Literature DB >> 21522375

endo-11-(Dibenzyl-amino)-tetra-cyclo-[5.4.0.0.0]undecane-8-one.

Rajshekhar Karpoormath, Patrick Govender, Thavendran Govender, Hendrik G Kruger, Glenn E M Maguire.   

Abstract

The structure of the title compound, C(25)H(27)NO, is a mono-ketone penta-cyclo-undecane (PCU) mol-ecule bearing a tertiary amine group. One of the methyl-ene groups in the PCU is disordered over two orientations with site-occupancy factors of 0.621 (7) and 0.379 (7).

Entities:  

Year:  2011        PMID: 21522375      PMCID: PMC3051940          DOI: 10.1107/S160053681100479X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For mono-ketone PCU derivatives, see: Kruger et al. (2006) ▶. For examples of the crystal structures of mono-ketone PCU mol­ecules bearing heteroatoms, see: Watson et al. (2000) ▶; Karpoormath et al. (2010 ▶).

Experimental

Crystal data

C25H21NO M = 351.43 Monoclinic, a = 6.6117 (3) Å b = 16.4344 (7) Å c = 17.2331 (8) Å β = 97.100 (2)° V = 1858.18 (14) Å3 Z = 4 Cu Kα radiation μ = 0.59 mm−1 T = 173 K 0.43 × 0.33 × 0.25 mm

Data collection

Bruker Kappa DUO APEXII diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2006 ▶) T min = 0.786, T max = 0.867 24662 measured reflections 3303 independent reflections 3240 reflections with I > 2σ(I) R int = 0.018

Refinement

R[F 2 > 2σ(F 2)] = 0.066 wR(F 2) = 0.173 S = 1.06 3303 reflections 255 parameters 24 restraints H-atom parameters constrained Δρmax = 0.48 e Å−3 Δρmin = −0.46 e Å−3 Data collection: APEX2 (Bruker, 2006 ▶); cell refinement: SAINT (Bruker, 2006 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: X-SEED (Barbour, 2001 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks I, global. DOI: 10.1107/S160053681100479X/lx2177sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S160053681100479X/lx2177Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C25H21NOF(000) = 744
Mr = 351.43Dx = 1.256 Mg m3
Monoclinic, P21/nCu Kα radiation, λ = 1.54184 Å
Hall symbol: -P 2ynCell parameters from 3299 reflections
a = 6.6117 (3) Åθ = 5.2–69.2°
b = 16.4344 (7) ŵ = 0.59 mm1
c = 17.2331 (8) ÅT = 173 K
β = 97.100 (2)°Needle, colourless
V = 1858.18 (14) Å30.43 × 0.33 × 0.25 mm
Z = 4
Bruker Kappa DUO APEXII diffractometer3303 independent reflections
Radiation source: fine-focus sealed tube3240 reflections with I > 2σ(I)
graphiteRint = 0.018
1.2° φ scans and ωθmax = 69.2°, θmin = 3.7°
Absorption correction: multi-scan (SADABS; Bruker, 2006)h = −7→7
Tmin = 0.786, Tmax = 0.867k = −19→19
24662 measured reflectionsl = −20→20
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.066H-atom parameters constrained
wR(F2) = 0.173w = 1/[σ2(Fo2) + (0.080P)2 + 1.983P] where P = (Fo2 + 2Fc2)/3
S = 1.06(Δ/σ)max < 0.001
3303 reflectionsΔρmax = 0.48 e Å3
255 parametersΔρmin = −0.46 e Å3
24 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.0020 (4)
Experimental. Half sphere of data collected using APEX2 (Bruker, 2006). Crystal to detector distance = 45 mm; combination of φ and ω scans of 1.2°, 50 s per °, 2 iterations.
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
O10.1742 (2)0.13889 (10)0.19402 (10)0.0394 (4)
N1−0.2672 (3)0.05165 (10)0.14408 (10)0.0271 (4)
C2−0.4175 (5)0.27147 (16)0.1215 (3)0.0763 (12)
C3−0.3558 (3)0.19546 (14)0.17218 (17)0.0423 (6)
H3−0.44380.18570.21450.051*
C4−0.3624 (3)0.12730 (13)0.11264 (14)0.0347 (5)
H4−0.50770.11600.09200.042*
C5−0.2577 (4)0.16781 (17)0.04842 (17)0.0493 (7)
H5−0.27590.1387−0.00290.059*
C6−0.3393 (6)0.25559 (17)0.04539 (18)0.0652 (10)
C7−0.1306 (5)0.30438 (16)0.16140 (19)0.0612 (9)
C8−0.1293 (3)0.22060 (14)0.20361 (17)0.0422 (6)
H8−0.09910.22330.26190.051*
C90.0227 (3)0.17342 (14)0.16393 (15)0.0361 (5)
C10−0.0309 (4)0.19225 (18)0.07827 (17)0.0497 (7)
H100.07300.17600.04370.060*
C11−0.0792 (5)0.2836 (2)0.0801 (2)0.0775 (12)
C12−0.3867 (3)0.01601 (13)0.20230 (13)0.0311 (5)
H12A−0.3795−0.04400.19820.037*
H12B−0.53110.03180.18840.037*
C13−0.3230 (3)0.03943 (13)0.28639 (13)0.0307 (5)
C14−0.4688 (4)0.04214 (14)0.33779 (14)0.0372 (5)
H14−0.60850.03470.31850.045*
C15−0.4127 (4)0.05563 (15)0.41683 (15)0.0436 (6)
H15−0.51390.05680.45140.052*
C16−0.2108 (4)0.06739 (16)0.44562 (15)0.0467 (6)
H16−0.17220.07610.49990.056*
C17−0.0654 (4)0.06631 (17)0.39452 (15)0.0452 (6)
H170.07360.07550.41380.054*
C18−0.1200 (4)0.05196 (15)0.31545 (14)0.0384 (6)
H18−0.01840.05070.28100.046*
C19−0.2474 (4)−0.00746 (14)0.08166 (13)0.0349 (5)
H19A−0.17910.01900.04030.042*
H19B−0.3851−0.02440.05800.042*
C20−0.1277 (3)−0.08185 (13)0.11058 (12)0.0312 (5)
C210.0737 (3)−0.07388 (14)0.14401 (14)0.0381 (5)
H210.1342−0.02140.14960.046*
C220.1864 (4)−0.14184 (16)0.16920 (16)0.0434 (6)
H220.3238−0.13570.19210.052*
C230.1013 (4)−0.21862 (15)0.16137 (15)0.0416 (6)
H230.1796−0.26520.17850.050*
C24−0.0992 (4)−0.22698 (15)0.12834 (15)0.0413 (6)
H24−0.1593−0.27950.12280.050*
C25−0.2121 (4)−0.15900 (14)0.10333 (14)0.0363 (5)
H25−0.3498−0.16530.08080.044*
C1A−0.3205 (6)0.3417 (2)0.1498 (2)0.0414 (11)0.621 (7)
H1A−0.36730.36120.19890.050*0.621 (7)
H1B−0.32810.38600.11060.050*0.621 (7)
C1B−0.2299 (8)0.3246 (3)0.0321 (4)0.0458 (19)0.379 (7)
H1D−0.27910.37530.05460.055*0.379 (7)
H1C−0.20200.3321−0.02250.055*0.379 (7)
U11U22U33U12U13U23
O10.0224 (8)0.0389 (9)0.0564 (10)0.0003 (6)0.0031 (7)0.0051 (7)
N10.0261 (9)0.0239 (9)0.0310 (9)0.0000 (7)0.0019 (7)0.0019 (7)
C20.0606 (19)0.0306 (14)0.148 (3)0.0175 (13)0.055 (2)0.0285 (18)
C30.0238 (11)0.0256 (12)0.0770 (18)0.0021 (9)0.0049 (11)−0.0047 (11)
C40.0248 (10)0.0278 (11)0.0495 (13)0.0006 (8)−0.0037 (9)0.0082 (10)
C50.0439 (14)0.0489 (16)0.0522 (15)−0.0049 (12)−0.0061 (12)0.0247 (12)
C60.092 (2)0.0341 (14)0.0589 (17)−0.0159 (15)−0.0342 (16)0.0170 (13)
C70.0715 (19)0.0268 (13)0.075 (2)0.0005 (12)−0.0338 (16)−0.0049 (13)
C80.0278 (12)0.0284 (12)0.0699 (17)−0.0016 (9)0.0041 (11)−0.0090 (11)
C90.0243 (11)0.0292 (11)0.0549 (14)−0.0052 (9)0.0055 (10)0.0056 (10)
C100.0382 (13)0.0525 (16)0.0595 (16)−0.0045 (11)0.0098 (12)0.0249 (13)
C110.066 (2)0.059 (2)0.117 (3)0.0220 (16)0.050 (2)0.052 (2)
C120.0262 (10)0.0269 (11)0.0404 (12)−0.0041 (8)0.0055 (9)0.0009 (9)
C130.0311 (11)0.0240 (10)0.0378 (12)0.0013 (8)0.0069 (9)0.0060 (9)
C140.0361 (12)0.0309 (12)0.0464 (13)0.0036 (9)0.0124 (10)0.0049 (10)
C150.0570 (16)0.0351 (13)0.0423 (13)0.0077 (11)0.0206 (12)0.0067 (10)
C160.0684 (18)0.0373 (13)0.0338 (12)0.0072 (12)0.0040 (12)0.0047 (10)
C170.0445 (14)0.0483 (15)0.0405 (13)0.0008 (11)−0.0041 (11)0.0043 (11)
C180.0327 (12)0.0435 (14)0.0391 (13)0.0013 (10)0.0053 (10)0.0051 (10)
C190.0376 (12)0.0351 (12)0.0301 (11)0.0035 (9)−0.0027 (9)−0.0024 (9)
C200.0345 (11)0.0303 (11)0.0287 (10)0.0012 (9)0.0032 (9)−0.0043 (9)
C210.0333 (12)0.0302 (12)0.0498 (14)−0.0017 (9)0.0011 (10)−0.0011 (10)
C220.0316 (12)0.0429 (14)0.0542 (15)0.0035 (10)−0.0005 (11)0.0025 (11)
C230.0460 (14)0.0342 (13)0.0459 (14)0.0110 (10)0.0104 (11)0.0051 (10)
C240.0497 (14)0.0287 (12)0.0467 (14)−0.0026 (10)0.0111 (11)−0.0053 (10)
C250.0351 (12)0.0348 (12)0.0384 (12)−0.0025 (9)0.0020 (9)−0.0085 (10)
C1A0.052 (2)0.0290 (19)0.043 (2)0.0039 (16)0.0042 (17)0.0013 (15)
C1B0.062 (4)0.031 (3)0.046 (3)0.002 (3)0.013 (3)0.005 (3)
O1—C91.211 (3)C13—C141.388 (3)
N1—C41.467 (3)C14—C151.385 (4)
N1—C191.467 (3)C14—H140.9500
N1—C121.473 (3)C15—C161.379 (4)
C2—C1A1.380 (4)C15—H150.9500
C2—C61.491 (5)C16—C171.382 (4)
C2—C31.550 (4)C16—H160.9500
C3—C41.516 (3)C17—C181.386 (4)
C3—C81.583 (3)C17—H170.9500
C3—H31.0000C18—H180.9500
C4—C51.529 (3)C19—C201.507 (3)
C4—H41.0000C19—H19A0.9900
C5—C61.539 (4)C19—H19B0.9900
C5—C101.576 (4)C20—C251.385 (3)
C5—H51.0000C20—C211.390 (3)
C6—C1B1.379 (4)C21—C221.383 (3)
C7—C1A1.389 (4)C21—H210.9500
C7—C111.522 (5)C22—C231.381 (4)
C7—C81.557 (4)C22—H220.9500
C8—C91.500 (3)C23—C241.383 (4)
C8—H81.0000C23—H230.9500
C9—C101.507 (4)C24—C251.383 (3)
C10—C111.536 (4)C24—H240.9500
C10—H101.0000C25—H250.9500
C11—C1B1.387 (4)C1A—H1A0.9900
C12—C131.508 (3)C1A—H1B0.9900
C12—H12A0.9900C1B—H1D0.9900
C12—H12B0.9900C1B—H1C0.9900
C13—C181.388 (3)
C4—N1—C19111.32 (17)C18—C13—C14118.8 (2)
C4—N1—C12110.30 (16)C18—C13—C12121.8 (2)
C19—N1—C12109.88 (17)C14—C13—C12119.2 (2)
C1A—C2—C6105.1 (3)C15—C14—C13120.7 (2)
C1A—C2—C3113.4 (3)C15—C14—H14119.7
C6—C2—C3105.0 (2)C13—C14—H14119.7
C4—C3—C2103.3 (2)C16—C15—C14120.4 (2)
C4—C3—C8111.81 (19)C16—C15—H15119.8
C2—C3—C898.9 (2)C14—C15—H15119.8
C4—C3—H3113.8C15—C16—C17119.2 (2)
C2—C3—H3113.8C15—C16—H16120.4
C8—C3—H3113.8C17—C16—H16120.4
N1—C4—C3113.65 (19)C16—C17—C18120.8 (2)
N1—C4—C5115.1 (2)C16—C17—H17119.6
C3—C4—C5101.0 (2)C18—C17—H17119.6
N1—C4—H4108.9C17—C18—C13120.2 (2)
C3—C4—H4108.9C17—C18—H18119.9
C5—C4—H4108.9C13—C18—H18119.9
C4—C5—C6104.2 (2)N1—C19—C20112.67 (17)
C4—C5—C10111.9 (2)N1—C19—H19A109.1
C6—C5—C1095.0 (2)C20—C19—H19A109.1
C4—C5—H5114.6N1—C19—H19B109.1
C6—C5—H5114.6C20—C19—H19B109.1
C10—C5—H5114.6H19A—C19—H19B107.8
C1B—C6—C2104.3 (4)C25—C20—C21118.6 (2)
C1B—C6—C5126.0 (4)C25—C20—C19121.6 (2)
C2—C6—C5107.0 (2)C21—C20—C19119.8 (2)
C1A—C7—C11105.5 (3)C22—C21—C20120.4 (2)
C1A—C7—C8114.2 (3)C22—C21—H21119.8
C11—C7—C8104.1 (2)C20—C21—H21119.8
C9—C8—C7102.1 (2)C23—C22—C21120.6 (2)
C9—C8—C3111.6 (2)C23—C22—H22119.7
C7—C8—C396.9 (2)C21—C22—H22119.7
C9—C8—H8114.7C22—C23—C24119.3 (2)
C7—C8—H8114.7C22—C23—H23120.4
C3—C8—H8114.7C24—C23—H23120.4
O1—C9—C8127.8 (2)C25—C24—C23120.1 (2)
O1—C9—C10126.7 (2)C25—C24—H24120.0
C8—C9—C10104.5 (2)C23—C24—H24120.0
C9—C10—C11101.8 (3)C24—C25—C20121.0 (2)
C9—C10—C5111.5 (2)C24—C25—H25119.5
C11—C10—C593.7 (2)C20—C25—H25119.5
C9—C10—H10115.7C2—C1A—C793.1 (3)
C11—C10—H10115.7C2—C1A—H1A113.1
C5—C10—H10115.7C7—C1A—H1A113.1
C1B—C11—C7102.3 (4)C2—C1A—H1B113.1
C1B—C11—C10126.7 (4)C7—C1A—H1B113.1
C7—C11—C10108.0 (2)H1A—C1A—H1B110.5
N1—C12—C13116.31 (17)C6—C1B—C1181.7 (3)
N1—C12—H12A108.2C6—C1B—H1D115.0
C13—C12—H12A108.2C11—C1B—H1D115.0
N1—C12—H12B108.2C6—C1B—H1C115.0
C13—C12—H12B108.2C11—C1B—H1C115.0
H12A—C12—H12B107.4H1D—C1B—H1C112.1
C1A—C2—C3—C4−145.8 (3)C4—C5—C10—C11−107.2 (3)
C6—C2—C3—C4−31.6 (3)C6—C5—C10—C110.3 (3)
C1A—C2—C3—C8−30.7 (3)C1A—C7—C11—C1B10.1 (3)
C6—C2—C3—C883.4 (3)C8—C7—C11—C1B130.7 (3)
C19—N1—C4—C3−170.57 (19)C1A—C7—C11—C10−125.5 (3)
C12—N1—C4—C367.2 (2)C8—C7—C11—C10−4.9 (3)
C19—N1—C4—C5−54.8 (3)C9—C10—C11—C1B−142.8 (4)
C12—N1—C4—C5−177.03 (19)C5—C10—C11—C1B−29.9 (5)
C2—C3—C4—N1167.47 (19)C9—C10—C11—C7−21.3 (3)
C8—C3—C4—N162.0 (3)C5—C10—C11—C791.6 (3)
C2—C3—C4—C543.6 (2)C4—N1—C12—C13−92.8 (2)
C8—C3—C4—C5−61.8 (2)C19—N1—C12—C13144.12 (18)
N1—C4—C5—C6−162.24 (19)N1—C12—C13—C18−35.2 (3)
C3—C4—C5—C6−39.4 (2)N1—C12—C13—C14150.2 (2)
N1—C4—C5—C10−60.8 (3)C18—C13—C14—C15−1.1 (3)
C3—C4—C5—C1062.1 (3)C12—C13—C14—C15173.7 (2)
C1A—C2—C6—C1B−8.8 (3)C13—C14—C15—C160.6 (4)
C3—C2—C6—C1B−128.7 (3)C14—C15—C16—C170.6 (4)
C1A—C2—C6—C5126.6 (3)C15—C16—C17—C18−1.3 (4)
C3—C2—C6—C56.7 (3)C16—C17—C18—C130.8 (4)
C4—C5—C6—C1B143.1 (4)C14—C13—C18—C170.4 (4)
C10—C5—C6—C1B29.1 (5)C12—C13—C18—C17−174.3 (2)
C4—C5—C6—C220.3 (3)C4—N1—C19—C20173.10 (18)
C10—C5—C6—C2−93.7 (3)C12—N1—C19—C20−64.4 (2)
C1A—C7—C8—C9144.0 (3)N1—C19—C20—C25120.5 (2)
C11—C7—C8—C929.5 (3)N1—C19—C20—C21−60.8 (3)
C1A—C7—C8—C330.1 (3)C25—C20—C21—C220.1 (4)
C11—C7—C8—C3−84.4 (2)C19—C20—C21—C22−178.6 (2)
C4—C3—C8—C92.7 (3)C20—C21—C22—C230.2 (4)
C2—C3—C8—C9−105.6 (3)C21—C22—C23—C24−0.4 (4)
C4—C3—C8—C7108.6 (2)C22—C23—C24—C250.2 (4)
C2—C3—C8—C70.3 (3)C23—C24—C25—C200.1 (4)
C7—C8—C9—O1124.9 (3)C21—C20—C25—C24−0.3 (3)
C3—C8—C9—O1−132.5 (3)C19—C20—C25—C24178.4 (2)
C7—C8—C9—C10−44.2 (2)C6—C2—C1A—C7−67.4 (3)
C3—C8—C9—C1058.4 (3)C3—C2—C1A—C746.7 (4)
O1—C9—C10—C11−128.6 (3)C11—C7—C1A—C266.7 (3)
C8—C9—C10—C1140.7 (2)C8—C7—C1A—C2−46.9 (4)
O1—C9—C10—C5132.6 (3)C2—C6—C1B—C1183.9 (4)
C8—C9—C10—C5−58.1 (3)C5—C6—C1B—C11−40.0 (5)
C4—C5—C10—C9−2.9 (3)C7—C11—C1B—C6−82.9 (4)
C6—C5—C10—C9104.5 (3)C10—C11—C1B—C640.9 (5)
  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  tert-Butyl N-[(11-exo-benzyl-oxy-carbonyl-8-oxopenta-cyclo-[5.4.0.0.0.0]undecane-11-endo-yloxy)carbon-yl-methyl]carbamate.

Authors:  Rajshekhar Karpoormath; Thavendran Govender; Patrick Govender; Hendrik G Kruger; Glenn E M Maguire
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-09-25
  2 in total

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