Literature DB >> 21522265

Dichlorido{2-(morpholin-4-yl)-N-[1-(pyridin-2-yl)ethyl-idene]ethanamine-κN,N',N''}copper(II) monohydrate.

Nura Suleiman Gwaram1, Hamid Khaledi, Hapipah Mohd Ali.   

Abstract

In the title compound, [CuCl(2)(C(13)H(19)N(3)O)]·H(2)O, the tridentate Schiff base ligand and the two Cl atoms complete a distorted square-pyramidal coordination geometry around the Cu(II) ion in which the three N atoms and one Cl atom are located in the basal plane and the other Cl atom is at the apical position. In the crystal, O-H⋯Cl hydrogen bonds link the complex mol-ecules and the uncoordinated water mol-ecules into infinite chains along the a axis. The chains are further connected into a three-dimensional network via C-H⋯O and C-H⋯Cl inter-actions.

Entities:  

Year:  2011        PMID: 21522265      PMCID: PMC3052153          DOI: 10.1107/S1600536811004892

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the structures of CuCl2 complexes with similar ligands, see: Saleh Salga et al. (2010 ▶); Wang et al. (2009 ▶). For the structure of a CdCl2 complex with the same Schiff base ligand, see: Ikmal Hisham et al. (2010 ▶). For a description of the geometry of complexes with a five-coordinate metal atom, see: Addison et al. (1984 ▶).

Experimental

Crystal data

[CuCl2(C13H19N3O)]·H2O M = 385.77 Monoclinic, a = 7.9194 (8) Å b = 8.5793 (8) Å c = 22.925 (2) Å β = 91.981 (1)° V = 1556.6 (3) Å3 Z = 4 Mo Kα radiation μ = 1.75 mm−1 T = 100 K 0.18 × 0.16 × 0.09 mm

Data collection

Bruker APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.743, T max = 0.858 9634 measured reflections 3348 independent reflections 2948 reflections with I > 2σ(I) R int = 0.023

Refinement

R[F 2 > 2σ(F 2)] = 0.025 wR(F 2) = 0.060 S = 1.05 3348 reflections 197 parameters 2 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.37 e Å−3 Δρmin = −0.34 e Å−3 Data collection: APEX2 (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: X-SEED (Barbour, 2001) ▶; software used to prepare material for publication: SHELXL97 and publCIF (Westrip, 2010 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536811004892/is2674sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536811004892/is2674Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[CuCl2(C13H19N3O)]·H2OF(000) = 796
Mr = 385.77Dx = 1.646 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 4229 reflections
a = 7.9194 (8) Åθ = 2.5–28.2°
b = 8.5793 (8) ŵ = 1.75 mm1
c = 22.925 (2) ÅT = 100 K
β = 91.981 (1)°Block, green
V = 1556.6 (3) Å30.18 × 0.16 × 0.09 mm
Z = 4
Bruker APEXII CCD diffractometer3348 independent reflections
Radiation source: fine-focus sealed tube2948 reflections with I > 2σ(I)
graphiteRint = 0.023
φ and ω scansθmax = 27.0°, θmin = 2.5°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −10→10
Tmin = 0.743, Tmax = 0.858k = −10→10
9634 measured reflectionsl = −29→28
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.025Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.060H atoms treated by a mixture of independent and constrained refinement
S = 1.05w = 1/[σ2(Fo2) + (0.0258P)2 + 0.893P] where P = (Fo2 + 2Fc2)/3
3348 reflections(Δ/σ)max = 0.001
197 parametersΔρmax = 0.37 e Å3
2 restraintsΔρmin = −0.34 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cu10.60251 (3)0.86379 (2)0.122328 (9)0.01099 (7)
Cl10.49087 (6)0.62132 (5)0.11931 (2)0.01873 (11)
Cl20.90458 (6)0.85029 (5)0.15951 (2)0.01773 (11)
O10.32231 (17)0.82636 (16)0.30317 (6)0.0183 (3)
N10.68558 (19)0.86674 (17)0.03959 (7)0.0129 (3)
N20.60269 (19)1.09006 (17)0.10733 (7)0.0119 (3)
N30.51025 (18)0.92685 (17)0.20213 (6)0.0114 (3)
C10.7350 (2)0.7448 (2)0.00826 (8)0.0159 (4)
H10.71280.64270.02210.019*
C20.8177 (2)0.7617 (2)−0.04381 (8)0.0167 (4)
H20.85130.6729−0.06530.020*
C30.8501 (2)0.9106 (2)−0.06373 (8)0.0156 (4)
H30.90770.9254−0.09900.019*
C40.7975 (2)1.0386 (2)−0.03157 (8)0.0147 (4)
H40.81681.1417−0.04490.018*
C50.7169 (2)1.0126 (2)0.01989 (8)0.0121 (4)
C60.6645 (2)1.1396 (2)0.05987 (8)0.0127 (4)
C70.6910 (2)1.3055 (2)0.04320 (8)0.0172 (4)
H7A0.63951.37370.07190.026*
H7B0.63851.32470.00450.026*
H7C0.81241.32710.04220.026*
C80.5483 (2)1.1856 (2)0.15617 (8)0.0127 (4)
H8A0.42721.21270.15100.015*
H8B0.61481.28320.15870.015*
C90.5779 (2)1.0881 (2)0.21117 (8)0.0132 (4)
H9A0.70051.08300.22100.016*
H9B0.52121.13790.24420.016*
C100.5778 (2)0.8179 (2)0.24813 (8)0.0139 (4)
H10A0.70170.83160.25220.017*
H10B0.55570.70940.23530.017*
C110.5017 (2)0.8419 (2)0.30720 (8)0.0174 (4)
H11A0.54920.76420.33520.021*
H11B0.53160.94710.32210.021*
C120.2547 (2)0.9419 (2)0.26393 (8)0.0171 (4)
H12A0.28531.04680.27890.021*
H12B0.12990.93400.26200.021*
C130.3217 (2)0.9220 (2)0.20293 (8)0.0130 (4)
H13A0.28180.82100.18670.016*
H13B0.27491.00570.17740.016*
O20.0878 (2)0.59912 (18)0.08146 (7)0.0273 (3)
H2A0.035 (3)0.659 (3)0.1032 (10)0.033*
H2B0.183 (2)0.602 (3)0.0978 (11)0.033*
U11U22U33U12U13U23
Cu10.01348 (12)0.00927 (11)0.01044 (12)0.00023 (8)0.00364 (8)0.00007 (8)
Cl10.0256 (3)0.0112 (2)0.0200 (2)−0.00334 (17)0.00966 (19)−0.00245 (17)
Cl20.0123 (2)0.0245 (2)0.0165 (2)0.00191 (17)0.00273 (17)0.00437 (18)
O10.0157 (7)0.0231 (7)0.0165 (7)−0.0002 (5)0.0050 (5)0.0047 (6)
N10.0131 (7)0.0133 (7)0.0124 (8)0.0007 (6)0.0013 (6)0.0005 (6)
N20.0124 (7)0.0112 (7)0.0120 (8)0.0006 (6)0.0008 (6)−0.0010 (6)
N30.0109 (7)0.0114 (7)0.0120 (8)−0.0005 (6)0.0013 (6)−0.0006 (6)
C10.0190 (10)0.0125 (9)0.0162 (10)0.0001 (7)0.0019 (8)−0.0010 (7)
C20.0175 (9)0.0177 (9)0.0151 (10)0.0032 (7)0.0029 (7)−0.0031 (7)
C30.0142 (9)0.0215 (10)0.0113 (9)0.0014 (7)0.0017 (7)0.0002 (7)
C40.0145 (9)0.0155 (9)0.0142 (9)0.0001 (7)0.0004 (7)0.0017 (7)
C50.0127 (9)0.0130 (8)0.0107 (9)0.0010 (7)0.0003 (7)−0.0004 (7)
C60.0108 (8)0.0141 (9)0.0130 (9)0.0002 (7)0.0003 (7)0.0008 (7)
C70.0229 (10)0.0124 (9)0.0169 (10)0.0016 (7)0.0070 (8)0.0016 (7)
C80.0150 (9)0.0109 (8)0.0124 (9)−0.0008 (7)0.0031 (7)−0.0010 (7)
C90.0145 (9)0.0126 (9)0.0126 (9)−0.0025 (7)0.0007 (7)−0.0029 (7)
C100.0127 (9)0.0155 (9)0.0134 (9)0.0024 (7)0.0007 (7)0.0033 (7)
C110.0160 (9)0.0228 (10)0.0134 (9)0.0002 (8)0.0021 (7)0.0025 (8)
C120.0152 (9)0.0194 (9)0.0171 (10)0.0013 (7)0.0056 (8)−0.0004 (8)
C130.0099 (8)0.0144 (9)0.0148 (9)−0.0005 (7)0.0009 (7)0.0000 (7)
O20.0307 (9)0.0231 (8)0.0285 (9)0.0035 (7)0.0053 (7)−0.0013 (7)
Cu1—N21.9715 (15)C5—C61.491 (2)
Cu1—N12.0290 (15)C6—C71.490 (2)
Cu1—N32.0654 (15)C7—H7A0.9800
Cu1—Cl12.2604 (5)C7—H7B0.9800
Cu1—Cl22.5143 (5)C7—H7C0.9800
O1—C111.427 (2)C8—C91.524 (2)
O1—C121.430 (2)C8—H8A0.9900
N1—C11.336 (2)C8—H8B0.9900
N1—C51.356 (2)C9—H9A0.9900
N2—C61.281 (2)C9—H9B0.9900
N2—C81.464 (2)C10—C111.515 (3)
N3—C101.494 (2)C10—H10A0.9900
N3—C131.495 (2)C10—H10B0.9900
N3—C91.495 (2)C11—H11A0.9900
C1—C21.389 (3)C11—H11B0.9900
C1—H10.9500C12—C131.522 (3)
C2—C31.383 (3)C12—H12A0.9900
C2—H20.9500C12—H12B0.9900
C3—C41.395 (3)C13—H13A0.9900
C3—H30.9500C13—H13B0.9900
C4—C51.379 (3)O2—H2A0.837 (16)
C4—H40.9500O2—H2B0.831 (16)
N2—Cu1—N179.77 (6)C6—C7—H7B109.5
N2—Cu1—N384.20 (6)H7A—C7—H7B109.5
N1—Cu1—N3163.90 (6)C6—C7—H7C109.5
N2—Cu1—Cl1154.62 (5)H7A—C7—H7C109.5
N1—Cu1—Cl197.01 (4)H7B—C7—H7C109.5
N3—Cu1—Cl196.79 (4)N2—C8—C9106.53 (14)
N2—Cu1—Cl295.63 (5)N2—C8—H8A110.4
N1—Cu1—Cl288.97 (5)C9—C8—H8A110.4
N3—Cu1—Cl294.20 (4)N2—C8—H8B110.4
Cl1—Cu1—Cl2109.544 (19)C9—C8—H8B110.4
C11—O1—C12109.02 (14)H8A—C8—H8B108.6
C1—N1—C5118.92 (16)N3—C9—C8110.42 (14)
C1—N1—Cu1127.12 (12)N3—C9—H9A109.6
C5—N1—Cu1113.06 (12)C8—C9—H9A109.6
C6—N2—C8126.51 (15)N3—C9—H9B109.6
C6—N2—Cu1118.51 (13)C8—C9—H9B109.6
C8—N2—Cu1114.57 (11)H9A—C9—H9B108.1
C10—N3—C13107.88 (14)N3—C10—C11113.72 (15)
C10—N3—C9111.29 (14)N3—C10—H10A108.8
C13—N3—C9112.19 (14)C11—C10—H10A108.8
C10—N3—Cu1109.42 (11)N3—C10—H10B108.8
C13—N3—Cu1112.81 (11)C11—C10—H10B108.8
C9—N3—Cu1103.24 (10)H10A—C10—H10B107.7
N1—C1—C2122.40 (17)O1—C11—C10110.79 (15)
N1—C1—H1118.8O1—C11—H11A109.5
C2—C1—H1118.8C10—C11—H11A109.5
C3—C2—C1118.62 (17)O1—C11—H11B109.5
C3—C2—H2120.7C10—C11—H11B109.5
C1—C2—H2120.7H11A—C11—H11B108.1
C2—C3—C4119.35 (17)O1—C12—C13111.41 (15)
C2—C3—H3120.3O1—C12—H12A109.3
C4—C3—H3120.3C13—C12—H12A109.3
C5—C4—C3118.75 (17)O1—C12—H12B109.3
C5—C4—H4120.6C13—C12—H12B109.3
C3—C4—H4120.6H12A—C12—H12B108.0
N1—C5—C4121.95 (16)N3—C13—C12112.83 (15)
N1—C5—C6114.30 (15)N3—C13—H13A109.0
C4—C5—C6123.69 (16)C12—C13—H13A109.0
N2—C6—C7126.57 (17)N3—C13—H13B109.0
N2—C6—C5113.71 (16)C12—C13—H13B109.0
C7—C6—C5119.70 (16)H13A—C13—H13B107.8
C6—C7—H7A109.5H2A—O2—H2B101 (2)
D—H···AD—HH···AD···AD—H···A
O2—H2A···Cl2i0.84 (2)2.35 (2)3.1829 (16)173 (2)
O2—H2B···Cl10.83 (2)2.48 (2)3.2841 (18)164 (2)
C2—H2···O2ii0.952.413.307 (2)156
C3—H3···Cl2iii0.952.823.619 (2)142
C4—H4···O2iv0.952.503.445 (2)172
C7—H7A···Cl1v0.982.683.6179 (19)161
C8—H8A···O1vi0.992.473.336 (2)146
C10—H10B···Cl10.992.793.4496 (19)124
C10—H10A···Cl20.992.713.3566 (19)123
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O2—H2A⋯Cl2i0.84 (2)2.35 (2)3.1829 (16)173 (2)
O2—H2B⋯Cl10.83 (2)2.48 (2)3.2841 (18)164 (2)
C2—H2⋯O2ii0.952.413.307 (2)156
C3—H3⋯Cl2iii0.952.823.619 (2)142
C4—H4⋯O2iv0.952.503.445 (2)172
C7—H7A⋯Cl1v0.982.683.6179 (19)161
C8—H8A⋯O1vi0.992.473.336 (2)146
C10—H10B⋯Cl10.992.793.4496 (19)124
C10—H10A⋯Cl20.992.713.3566 (19)123

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) ; (vi) .

  4 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Dichlorido{N-[1-(2-pyrid-yl)ethyl-idene]ethane-1,2-diamine}copper(II).

Authors:  Qiang Wang; Cai-Feng Bi; Da-Qi Wang; Yu-Hua Fan
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-03-25

3.  Dichlorido{N,N-dimethyl-N'-[1-(2-pyrid-yl)ethyl-idene]ethane-1,2-diamine-κN,N',N''}copper(II).

Authors:  Muhammad Saleh Salga; Hamid Khaledi; Hapipah Mohd Ali; Rustam Puteh
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-04-10

4.  Dichlorido{2-morpholino-N-[1-(2-pyri-dyl)ethyl-idene]ethanamine-κN,N',N''}cadmium.

Authors:  Nurulazimah Ikmal Hisham; Nura Suleiman Gwaram; Hamid Khaledi; Hapipah Mohd Ali
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-10-30
  4 in total

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