-04-01

4.  Crystal engineering using bisphenols: interwoven ladders, sheet and framework structures in the binary adducts of 4,4'-sulfonyldiphenol with pyrazine (2/1), 4,4'-bipyridyl (1/1), trans-1,2-bis(4-pyridyl)ethene (1/1), 1,2-bis(4-pyridyl)ethane (1/1) and 4,4'-trimethylenedipyridine (1/1), and in 4,4'-sulfonyldiphenol-4,4'-trimethylenedipiperidine-water (2/2/1).

Authors: 
Journal:  Acta Crystallogr B       Date:  1999-08-01

5.  3-Amino-benzoic acid-1,2-bis-(4-pyrid-yl)ethane (1/1).

Authors:  Fwu Ming Shen; Shie Fu Lush
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-04-24

6.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  6 in total

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