Literature DB >> 21522348

Butane-1,4-diaminium 2-(meth-oxy-carbon-yl)benzoate dihydrate.

Jian Li1.   

Abstract

In the title compound, C(4)H(14)N(2) (+)·2C(9)H(7)O(4) (-)·2H(2)O, the butane-1,4-diaminium cation lies on an inversion center. In the crystal, inter-molecular N-H⋯O and O-H⋯O hydrogen bonds link the components into layers parallel to (100). Addtional stabilization within these layers is provided by weak inter-molecular C-H⋯O hydrogen bonds.

Entities:  

Year:  2011        PMID: 21522348      PMCID: PMC3052138          DOI: 10.1107/S1600536811003618

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the appications of phthalimides and N-substituted phthalimides, see: Lima et al. (2002 ▶). For a related structure, see: Liang (2008 ▶).

Experimental

Crystal data

C4H14N2 2+·2C9H7O4 −·2H2O M = 484.50 Monoclinic, a = 14.0344 (15) Å b = 8.6746 (9) Å c = 10.2304 (11) Å β = 95.620 (1)° V = 1239.5 (2) Å3 Z = 2 Mo Kα radiation μ = 0.10 mm−1 T = 298 K 0.50 × 0.48 × 0.47 mm

Data collection

Bruker SMART CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 1997 ▶) T min = 0.950, T max = 0.953 6001 measured reflections 2178 independent reflections 1601 reflections with I > 2σ(I) R int = 0.037

Refinement

R[F 2 > 2σ(F 2)] = 0.043 wR(F 2) = 0.123 S = 1.07 2178 reflections 157 parameters H-atom parameters constrained Δρmax = 0.17 e Å−3 Δρmin = −0.20 e Å−3 Data collection: SMART (Bruker, 1997 ▶); cell refinement: SAINT (Bruker, 1997 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶) and PLATON (Spek, 2009 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536811003618/lh5202sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536811003618/lh5202Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C4H14N22+·2C9H7O4·2H2OF(000) = 516
Mr = 484.50Dx = 1.298 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 2198 reflections
a = 14.0344 (15) Åθ = 2.8–27.5°
b = 8.6746 (9) ŵ = 0.10 mm1
c = 10.2304 (11) ÅT = 298 K
β = 95.620 (1)°Block, colorless
V = 1239.5 (2) Å30.50 × 0.48 × 0.47 mm
Z = 2
Bruker SMART CCD diffractometer2178 independent reflections
Radiation source: fine-focus sealed tube1601 reflections with I > 2σ(I)
graphiteRint = 0.037
φ and ω scansθmax = 25.0°, θmin = 2.8°
Absorption correction: multi-scan (SADABS; Bruker, 1997)h = −12→16
Tmin = 0.950, Tmax = 0.953k = −10→10
6001 measured reflectionsl = −10→12
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.043H-atom parameters constrained
wR(F2) = 0.123w = 1/[σ2(Fo2) + (0.0556P)2 + 0.314P] where P = (Fo2 + 2Fc2)/3
S = 1.07(Δ/σ)max < 0.001
2178 reflectionsΔρmax = 0.17 e Å3
157 parametersΔρmin = −0.20 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.118 (8)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
N10.44862 (11)0.25834 (17)0.79462 (15)0.0369 (4)
H1A0.50610.25970.76470.055*
H1B0.42520.35370.79440.055*
H1C0.40940.19860.74320.055*
O10.13265 (10)0.39089 (19)0.54038 (16)0.0622 (5)
O20.28346 (10)0.43510 (19)0.61583 (16)0.0596 (5)
O30.37929 (10)0.54277 (15)0.88018 (14)0.0458 (4)
O40.35667 (9)0.74614 (15)0.74950 (14)0.0479 (4)
O50.33244 (12)0.04093 (17)0.63792 (15)0.0628 (5)
H5C0.34530.02560.55950.075*
H5D0.3382−0.04430.67900.075*
C10.19982 (14)0.4525 (2)0.62583 (19)0.0376 (5)
C20.32751 (13)0.6373 (2)0.81441 (18)0.0342 (4)
C30.15919 (12)0.5400 (2)0.73169 (18)0.0351 (5)
C40.22064 (13)0.6245 (2)0.82091 (18)0.0344 (5)
C50.18168 (15)0.7007 (2)0.9231 (2)0.0490 (6)
H50.22160.75700.98330.059*
C60.08535 (16)0.6941 (3)0.9366 (2)0.0587 (6)
H60.06080.74571.00560.070*
C70.02511 (16)0.6117 (3)0.8485 (2)0.0565 (6)
H7−0.04010.60750.85790.068*
C80.06155 (14)0.5354 (2)0.7462 (2)0.0469 (5)
H80.02060.48040.68630.056*
C90.16701 (18)0.2992 (4)0.4371 (3)0.0783 (9)
H9A0.20480.36250.38510.117*
H9B0.11350.25800.38250.117*
H9C0.20550.21610.47510.117*
C100.45726 (13)0.1967 (2)0.93045 (17)0.0337 (4)
H10A0.39550.20140.96540.040*
H10B0.50200.25920.98600.040*
C110.49175 (14)0.0324 (2)0.93138 (17)0.0353 (5)
H11A0.55100.02740.89010.042*
H11B0.4447−0.03060.88010.042*
U11U22U33U12U13U23
N10.0428 (9)0.0320 (8)0.0361 (9)0.0064 (7)0.0048 (7)0.0075 (7)
O10.0412 (8)0.0820 (12)0.0614 (11)−0.0001 (8)−0.0048 (7)−0.0318 (9)
O20.0391 (9)0.0752 (11)0.0644 (11)−0.0021 (7)0.0052 (7)−0.0322 (9)
O30.0441 (8)0.0439 (8)0.0481 (9)0.0115 (6)−0.0026 (6)0.0025 (7)
O40.0462 (9)0.0374 (8)0.0612 (10)−0.0023 (6)0.0106 (7)0.0063 (7)
O50.0936 (13)0.0428 (8)0.0488 (10)−0.0037 (8)−0.0094 (8)0.0011 (7)
C10.0365 (11)0.0357 (10)0.0398 (11)−0.0011 (8)0.0001 (8)−0.0013 (8)
C20.0391 (10)0.0279 (9)0.0351 (10)0.0004 (8)0.0008 (8)−0.0071 (8)
C30.0352 (10)0.0325 (10)0.0374 (11)0.0026 (8)0.0023 (8)0.0043 (8)
C40.0382 (10)0.0275 (9)0.0372 (11)0.0038 (8)0.0024 (8)0.0037 (8)
C50.0479 (13)0.0505 (12)0.0486 (13)0.0046 (10)0.0041 (10)−0.0111 (10)
C60.0530 (14)0.0701 (15)0.0548 (15)0.0104 (12)0.0146 (11)−0.0149 (12)
C70.0386 (12)0.0694 (15)0.0634 (15)0.0079 (11)0.0144 (10)−0.0010 (13)
C80.0378 (11)0.0493 (12)0.0530 (14)−0.0004 (9)0.0014 (9)0.0017 (10)
C90.0604 (16)0.101 (2)0.0702 (19)0.0054 (14)−0.0111 (13)−0.0481 (16)
C100.0425 (11)0.0302 (9)0.0286 (10)0.0033 (8)0.0044 (8)0.0020 (8)
C110.0457 (11)0.0307 (9)0.0295 (10)0.0041 (8)0.0035 (8)0.0007 (8)
N1—C101.483 (2)C5—C61.373 (3)
N1—H1A0.8900C5—H50.9300
N1—H1B0.8900C6—C71.374 (3)
N1—H1C0.8900C6—H60.9300
O1—C11.333 (2)C7—C81.378 (3)
O1—C91.443 (3)C7—H70.9300
O2—C11.198 (2)C8—H80.9300
O3—C21.248 (2)C9—H9A0.9600
O4—C21.246 (2)C9—H9B0.9600
O5—H5C0.8500C9—H9C0.9600
O5—H5D0.8500C10—C111.505 (2)
C1—C31.481 (3)C10—H10A0.9700
C2—C41.512 (3)C10—H10B0.9700
C3—C81.393 (3)C11—C11i1.509 (3)
C3—C41.400 (3)C11—H11A0.9700
C4—C51.393 (3)C11—H11B0.9700
C10—N1—H1A109.5C7—C6—H6119.9
C10—N1—H1B109.5C6—C7—C8119.8 (2)
H1A—N1—H1B109.5C6—C7—H7120.1
C10—N1—H1C109.5C8—C7—H7120.1
H1A—N1—H1C109.5C7—C8—C3120.6 (2)
H1B—N1—H1C109.5C7—C8—H8119.7
C1—O1—C9115.83 (17)C3—C8—H8119.7
H5C—O5—H5D108.2O1—C9—H9A109.5
O2—C1—O1121.97 (18)O1—C9—H9B109.5
O2—C1—C3125.28 (17)H9A—C9—H9B109.5
O1—C1—C3112.75 (16)O1—C9—H9C109.5
O4—C2—O3125.51 (18)H9A—C9—H9C109.5
O4—C2—C4117.28 (16)H9B—C9—H9C109.5
O3—C2—C4117.10 (16)N1—C10—C11110.12 (14)
C8—C3—C4119.66 (18)N1—C10—H10A109.6
C8—C3—C1121.09 (17)C11—C10—H10A109.6
C4—C3—C1119.22 (16)N1—C10—H10B109.6
C5—C4—C3118.40 (17)C11—C10—H10B109.6
C5—C4—C2117.51 (17)H10A—C10—H10B108.2
C3—C4—C2124.08 (16)C10—C11—C11i112.22 (19)
C6—C5—C4121.2 (2)C10—C11—H11A109.2
C6—C5—H5119.4C11i—C11—H11A109.2
C4—C5—H5119.4C10—C11—H11B109.2
C5—C6—C7120.3 (2)C11i—C11—H11B109.2
C5—C6—H6119.9H11A—C11—H11B107.9
C9—O1—C1—O21.4 (3)O3—C2—C4—C586.2 (2)
C9—O1—C1—C3−177.8 (2)O4—C2—C4—C390.4 (2)
O2—C1—C3—C8−170.6 (2)O3—C2—C4—C3−93.2 (2)
O1—C1—C3—C88.6 (3)C3—C4—C5—C6−0.2 (3)
O2—C1—C3—C47.4 (3)C2—C4—C5—C6−179.6 (2)
O1—C1—C3—C4−173.44 (17)C4—C5—C6—C7−0.1 (4)
C8—C3—C4—C50.7 (3)C5—C6—C7—C80.0 (4)
C1—C3—C4—C5−177.31 (17)C6—C7—C8—C30.5 (3)
C8—C3—C4—C2−179.96 (17)C4—C3—C8—C7−0.8 (3)
C1—C3—C4—C22.1 (3)C1—C3—C8—C7177.12 (19)
O4—C2—C4—C5−90.2 (2)N1—C10—C11—C11i176.08 (19)
D—H···AD—HH···AD···AD—H···A
N1—H1A···O4ii0.891.952.815 (2)164
N1—H1B···O30.892.002.823 (2)154
N1—H1C···O50.891.992.876 (2)172
O5—H5C···O3iii0.852.032.873 (2)172
O5—H5D···O4iv0.851.962.808 (2)172
C11—H11A···O2ii0.972.463.346 (2)151
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1A⋯O4i0.891.952.815 (2)164
N1—H1B⋯O30.892.002.823 (2)154
N1—H1C⋯O50.891.992.876 (2)172
O5—H5C⋯O3ii0.852.032.873 (2)172
O5—H5D⋯O4iii0.851.962.808 (2)172
C11—H11A⋯O2i0.972.463.346 (2)151

Symmetry codes: (i) ; (ii) ; (iii) .

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Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

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3.  Synthesis and anti-inflammatory activity of phthalimide derivatives, designed as new thalidomide analogues.

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4.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
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