Literature DB >> 21522324

N-[2-(Acetamido)-eth-yl]-2-hy-droxy-benzamide.

Michał Kozłowski1, Wanda Radecka-Paryzek, Maciej Kubicki.   

Abstract

In the title mol-ecule, C(11)H(14)N(2)O(3), an intra-molecular O-H⋯O hydrogen bond closes an almost planar [maximum deviation = 0.022 (13) Å] six-membered ring and enforces the cis conformation of the keto group with respect to the hy-droxy substituent. In the crystal, inter-molecular N-H⋯O hydrogen bonds link the moleclues into ribbons extended along [10]. Weak inter-molecular C-H⋯O inter-actions further consolidate the crystal packing.

Entities:  

Year:  2011        PMID: 21522324      PMCID: PMC3051945          DOI: 10.1107/S1600536811003680

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background to ribonucleic acid, see: Franklin (2001 ▶); Komiyama et al. (1999 ▶); Kuzuya et al. (2006 ▶); Morrow & Iranzo (2004 ▶); Nüttymäki & Lönnberg (2006 ▶). Some crystal structures of similar mol­ecules have been reported, for instance N-salicyloylglycine (Smeets et al., 1985 ▶), 2-(N-(2-(2-hy­droxy­benzamido)­ethyl­ammonio­eth­yl)amino­carbon­yl) phen­ol­ate (Liu et al., 2006 ▶) and N-(2-Amino­eth­yl)-2-hy­droxy­benzamide picrate (Yu et al., 2003 ▶). More crystal structures of analogs can be found in Cambridge Structural Database (Allen, 2002 ▶).

Experimental

Crystal data

C11H14N2O3 M = 222.24 Monoclinic, a = 8.642 (3) Å b = 4.9702 (18) Å c = 24.972 (3) Å β = 95.14 (2)° V = 1068.3 (6) Å3 Z = 4 Mo Kα radiation μ = 0.10 mm−1 T = 90 K 0.3 × 0.2 × 0.15 mm

Data collection

Oxford Diffraction Xcalibur Eos diffractometer Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2009 ▶) T min = 0.111, T max = 1.000 4347 measured reflections 2439 independent reflections 1504 reflections with I > 2σ(I) R int = 0.039

Refinement

R[F 2 > 2σ(F 2)] = 0.058 wR(F 2) = 0.162 S = 1.04 2439 reflections 158 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.29 e Å−3 Δρmin = −0.34 e Å−3 Data collection: CrysAlis PRO (Oxford Diffraction, 2009 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SIR92 (Altomare et al., 1993 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536811003680/cv5045sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536811003680/cv5045Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C11H14N2O3F(000) = 472
Mr = 222.24Dx = 1.38 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 990 reflections
a = 8.642 (3) Åθ = 3.0–29.0°
b = 4.9702 (18) ŵ = 0.10 mm1
c = 24.972 (3) ÅT = 90 K
β = 95.14 (2)°Block, yellow
V = 1068.3 (6) Å30.3 × 0.2 × 0.15 mm
Z = 4
Oxford Diffraction Xcalibur Eos diffractometer2439 independent reflections
Radiation source: Enhance (Mo) X-ray Source1504 reflections with I > 2σ(I)
graphiteRint = 0.039
Detector resolution: 16.1544 pixels mm-1θmax = 29.2°, θmin = 3.3°
ω scansh = −11→6
Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2009)k = −4→6
Tmin = 0.111, Tmax = 1.000l = −28→33
4347 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.058Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.162H atoms treated by a mixture of independent and constrained refinement
S = 1.04w = 1/[σ2(Fo2) + (0.0581P)2 + 0.0266P] where P = (Fo2 + 2Fc2)/3
2439 reflections(Δ/σ)max < 0.001
158 parametersΔρmax = 0.29 e Å3
0 restraintsΔρmin = −0.34 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.4433 (3)0.3212 (5)0.31898 (9)0.0195 (5)
O10.3176 (2)0.4713 (3)0.32788 (7)0.0273 (5)
H10.357 (4)0.597 (7)0.3630 (15)0.078 (12)*
C20.5847 (3)0.3520 (4)0.34941 (9)0.0163 (5)
C30.7073 (3)0.1857 (5)0.33760 (10)0.0211 (6)
H30.80490.20460.35790.025*
C40.6913 (3)−0.0051 (5)0.29741 (10)0.0237 (6)
H40.7763−0.11700.29040.028*
C50.5507 (3)−0.0306 (5)0.26766 (10)0.0239 (6)
H50.5385−0.16130.23980.029*
C60.4275 (3)0.1306 (5)0.27763 (10)0.0233 (6)
H60.33130.11270.25640.028*
C70.5993 (3)0.5583 (4)0.39258 (9)0.0165 (5)
O70.48629 (18)0.7039 (3)0.40218 (6)0.0215 (4)
N80.7353 (2)0.5851 (4)0.42095 (8)0.0191 (5)
H80.815 (3)0.471 (5)0.4157 (10)0.030 (8)*
C90.7594 (3)0.7863 (5)0.46326 (10)0.0204 (5)
H9A0.70910.95680.45080.024*
H9B0.87220.82090.47060.024*
C100.6929 (3)0.6963 (5)0.51550 (9)0.0214 (6)
H10A0.57820.68730.50950.026*
H10B0.73160.51360.52510.026*
N110.7358 (2)0.8778 (4)0.55967 (8)0.0212 (5)
H110.666 (3)0.991 (5)0.5708 (11)0.028 (7)*
C120.8726 (3)0.8603 (5)0.58797 (10)0.0208 (6)
O120.97079 (19)0.6959 (3)0.57683 (7)0.0249 (4)
C130.8981 (3)1.0561 (5)0.63381 (11)0.0296 (6)
H13A0.98901.00070.65750.044*
H13B0.80621.05890.65410.044*
H13C0.91571.23630.61960.044*
U11U22U33U12U13U23
C10.0211 (12)0.0222 (13)0.0154 (12)0.0028 (10)0.0029 (10)0.0010 (10)
O10.0243 (10)0.0317 (10)0.0247 (10)0.0087 (8)−0.0043 (8)−0.0064 (9)
C20.0225 (12)0.0153 (11)0.0117 (11)0.0012 (10)0.0051 (10)0.0011 (10)
C30.0221 (13)0.0245 (13)0.0172 (13)−0.0004 (10)0.0038 (10)−0.0019 (11)
C40.0285 (14)0.0230 (13)0.0213 (13)0.0025 (11)0.0110 (11)−0.0018 (11)
C50.0318 (15)0.0245 (13)0.0164 (13)−0.0070 (12)0.0081 (11)−0.0029 (11)
C60.0243 (13)0.0309 (14)0.0142 (12)−0.0034 (11)−0.0005 (10)0.0009 (11)
C70.0206 (12)0.0162 (12)0.0130 (12)0.0003 (10)0.0043 (9)0.0038 (10)
O70.0210 (9)0.0265 (9)0.0170 (9)0.0046 (7)0.0022 (7)−0.0016 (7)
N80.0200 (11)0.0226 (11)0.0148 (11)0.0031 (9)0.0014 (8)−0.0037 (9)
C90.0245 (13)0.0208 (12)0.0158 (12)−0.0018 (10)0.0015 (10)−0.0015 (11)
C100.0220 (12)0.0261 (13)0.0164 (13)−0.0029 (11)0.0024 (10)−0.0027 (11)
N110.0184 (11)0.0301 (12)0.0152 (11)0.0051 (9)0.0019 (9)−0.0060 (9)
C120.0217 (13)0.0242 (13)0.0168 (13)−0.0007 (11)0.0036 (10)0.0011 (11)
O120.0212 (9)0.0308 (10)0.0228 (10)0.0061 (8)0.0021 (7)−0.0068 (8)
C130.0240 (14)0.0373 (15)0.0262 (15)0.0070 (12)−0.0051 (11)−0.0109 (13)
C1—O11.352 (3)N8—C91.456 (3)
C1—C21.389 (3)N8—H80.91 (3)
C1—C61.399 (3)C9—C101.538 (4)
O1—H11.11 (4)C9—H9A0.9900
C2—C31.395 (3)C9—H9B0.9900
C2—C71.485 (3)C10—N111.447 (3)
C3—C41.379 (3)C10—H10A0.9900
C3—H30.9500C10—H10B0.9900
C4—C51.372 (4)N11—C121.325 (3)
C4—H40.9500N11—H110.89 (3)
C5—C61.373 (3)C12—O121.228 (3)
C5—H50.9500C12—C131.504 (3)
C6—H60.9500C13—H13A0.9800
C7—O71.255 (3)C13—H13B0.9800
C7—N81.323 (3)C13—H13C0.9800
O1—C1—C2122.0 (2)N8—C9—C10112.0 (2)
O1—C1—C6117.9 (2)N8—C9—H9A109.2
C2—C1—C6120.1 (2)C10—C9—H9A109.2
C1—O1—H1104.2 (18)N8—C9—H9B109.2
C1—C2—C3117.8 (2)C10—C9—H9B109.2
C1—C2—C7119.1 (2)H9A—C9—H9B107.9
C3—C2—C7123.1 (2)N11—C10—C9112.1 (2)
C4—C3—C2122.2 (2)N11—C10—H10A109.2
C4—C3—H3118.9C9—C10—H10A109.2
C2—C3—H3118.9N11—C10—H10B109.2
C5—C4—C3118.9 (2)C9—C10—H10B109.2
C5—C4—H4120.5H10A—C10—H10B107.9
C3—C4—H4120.5C12—N11—C10121.4 (2)
C4—C5—C6120.8 (2)C12—N11—H11118.2 (17)
C4—C5—H5119.6C10—N11—H11120.0 (18)
C6—C5—H5119.6O12—C12—N11121.6 (2)
C5—C6—C1120.2 (2)O12—C12—C13123.1 (2)
C5—C6—H6119.9N11—C12—C13115.2 (2)
C1—C6—H6119.9C12—C13—H13A109.5
O7—C7—N8120.6 (2)C12—C13—H13B109.5
O7—C7—C2121.3 (2)H13A—C13—H13B109.5
N8—C7—C2118.1 (2)C12—C13—H13C109.5
C7—N8—C9121.4 (2)H13A—C13—H13C109.5
C7—N8—H8120.5 (16)H13B—C13—H13C109.5
C9—N8—H8118.1 (17)
O1—C1—C2—C3179.3 (2)C1—C2—C7—O70.3 (3)
C6—C1—C2—C3−0.8 (3)C3—C2—C7—O7−179.8 (2)
O1—C1—C2—C7−0.8 (3)C1—C2—C7—N8−179.7 (2)
C6—C1—C2—C7179.1 (2)C3—C2—C7—N80.2 (3)
C1—C2—C3—C4−0.2 (3)O7—C7—N8—C9−1.2 (3)
C7—C2—C3—C4179.9 (2)C2—C7—N8—C9178.81 (19)
C2—C3—C4—C50.7 (4)C7—N8—C9—C1078.9 (3)
C3—C4—C5—C6−0.1 (4)N8—C9—C10—N11171.87 (19)
C4—C5—C6—C1−0.9 (4)C9—C10—N11—C12−82.2 (3)
O1—C1—C6—C5−178.7 (2)C10—N11—C12—O122.5 (4)
C2—C1—C6—C51.4 (4)C10—N11—C12—C13−177.9 (2)
D—H···AD—HH···AD···AD—H···A
O1—H1···O71.11 (4)1.51 (4)2.534 (3)150 (3)
N8—H8···O12i0.91 (3)2.02 (3)2.895 (3)160 (2)
N11—H11···O7ii0.89 (3)2.16 (3)3.040 (3)174 (2)
C3—H3···O12i0.952.473.404 (4)169.
C6—H6···O1iii0.952.473.325 (4)150.
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1—H1⋯O71.11 (4)1.51 (4)2.534 (3)150 (3)
N8—H8⋯O12i0.91 (3)2.02 (3)2.895 (3)160 (2)
N11—H11⋯O7ii0.89 (3)2.16 (3)3.040 (3)174 (2)
C3—H3⋯O12i0.952.473.404 (4)169
C6—H6⋯O1iii0.952.473.325 (4)150

Symmetry codes: (i) ; (ii) ; (iii) .

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