Literature DB >> 21522346

1-{5-[2-Chloro-5-(trifluoro-meth-yl)phen-yl]thio-phen-2-yl}ethanone.

Roman Lytvyn, Yuri Horak, Vasyl Matiychuk, Mykola Obushak, Vasyl Kinzhybalo.   

Abstract

In the title molecule, C(13)H(8)ClF(3)OS, the dihedral angle between the mean planes of 2-chloro-5-(trifluoro-meth-yl)phenyl and tiophene rings is 54.37 (5)°. The acethyl group is twisted by 8.1 (2)° with respect to the thio-phene ring. The CF(3) group is disordered over two sets of sites with occupations of 0.49 (3) and 0.51 (3). The crystal packing features C-H⋯F and C-H⋯O hydrogen bonds, forming dimers which are connected into chains along the c axis by C-H⋯O hydrogen bonds and C-Cl⋯π [Cl⋯π = 3.415 (1) Å and C-Cl⋯π = 151.56 (5)°] inter-actions. The chains are further connected into layers perpendicular to the a axis by C-H⋯O inter-actions.

Entities:  

Year:  2011        PMID: 21522346      PMCID: PMC3052071          DOI: 10.1107/S1600536811003965

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the general synthetic procedure, see: Matiychuk et al. (2010 ▶). For the biologial activity of aryl­thio­phenes, see: Reddy et al. (2005 ▶); Anderson et al. (1963 ▶); Bohlmann et al. (1984 ▶); Michaelides et al. (1997 ▶); Tanaka et al. (1998 ▶) and for their applications, see Masui et al. (2004 ▶); Roncali (1992 ▶, 1997 ▶). For methods of obtaining aryl­thio­phenes via cross-coupling reactions, see: Stanforth (1998 ▶).

Experimental

Crystal data

C13H8ClF3OS M = 304.70 Monoclinic, a = 15.330 (6) Å b = 10.809 (4) Å c = 7.676 (3) Å β = 93.72 (3)° V = 1269.3 (8) Å3 Z = 4 Mo Kα radiation μ = 0.49 mm−1 T = 100 K 0.20 × 0.15 × 0.08 mm

Data collection

Kuma KM-4-CCD diffractometer Absorption correction: analytical (CrysAlis RED; Oxford Diffraction, 2006 ▶) T min = 0.86, T max = 0.93 16021 measured reflections 4377 independent reflections 3093 reflections with I > 2σ(I) R int = 0.034

Refinement

R[F 2 > 2σ(F 2)] = 0.039 wR(F 2) = 0.097 S = 1.00 4377 reflections 201 parameters H-atom parameters constrained Δρmax = 0.49 e Å−3 Δρmin = −0.25 e Å−3 Data collection: CrysAlis CCD (Oxford Diffraction, 2006 ▶); cell refinement: CrysAlis RED (Oxford Diffraction, 2006 ▶); data reduction: CrysAlis RED; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: DIAMOND (Brandenburg, 2006) ▶; software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536811003965/ds2088sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536811003965/ds2088Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C13H8ClF3OSF(000) = 616
Mr = 304.70Dx = 1.594 Mg m3
Monoclinic, P21/cMelting point: 347 K
Hall symbol: -P 2ybcMo Kα radiation, λ = 0.71073 Å
a = 15.330 (6) ÅCell parameters from 11592 reflections
b = 10.809 (4) Åθ = 2.3–33.9°
c = 7.676 (3) ŵ = 0.49 mm1
β = 93.72 (3)°T = 100 K
V = 1269.3 (8) Å3Block, colourless
Z = 40.20 × 0.15 × 0.08 mm
Kuma KM-4-CCD diffractometer4377 independent reflections
Radiation source: fine-focus sealed tube3093 reflections with I > 2σ(I)
graphiteRint = 0.034
ω scansθmax = 33.8°, θmin = 3.3°
Absorption correction: analytical (CrysAlis RED; Oxford Diffraction, 2006)h = −19→23
Tmin = 0.86, Tmax = 0.93k = −12→16
16021 measured reflectionsl = −11→9
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.039Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.097H-atom parameters constrained
S = 1.00w = 1/[σ2(Fo2) + (0.054P)2] where P = (Fo2 + 2Fc2)/3
4377 reflections(Δ/σ)max = 0.001
201 parametersΔρmax = 0.49 e Å3
0 restraintsΔρmin = −0.25 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
Cl10.09807 (2)0.28619 (3)1.05277 (5)0.02440 (10)
S10.37102 (2)0.42596 (3)1.04508 (5)0.01971 (9)
O10.54239 (7)0.39388 (9)1.24469 (14)0.0261 (2)
C20.42729 (9)0.29067 (12)1.08963 (19)0.0181 (3)
C210.51398 (9)0.29623 (12)1.18365 (19)0.0208 (3)
C220.56531 (10)0.17781 (14)1.1983 (2)0.0276 (3)
H22A0.58120.15211.08210.041*
H22B0.52970.11331.24850.041*
H22C0.61850.19091.27380.041*
C30.37969 (9)0.18899 (12)1.02942 (19)0.0194 (3)
H30.40000.10621.04130.023*
C40.29753 (9)0.22147 (12)0.94833 (19)0.0192 (3)
H40.25620.16300.90100.023*
C50.28396 (9)0.34750 (11)0.94559 (18)0.0160 (3)
C510.20972 (9)0.41760 (11)0.86157 (18)0.0164 (3)
C520.12277 (9)0.39514 (12)0.89694 (18)0.0179 (3)
C530.05343 (9)0.45875 (12)0.81028 (19)0.0192 (3)
H53−0.00510.44130.83570.023*
C540.07070 (9)0.54733 (12)0.68726 (19)0.0198 (3)
H540.02410.59070.62700.024*
C550.15699 (9)0.57247 (12)0.65236 (18)0.0192 (3)
C10.17567 (10)0.66394 (15)0.5124 (2)0.0289 (4)
F10.2540 (6)0.7124 (13)0.528 (2)0.049 (3)0.49 (3)
F20.1209 (7)0.7645 (7)0.5195 (13)0.0485 (17)0.49 (3)
F30.1634 (9)0.6244 (10)0.3552 (8)0.059 (2)0.49 (3)
F1A0.2471 (7)0.7292 (12)0.549 (2)0.052 (2)0.51 (3)
F2A0.1125 (5)0.7352 (16)0.465 (2)0.070 (3)0.51 (3)
F3A0.1942 (11)0.5975 (8)0.3643 (11)0.079 (2)0.51 (3)
C560.22588 (9)0.50955 (12)0.73913 (18)0.0189 (3)
H560.28430.52900.71530.023*
U11U22U33U12U13U23
Cl10.01931 (18)0.02759 (17)0.0267 (2)−0.00030 (13)0.00436 (14)0.00743 (14)
S10.01739 (17)0.01659 (14)0.0246 (2)−0.00050 (12)−0.00288 (13)0.00172 (13)
O10.0217 (5)0.0253 (5)0.0307 (6)−0.0040 (4)−0.0041 (5)0.0034 (4)
C20.0151 (6)0.0200 (6)0.0193 (7)0.0012 (5)0.0017 (5)0.0023 (5)
C210.0178 (7)0.0234 (6)0.0214 (8)−0.0002 (5)0.0024 (6)0.0072 (5)
C220.0194 (7)0.0266 (7)0.0362 (10)0.0026 (6)−0.0034 (7)0.0065 (6)
C30.0184 (7)0.0194 (6)0.0208 (7)0.0027 (5)0.0033 (6)0.0005 (5)
C40.0201 (7)0.0185 (6)0.0189 (7)−0.0012 (5)0.0009 (6)−0.0014 (5)
C50.0154 (6)0.0177 (5)0.0149 (7)−0.0002 (5)0.0009 (5)−0.0005 (5)
C510.0164 (6)0.0170 (5)0.0158 (7)0.0011 (5)0.0002 (5)−0.0031 (5)
C520.0185 (7)0.0190 (5)0.0163 (7)0.0000 (5)0.0009 (5)−0.0009 (5)
C530.0138 (6)0.0234 (6)0.0203 (7)0.0012 (5)0.0007 (5)−0.0041 (5)
C540.0182 (7)0.0217 (6)0.0190 (7)0.0028 (5)−0.0027 (6)−0.0021 (5)
C550.0200 (7)0.0200 (6)0.0174 (7)0.0005 (5)0.0005 (5)0.0003 (5)
C10.0219 (8)0.0343 (8)0.0300 (9)0.0007 (6)−0.0013 (7)0.0102 (7)
F10.015 (2)0.068 (5)0.062 (5)0.000 (3)−0.003 (2)0.043 (4)
F20.050 (3)0.038 (2)0.059 (4)0.0255 (18)0.020 (2)0.0291 (19)
F30.115 (6)0.043 (3)0.0173 (15)−0.024 (3)−0.005 (2)0.0037 (17)
F1A0.053 (5)0.049 (3)0.053 (3)−0.029 (3)−0.008 (3)0.022 (2)
F2A0.0206 (16)0.093 (6)0.099 (7)0.016 (3)0.010 (3)0.074 (5)
F3A0.160 (6)0.051 (2)0.029 (2)0.010 (4)0.037 (3)0.0148 (18)
C560.0169 (7)0.0211 (6)0.0189 (7)−0.0004 (5)0.0018 (5)−0.0017 (5)
Cl1—C521.738 (2)C51—C561.401 (2)
S1—C51.718 (2)C52—C531.398 (2)
S1—C21.721 (2)C53—C541.382 (2)
O1—C211.224 (2)C53—H530.9500
C2—C31.382 (2)C54—C551.393 (2)
C2—C211.472 (2)C54—H540.9500
C21—C221.503 (2)C55—C561.389 (2)
C22—H22A0.9800C55—C11.501 (2)
C22—H22B0.9800C1—F2A1.272 (8)
C22—H22C0.9800C1—F31.282 (8)
C3—C41.413 (2)C1—F11.309 (10)
C3—H30.9500C1—F1A1.317 (11)
C4—C51.378 (2)C1—F21.377 (7)
C4—H40.9500C1—F3A1.389 (8)
C5—C511.480 (2)C56—H560.9500
C51—C521.399 (2)
C5—S1—C291.94 (7)C53—C52—Cl1117.91 (11)
C3—C2—C21129.54 (12)C51—C52—Cl1120.28 (11)
C3—C2—S1111.25 (11)C54—C53—C52119.50 (13)
C21—C2—S1119.20 (10)C54—C53—H53120.3
O1—C21—C2120.70 (13)C52—C53—H53120.3
O1—C21—C22122.31 (14)C53—C54—C55119.52 (13)
C2—C21—C22116.98 (12)C53—C54—H54120.2
C21—C22—H22A109.5C55—C54—H54120.2
C21—C22—H22B109.5C56—C55—C54120.92 (13)
H22A—C22—H22B109.5C56—C55—C1119.42 (13)
C21—C22—H22C109.5C54—C55—C1119.58 (13)
H22A—C22—H22C109.5F3—C1—F1107.4 (8)
H22B—C22—H22C109.5F2A—C1—F1A110.1 (7)
C2—C3—C4112.70 (12)F3—C1—F2104.4 (6)
C2—C3—H3123.7F1—C1—F2103.8 (7)
C4—C3—H3123.7F2A—C1—F3A105.6 (6)
C5—C4—C3112.45 (12)F1A—C1—F3A103.8 (8)
C5—C4—H4123.8F2A—C1—C55115.3 (4)
C3—C4—H4123.8F3—C1—C55115.5 (4)
C4—C5—C51128.60 (12)F1—C1—C55114.4 (6)
C4—C5—S1111.66 (10)F1A—C1—C55113.4 (6)
C51—C5—S1119.62 (10)F2—C1—C55110.3 (4)
C52—C51—C56117.75 (12)F3A—C1—C55107.7 (4)
C52—C51—C5122.83 (12)C55—C56—C51120.46 (13)
C56—C51—C5119.41 (12)C55—C56—H56119.8
C53—C52—C51121.81 (13)C51—C56—H56119.8
D—H···AD—HH···AD···AD—H···A
C22—H22C···F1Ai0.982.553.520 (13)168
C22—H22B···O1ii0.982.623.526 (2)154
C22—H22A···O1iii0.982.673.562 (3)152
C56—H56···O1i0.952.783.697 (2)162
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C22—H22C⋯F1Ai0.982.553.520 (13)168
C22—H22B⋯O1ii0.982.623.526 (2)154
C22—H22A⋯O1iii0.982.673.562 (3)152
C56—H56⋯O1i0.952.783.697 (2)162

Symmetry codes: (i) ; (ii) ; (iii) .

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