Literature DB >> 21522334

2-Phenyl-2,3-dihydro-phenanthro[9,10-b][1,4]dioxine.

Hoong-Kun Fun, Ching Kheng Quah, Dongdong Wu, Yan Zhang.   

Abstract

In the title compound, C(22)H(16)O(2), the phenanthrene ring system is essentially planar [maximum deviation = 0.058 (1) Å] and is inclined at an angle of 58.39 (6)° to the phenyl ring. The 1,4-dioxane ring is in a chair conformation. In the crystal, mol-ecules are stacked along the b axis, but no significant hydrogen bonds are observed.

Entities:  

Year:  2011        PMID: 21522334      PMCID: PMC3051958          DOI: 10.1107/S1600536811003904

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background to and details of the biological activity of phenanthrene derivatives, see: Wang et al. (2010 ▶); Li & Wang (2009 ▶); Gao & Wong (2010 ▶); Zhan & Jiang (2010 ▶); Becker & Dettbarn (2009 ▶); Jones & Mathews (1997 ▶). For ring conformations, see: Cremer & Pople (1975 ▶). For bond-length data, see: Allen et al. (1987 ▶).

Experimental

Crystal data

C22H16O2 M = 312.35 Monoclinic, a = 12.1831 (3) Å b = 5.4674 (1) Å c = 24.6064 (7) Å β = 106.005 (2)° V = 1575.50 (7) Å3 Z = 4 Mo Kα radiation μ = 0.08 mm−1 T = 296 K 0.49 × 0.41 × 0.13 mm

Data collection

Bruker SMART APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.960, T max = 0.989 17018 measured reflections 4613 independent reflections 2927 reflections with I > 2σ(I) R int = 0.030

Refinement

R[F 2 > 2σ(F 2)] = 0.049 wR(F 2) = 0.145 S = 1.04 4613 reflections 217 parameters H-atom parameters constrained Δρmax = 0.13 e Å−3 Δρmin = −0.18 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536811003904/sj5097sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536811003904/sj5097Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C22H16O2F(000) = 656
Mr = 312.35Dx = 1.317 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 4055 reflections
a = 12.1831 (3) Åθ = 2.8–28.1°
b = 5.4674 (1) ŵ = 0.08 mm1
c = 24.6064 (7) ÅT = 296 K
β = 106.005 (2)°Plate, colourless
V = 1575.50 (7) Å30.49 × 0.41 × 0.13 mm
Z = 4
Bruker SMART APEXII CCD area-detector diffractometer4613 independent reflections
Radiation source: fine-focus sealed tube2927 reflections with I > 2σ(I)
graphiteRint = 0.030
φ and ω scansθmax = 30.1°, θmin = 2.1°
Absorption correction: multi-scan (SADABS; Bruker, 2009)h = −17→17
Tmin = 0.960, Tmax = 0.989k = −7→7
17018 measured reflectionsl = −34→34
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.049Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.145H-atom parameters constrained
S = 1.04w = 1/[σ2(Fo2) + (0.0666P)2 + 0.1135P] where P = (Fo2 + 2Fc2)/3
4613 reflections(Δ/σ)max = 0.001
217 parametersΔρmax = 0.13 e Å3
0 restraintsΔρmin = −0.18 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.69332 (7)0.38054 (17)0.93970 (4)0.0546 (2)
O20.88773 (8)0.39205 (19)0.89709 (4)0.0634 (3)
C10.70209 (14)−0.0387 (3)1.00451 (6)0.0650 (4)
H1A0.6455−0.02750.97040.078*
C20.69661 (18)−0.2210 (3)1.04270 (7)0.0778 (5)
H2A0.6366−0.33251.03400.093*
C30.77931 (18)−0.2381 (3)1.09335 (7)0.0790 (5)
H3A0.7755−0.36121.11890.095*
C40.86718 (15)−0.0739 (3)1.10617 (7)0.0779 (5)
H4A0.9232−0.08541.14050.093*
C50.87316 (13)0.1090 (3)1.06854 (6)0.0643 (4)
H5A0.93270.22151.07780.077*
C60.79093 (11)0.1262 (2)1.01686 (5)0.0502 (3)
C70.80427 (11)0.3130 (2)0.97448 (5)0.0504 (3)
H7A0.84270.45790.99440.060*
C80.87275 (12)0.2128 (3)0.93669 (6)0.0590 (3)
H8A0.94700.15980.95980.071*
H8B0.83380.07160.91640.071*
C90.79160 (10)0.5302 (2)0.87464 (5)0.0501 (3)
C100.79662 (11)0.6914 (2)0.82942 (5)0.0505 (3)
C110.89116 (12)0.6902 (3)0.80716 (6)0.0619 (4)
H11A0.95010.57900.82080.074*
C120.89711 (14)0.8519 (3)0.76553 (6)0.0706 (4)
H12A0.95960.84910.75070.085*
C130.81042 (15)1.0190 (3)0.74551 (6)0.0706 (4)
H13A0.81581.13110.71790.085*
C140.71683 (14)1.0214 (3)0.76584 (6)0.0639 (4)
H14A0.65901.13440.75160.077*
C150.70603 (11)0.8569 (2)0.80781 (5)0.0511 (3)
C160.60599 (11)0.8495 (2)0.82931 (5)0.0500 (3)
C170.51242 (13)1.0099 (3)0.81093 (6)0.0629 (4)
H17A0.51391.12830.78400.075*
C180.41948 (13)0.9955 (3)0.83177 (6)0.0669 (4)
H18A0.35931.10470.81920.080*
C190.41436 (12)0.8191 (3)0.87158 (6)0.0626 (4)
H19A0.35030.80820.88500.075*
C200.50375 (11)0.6612 (3)0.89093 (6)0.0545 (3)
H20A0.50000.54290.91750.065*
C210.60128 (10)0.6763 (2)0.87100 (5)0.0473 (3)
C220.69876 (10)0.5239 (2)0.89464 (5)0.0479 (3)
U11U22U33U12U13U23
O10.0505 (5)0.0640 (5)0.0521 (5)0.0110 (4)0.0191 (4)0.0106 (4)
O20.0592 (6)0.0747 (6)0.0649 (6)0.0212 (5)0.0314 (5)0.0178 (5)
C10.0845 (10)0.0617 (8)0.0518 (7)−0.0079 (7)0.0238 (7)−0.0085 (7)
C20.1138 (13)0.0596 (8)0.0736 (10)−0.0131 (9)0.0484 (10)−0.0079 (8)
C30.1175 (15)0.0642 (9)0.0705 (10)0.0252 (10)0.0512 (10)0.0158 (8)
C40.0789 (11)0.0925 (12)0.0645 (9)0.0307 (10)0.0234 (8)0.0236 (9)
C50.0577 (8)0.0761 (9)0.0595 (8)0.0153 (7)0.0166 (6)0.0094 (7)
C60.0571 (7)0.0507 (7)0.0471 (6)0.0110 (6)0.0216 (6)−0.0017 (5)
C70.0521 (7)0.0520 (7)0.0476 (7)0.0079 (5)0.0147 (5)0.0002 (5)
C80.0630 (8)0.0620 (8)0.0576 (8)0.0183 (6)0.0258 (6)0.0086 (7)
C90.0507 (7)0.0542 (7)0.0468 (6)0.0081 (5)0.0160 (5)−0.0011 (6)
C100.0575 (7)0.0538 (7)0.0424 (6)−0.0003 (6)0.0173 (5)−0.0052 (5)
C110.0644 (9)0.0720 (9)0.0546 (8)0.0038 (7)0.0255 (6)0.0002 (7)
C120.0743 (10)0.0852 (11)0.0600 (8)−0.0074 (8)0.0315 (7)0.0007 (8)
C130.0871 (11)0.0733 (9)0.0535 (8)−0.0100 (9)0.0229 (8)0.0090 (7)
C140.0744 (9)0.0633 (8)0.0523 (7)0.0020 (7)0.0147 (7)0.0060 (7)
C150.0603 (8)0.0519 (7)0.0394 (6)−0.0017 (6)0.0108 (5)−0.0051 (5)
C160.0543 (7)0.0515 (7)0.0410 (6)0.0038 (5)0.0078 (5)−0.0060 (5)
C170.0700 (9)0.0598 (8)0.0545 (8)0.0120 (7)0.0098 (7)0.0025 (7)
C180.0609 (9)0.0694 (9)0.0664 (9)0.0197 (7)0.0106 (7)−0.0024 (8)
C190.0508 (8)0.0738 (9)0.0620 (8)0.0089 (7)0.0136 (6)−0.0084 (7)
C200.0506 (7)0.0608 (8)0.0518 (7)0.0042 (6)0.0139 (6)−0.0028 (6)
C210.0477 (7)0.0501 (6)0.0425 (6)0.0027 (5)0.0095 (5)−0.0068 (5)
C220.0522 (7)0.0505 (6)0.0419 (6)0.0048 (5)0.0147 (5)0.0002 (5)
O1—C221.3742 (14)C10—C111.4053 (19)
O1—C71.4347 (15)C10—C151.4130 (18)
O2—C91.3749 (15)C11—C121.370 (2)
O2—C81.4285 (16)C11—H11A0.9300
C1—C61.376 (2)C12—C131.381 (2)
C1—C21.384 (2)C12—H12A0.9300
C1—H1A0.9300C13—C141.366 (2)
C2—C31.373 (3)C13—H13A0.9300
C2—H2A0.9300C14—C151.4027 (18)
C3—C41.366 (3)C14—H14A0.9300
C3—H3A0.9300C15—C161.4570 (19)
C4—C51.378 (2)C16—C211.4086 (18)
C4—H4A0.9300C16—C171.4103 (18)
C5—C61.3882 (19)C17—C181.368 (2)
C5—H5A0.9300C17—H17A0.9300
C6—C71.5002 (18)C18—C191.388 (2)
C7—C81.5128 (18)C18—H18A0.9300
C7—H7A0.9800C19—C201.3680 (18)
C8—H8A0.9700C19—H19A0.9300
C8—H8B0.9700C20—C211.4074 (18)
C9—C221.3527 (17)C20—H20A0.9300
C9—C101.4337 (17)C21—C221.4361 (17)
C22—O1—C7112.41 (9)C15—C10—C9119.32 (11)
C9—O2—C8113.33 (10)C12—C11—C10120.44 (14)
C6—C1—C2120.25 (15)C12—C11—H11A119.8
C6—C1—H1A119.9C10—C11—H11A119.8
C2—C1—H1A119.9C11—C12—C13120.06 (14)
C3—C2—C1120.32 (17)C11—C12—H12A120.0
C3—C2—H2A119.8C13—C12—H12A120.0
C1—C2—H2A119.8C14—C13—C12120.62 (14)
C4—C3—C2119.81 (15)C14—C13—H13A119.7
C4—C3—H3A120.1C12—C13—H13A119.7
C2—C3—H3A120.1C13—C14—C15121.39 (14)
C3—C4—C5120.33 (16)C13—C14—H14A119.3
C3—C4—H4A119.8C15—C14—H14A119.3
C5—C4—H4A119.8C14—C15—C10117.76 (12)
C4—C5—C6120.40 (16)C14—C15—C16122.88 (12)
C4—C5—H5A119.8C10—C15—C16119.36 (11)
C6—C5—H5A119.8C21—C16—C17117.38 (12)
C1—C6—C5118.87 (13)C21—C16—C15119.29 (11)
C1—C6—C7121.44 (12)C17—C16—C15123.32 (12)
C5—C6—C7119.58 (13)C18—C17—C16121.56 (14)
O1—C7—C6108.98 (10)C18—C17—H17A119.2
O1—C7—C8108.36 (10)C16—C17—H17A119.2
C6—C7—C8111.39 (10)C17—C18—C19120.48 (13)
O1—C7—H7A109.4C17—C18—H18A119.8
C6—C7—H7A109.4C19—C18—H18A119.8
C8—C7—H7A109.4C20—C19—C18119.84 (14)
O2—C8—C7111.52 (11)C20—C19—H19A120.1
O2—C8—H8A109.3C18—C19—H19A120.1
C7—C8—H8A109.3C19—C20—C21120.61 (13)
O2—C8—H8B109.3C19—C20—H20A119.7
C7—C8—H8B109.3C21—C20—H20A119.7
H8A—C8—H8B108.0C20—C21—C16120.07 (11)
C22—C9—O2123.01 (11)C20—C21—C22120.54 (11)
C22—C9—C10121.12 (11)C16—C21—C22119.33 (11)
O2—C9—C10115.82 (11)C9—C22—O1122.63 (11)
C11—C10—C15119.68 (12)C9—C22—C21121.26 (11)
C11—C10—C9120.98 (12)O1—C22—C21116.06 (10)
C6—C1—C2—C30.4 (2)C11—C10—C15—C14−2.33 (19)
C1—C2—C3—C40.2 (2)C9—C10—C15—C14176.42 (11)
C2—C3—C4—C50.0 (2)C11—C10—C15—C16177.24 (12)
C3—C4—C5—C6−0.9 (2)C9—C10—C15—C16−4.02 (18)
C2—C1—C6—C5−1.3 (2)C14—C15—C16—C21179.16 (12)
C2—C1—C6—C7175.03 (13)C10—C15—C16—C21−0.38 (17)
C4—C5—C6—C11.5 (2)C14—C15—C16—C17−1.50 (19)
C4—C5—C6—C7−174.83 (13)C10—C15—C16—C17178.96 (12)
C22—O1—C7—C6−171.11 (9)C21—C16—C17—C18−1.3 (2)
C22—O1—C7—C8−49.75 (14)C15—C16—C17—C18179.35 (13)
C1—C6—C7—O131.63 (16)C16—C17—C18—C19−0.7 (2)
C5—C6—C7—O1−152.09 (11)C17—C18—C19—C201.2 (2)
C1—C6—C7—C8−87.87 (15)C18—C19—C20—C210.2 (2)
C5—C6—C7—C888.41 (15)C19—C20—C21—C16−2.18 (19)
C9—O2—C8—C7−40.45 (16)C19—C20—C21—C22174.94 (12)
O1—C7—C8—O261.41 (15)C17—C16—C21—C202.68 (18)
C6—C7—C8—O2−178.73 (11)C15—C16—C21—C20−177.94 (11)
C8—O2—C9—C2210.01 (18)C17—C16—C21—C22−174.49 (11)
C8—O2—C9—C10−172.32 (11)C15—C16—C21—C224.90 (17)
C22—C9—C10—C11−177.33 (12)O2—C9—C22—O10.8 (2)
O2—C9—C10—C114.95 (18)C10—C9—C22—O1−176.74 (11)
C22—C9—C10—C153.94 (19)O2—C9—C22—C21178.22 (11)
O2—C9—C10—C15−173.77 (11)C10—C9—C22—C210.67 (19)
C15—C10—C11—C121.4 (2)C7—O1—C22—C921.05 (16)
C9—C10—C11—C12−177.34 (13)C7—O1—C22—C21−156.48 (10)
C10—C11—C12—C130.6 (2)C20—C21—C22—C9177.71 (12)
C11—C12—C13—C14−1.6 (2)C16—C21—C22—C9−5.14 (18)
C12—C13—C14—C150.6 (2)C20—C21—C22—O1−4.72 (17)
C13—C14—C15—C101.4 (2)C16—C21—C22—O1172.42 (10)
C13—C14—C15—C16−178.18 (13)
  6 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Design, synthesis, and antiviral evaluation of phenanthrene-based tylophorine derivatives as potential antiviral agents.

Authors:  Kailiang Wang; Yanna Hu; Yuxiu Liu; Na Mi; Zhijin Fan; Yu Liu; Qingmin Wang
Journal:  J Agric Food Chem       Date:  2010-11-08       Impact factor: 5.279

3.  Dissipation gradients of phenanthrene and pyrene in the Rice rhizosphere.

Authors:  Y Gao; S C Wu; X Z Yu; M H Wong
Journal:  Environ Pollut       Date:  2010-06-12       Impact factor: 8.071

4.  Interactive effect of dissolved organic matter and phenanthrene on soil enzymatic activities.

Authors:  Xinhua Zhan; Wenzhu Wu; Lixiang Zhou; Jianru Liang; Tinghui Jiang
Journal:  J Environ Sci (China)       Date:  2010       Impact factor: 5.565

5.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20

6.  Synthesis and antitumor activities of phenanthrene-based alkaloids.

Authors:  Songtao Li; Li Han; Liang Sun; Dan Zheng; Jiang Liu; Yingbo Fu; Xueshi Huang; Zhanyou Wang
Journal:  Molecules       Date:  2009-12-07       Impact factor: 4.411

  6 in total

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