Literature DB >> 21522350

4,4'-Bipyridine-5-fluoro-isophthalic acid (1/1).

Jin-Lai Qin1.   

Abstract

Co-crystallization of 5-fluoro-isophthalic acid (H(2)fip) with n class="Chemical">4,4'-bipyridine (bipy) leads to the formation of the title compound [(H(2)fip)(bipy)], C(8)H(5)FO(4)·C(10)H(8)N(2), with an acid-base molar ratio of 1:1. The acid and base subunits are arrange alternately in the crystal structure, displaying a wave-like tape motif via inter-molecular O-H⋯N and C-H⋯O hydrogen bonds [carbox-yl-pyridine synthon of R(2) (2)(7) hydrogen-bond notation], which are further combined into a two-dimensional architecture through C-H⋯F inter-actions involving the bipy and H(2)fip mol-ecules.

Entities:  

Year:  2011        PMID: 21522350      PMCID: PMC3052053          DOI: 10.1107/S1600536811004016

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the supra­molecular synthon approach in crystal engineering, see: Desiraju (1995 ▶); Nangia & Desiraju (1998 ▶). For background to co-crystallization, see: Aakeröy & Salmon (2005 ▶); Sharma & Zaworotko (1996 ▶); Schultheiss & n class="Chemical">Newman (2009 ▶). For co-crystals with a carbox­yl–pyridyl heterosynthon, see: Etter (1990 ▶); Shan et al. (2002 ▶); Du et al. (2005 ▶). For co-crystals of halogen-substituted dicarb­oxy­lic acids, see: He et al. (2009 ▶).

Experimental

Crystal data

C8H5FO4·C10H8N2 M = 340.30 Monoclinic, a = 7.1711 (13) Å b = 20.106 (4) Å c = 11.272 (2) Å β = 106.781 (2)° V = 1556.0 (5) Å3 Z = 4 Mo Kα radiation μ = 0.11 mm−1 T = 296 K 0.34 × 0.32 × 0.32 mm

Data collection

Bruker APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 2003 ▶) T min = 0.963, T max = 0.967 11109 measured reflections 2742 independent reflections 1956 reflections with I > 2σ(I) R int = 0.042

Refinement

R[F 2 > 2σ(F 2)] = 0.059 wR(F 2) = 0.166 S = 1.09 2742 reflections 228 parameters 1 restraint H-atom parameters constrained Δρmax = 0.72 e Å−3 Δρmin = −0.33 e Å−3 Data collection: APEX2 (Bruker, 2007 ▶); cell refinement: APEX2 and SAINT (Bruker, 2007 ▶); data reduction: SAIn class="Chemical">NT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL and DIAMOND (Brandenburg, 2005 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536811004016/vm2069sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536811004016/vm2069Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C8H5FO4·C10H8N2F(000) = 704
Mr = 340.30Dx = 1.453 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 2260 reflections
a = 7.1711 (13) Åθ = 2.1–21.8°
b = 20.106 (4) ŵ = 0.11 mm1
c = 11.272 (2) ÅT = 296 K
β = 106.781 (2)°Block, colorless
V = 1556.0 (5) Å30.34 × 0.32 × 0.32 mm
Z = 4
Bruker APEXII CCD area-detector diffractometer2742 independent reflections
Radiation source: fine-focus sealed tube1956 reflections with I > 2σ(I)
graphiteRint = 0.042
φ and ω scansθmax = 25.0°, θmin = 2.0°
Absorption correction: multi-scan (SADABS; Sheldrick, 2003)h = −8→8
Tmin = 0.963, Tmax = 0.967k = −23→22
11109 measured reflectionsl = −13→13
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.059Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.166H-atom parameters constrained
S = 1.09w = 1/[σ2(Fo2) + (0.067P)2 + 1.097P] where P = (Fo2 + 2Fc2)/3
2742 reflections(Δ/σ)max < 0.001
228 parametersΔρmax = 0.72 e Å3
1 restraintΔρmin = −0.33 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.2245 (5)0.3051 (2)−0.1085 (3)0.0680 (10)
H10.25290.2771−0.16670.082*
C20.2595 (5)0.28299 (18)0.0108 (3)0.0578 (9)
H20.31030.24060.03190.069*
C30.2198 (4)0.32356 (15)0.1013 (3)0.0463 (7)
C40.1530 (5)0.38653 (18)0.0671 (3)0.0618 (9)
H40.12930.41630.12420.074*
C50.1208 (5)0.40493 (18)−0.0617 (4)0.0681 (9)
H50.07600.4475−0.08700.082*
C60.2374 (4)0.29661 (14)0.2275 (2)0.0390 (6)
C70.2065 (4)0.22960 (14)0.2432 (3)0.0472 (7)
H70.18090.20090.17580.057*
C80.2138 (5)0.20553 (15)0.3592 (3)0.0484 (7)
H80.19270.16030.36720.058*
C90.2766 (5)0.33605 (15)0.3328 (3)0.0512 (8)
H90.29990.38130.32790.061*
C100.2807 (5)0.30759 (15)0.4452 (3)0.0522 (8)
H100.30700.33500.51460.063*
C110.1900 (4)0.11407 (14)0.6366 (3)0.0420 (7)
C120.1879 (4)0.07233 (13)0.7462 (2)0.0374 (6)
C130.2825 (4)0.09158 (14)0.8674 (2)0.0401 (7)
H130.34530.13250.88290.048*
C140.2827 (4)0.04932 (14)0.9653 (2)0.0431 (7)
C150.1878 (5)−0.01089 (15)0.9423 (3)0.0498 (8)
H150.1868−0.03931.00720.060*
C160.0951 (5)−0.02820 (14)0.8225 (3)0.0482 (7)
C170.0933 (4)0.01109 (14)0.7225 (3)0.0424 (7)
H170.0313−0.00270.64200.051*
C180.3876 (5)0.06363 (18)1.0980 (3)0.0558 (9)
F10.0045 (3)−0.08851 (9)0.80111 (18)0.0751 (7)
N10.1528 (4)0.36369 (18)−0.1434 (3)0.0707 (8)
N20.2493 (4)0.24332 (12)0.4599 (2)0.0453 (6)
O10.2483 (3)0.17584 (10)0.66511 (18)0.0521 (6)
H1A0.24730.19610.60180.078*
O20.1424 (4)0.09213 (11)0.53240 (18)0.0615 (7)
O30.4816 (4)0.12082 (13)1.11386 (19)0.0662 (7)
H30.55350.12311.18500.099*
O40.3880 (4)0.02582 (13)1.1812 (2)0.0745 (8)
U11U22U33U12U13U23
C10.065 (2)0.091 (3)0.046 (2)−0.003 (2)0.0142 (17)0.0128 (19)
C20.061 (2)0.075 (2)0.0364 (17)−0.0063 (17)0.0124 (15)0.0050 (16)
C30.0388 (15)0.0540 (18)0.0413 (17)−0.0042 (13)0.0037 (13)0.0110 (14)
C40.062 (2)0.060 (2)0.061 (2)0.0019 (16)0.0123 (17)0.0205 (17)
C50.068 (2)0.052 (2)0.078 (2)0.0076 (17)0.0099 (19)0.0185 (15)
C60.0388 (15)0.0420 (16)0.0348 (15)−0.0001 (12)0.0081 (12)0.0051 (12)
C70.0608 (19)0.0430 (17)0.0358 (16)−0.0047 (14)0.0110 (14)−0.0032 (13)
C80.0643 (19)0.0401 (17)0.0395 (17)−0.0050 (14)0.0130 (14)0.0029 (13)
C90.072 (2)0.0363 (16)0.0461 (18)−0.0036 (15)0.0182 (16)0.0005 (13)
C100.074 (2)0.0449 (18)0.0371 (17)−0.0070 (15)0.0158 (15)−0.0064 (13)
C110.0455 (16)0.0424 (17)0.0364 (16)−0.0014 (13)0.0090 (13)−0.0012 (13)
C120.0407 (15)0.0392 (15)0.0317 (14)0.0026 (12)0.0095 (12)0.0003 (11)
C130.0442 (16)0.0368 (15)0.0377 (15)0.0009 (12)0.0092 (12)−0.0053 (12)
C140.0488 (16)0.0508 (18)0.0285 (14)0.0109 (13)0.0091 (12)0.0004 (12)
C150.067 (2)0.0463 (18)0.0365 (16)0.0066 (15)0.0154 (15)0.0074 (13)
C160.0629 (19)0.0372 (16)0.0444 (17)−0.0057 (14)0.0156 (15)0.0032 (13)
C170.0491 (17)0.0424 (16)0.0325 (15)−0.0023 (13)0.0066 (13)−0.0017 (12)
C180.059 (2)0.067 (2)0.0395 (18)0.0141 (17)0.0113 (15)−0.0101 (17)
F10.1104 (17)0.0482 (11)0.0623 (12)−0.0268 (11)0.0179 (11)0.0032 (9)
N10.0663 (19)0.091 (2)0.0517 (18)−0.0038 (17)0.0114 (14)0.0132 (14)
N20.0574 (15)0.0436 (14)0.0347 (13)−0.0042 (11)0.0131 (11)0.0021 (11)
O10.0731 (14)0.0454 (12)0.0361 (11)−0.0108 (10)0.0129 (10)0.0004 (9)
O20.0936 (18)0.0562 (14)0.0324 (12)−0.0184 (12)0.0147 (11)−0.0025 (10)
O30.0738 (16)0.0816 (18)0.0352 (12)0.0014 (13)0.0030 (11)−0.0124 (11)
O40.101 (2)0.0853 (18)0.0302 (12)0.0180 (15)0.0084 (12)0.0083 (12)
C1—N11.301 (5)C10—H100.9300
C1—C21.368 (4)C11—O21.208 (3)
C1—H10.9300C11—O11.320 (3)
C2—C31.398 (4)C11—C121.497 (4)
C2—H20.9300C12—C131.393 (4)
C3—C41.369 (4)C12—C171.394 (4)
C3—C61.493 (4)C13—C141.392 (4)
C4—C51.451 (5)C13—H130.9300
C4—H40.9300C14—C151.376 (4)
C5—N11.308 (5)C14—C181.496 (4)
C5—H50.9300C15—C161.367 (4)
C6—C71.385 (4)C15—H150.9300
C6—C91.387 (4)C16—F11.364 (3)
C7—C81.381 (4)C16—C171.373 (4)
C7—H70.9300C17—H170.9300
C8—N21.328 (4)C18—O41.207 (4)
C8—H80.9300C18—O31.319 (4)
C9—C101.382 (4)O1—H1A0.8200
C9—H90.9300O3—H30.8200
C10—N21.330 (4)
N1—C1—C2122.4 (4)C9—C10—H10118.1
N1—C1—H1118.8O2—C11—O1124.1 (3)
C2—C1—H1118.8O2—C11—C12122.0 (3)
C1—C2—C3120.6 (4)O1—C11—C12113.9 (2)
C1—C2—H2119.7C13—C12—C17120.4 (2)
C3—C2—H2119.7C13—C12—C11122.4 (2)
C4—C3—C2117.6 (3)C17—C12—C11117.2 (2)
C4—C3—C6122.0 (3)C14—C13—C12119.7 (3)
C2—C3—C6120.3 (3)C14—C13—H13120.1
C3—C4—C5117.3 (3)C12—C13—H13120.1
C3—C4—H4121.3C15—C14—C13120.0 (3)
C5—C4—H4121.3C15—C14—C18115.9 (3)
N1—C5—C4122.3 (3)C13—C14—C18124.1 (3)
N1—C5—H5118.9C16—C15—C14118.9 (3)
C4—C5—H5118.9C16—C15—H15120.6
C7—C6—C9116.6 (2)C14—C15—H15120.6
C7—C6—C3120.1 (3)F1—C16—C15118.2 (3)
C9—C6—C3123.3 (3)F1—C16—C17118.4 (3)
C8—C7—C6119.9 (3)C15—C16—C17123.4 (3)
C8—C7—H7120.1C16—C17—C12117.5 (3)
C6—C7—H7120.1C16—C17—H17121.2
N2—C8—C7123.7 (3)C12—C17—H17121.2
N2—C8—H8118.2O4—C18—O3123.9 (3)
C7—C8—H8118.2O4—C18—C14122.9 (3)
C10—C9—C6119.5 (3)O3—C18—C14113.2 (3)
C10—C9—H9120.2C1—N1—C5119.7 (3)
C6—C9—H9120.2C8—N2—C10116.5 (2)
N2—C10—C9123.8 (3)C11—O1—H1A109.5
N2—C10—H10118.1C18—O3—H3109.5
N1—C1—C2—C3−0.3 (5)C17—C12—C13—C140.1 (4)
C1—C2—C3—C4−2.7 (5)C11—C12—C13—C14−177.2 (2)
C1—C2—C3—C6173.2 (3)C12—C13—C14—C15−0.7 (4)
C2—C3—C4—C52.7 (5)C12—C13—C14—C18176.9 (3)
C6—C3—C4—C5−173.2 (3)C13—C14—C15—C160.3 (4)
C3—C4—C5—N10.2 (5)C18—C14—C15—C16−177.6 (3)
C4—C3—C6—C7146.8 (3)C14—C15—C16—F1178.9 (3)
C2—C3—C6—C7−29.0 (4)C14—C15—C16—C170.9 (5)
C4—C3—C6—C9−30.5 (4)F1—C16—C17—C12−179.6 (3)
C2—C3—C6—C9153.8 (3)C15—C16—C17—C12−1.5 (5)
C9—C6—C7—C80.6 (4)C13—C12—C17—C161.0 (4)
C3—C6—C7—C8−176.9 (3)C11—C12—C17—C16178.4 (3)
C6—C7—C8—N20.1 (5)C15—C14—C18—O4−1.2 (4)
C7—C6—C9—C10−0.7 (4)C13—C14—C18—O4−179.0 (3)
C3—C6—C9—C10176.7 (3)C15—C14—C18—O3177.7 (3)
C6—C9—C10—N20.1 (5)C13—C14—C18—O3−0.1 (4)
O2—C11—C12—C13165.0 (3)C2—C1—N1—C53.4 (5)
O1—C11—C12—C13−14.8 (4)C4—C5—N1—C1−3.3 (5)
O2—C11—C12—C17−12.3 (4)C7—C8—N2—C10−0.7 (5)
O1—C11—C12—C17167.9 (2)C9—C10—N2—C80.6 (5)
D—H···AD—HH···AD···AD—H···A
O1—H1A···N20.821.862.684 (3)179
O3—H3···N1i0.821.882.674 (4)164
C8—H8···O20.932.423.138 (4)134
C8—H8···F1ii0.932.483.101 (4)125
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1—H1A⋯N20.821.862.684 (3)179
O3—H3⋯N1i0.821.882.674 (4)164
C8—H8⋯O20.932.423.138 (4)134
C8—H8⋯F1ii0.932.483.101 (4)125

Symmetry codes: (i) ; (ii) .

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