Literature DB >> 21519184

Identification of miR-23a as a novel microRNA normalizer for relative quantification in human uterine cervical tissues.

Yuanming Shen1, Yang Li, Feng Ye, Fenfen Wang, Xiaoyun Wan, Weiguo Lu, Xing Xie.   

Abstract

Quantitative real-time RT-PCR (RT-qPCR) is being widely used in microRNA expression research. However, few reports detailed a robust identification and validation strategy for suitable reference genes for normalisation in microRNA RT-qPCR studies. The aim of this study was to identify the most stable reference gene(s) for quantification of microRNA expression analysis in uterine cervical tissues. A microarray was performed on 6 pairs of uterine cervical tissues to identify the candidate reference genes. The stability of candidate reference genes was assessed by RT-qPCR in 23 pairs of uterine cervical tissues. The identified most stable reference genes were further validated in other cohort of 108 clinical uterine cervical samples: (HR-HPV- normal, n=21; HR-HPV+ normal, n=19; cervical intraepithelial neoplasia [CIN], n=47; cancer, n=21), and the effects of normalizers on the relative quantity of target miR-424 were assessed. In the array experiment, miR-26a, miR-23a, miR-200c, let-7a, and miR-1979 were identified as candidate reference genes for subsequent validation. MiR-23a was identified as the most reliable reference gene followed by miR-191. The use of miR-23a and miR-191 to normalize expression data enabled detection of a significant dereg-ulation of miR-424 between normal, CIN and cancer tissue. Our results suggested that miR-23a and miR-191 are the optimal reference microRNAs that can be used for normalization in profiling studies of cervical tissues; miR-23a is a novel microRNA normalizer.

Entities:  

Mesh:

Substances:

Year:  2011        PMID: 21519184      PMCID: PMC3128914          DOI: 10.3858/emm.2011.43.6.039

Source DB:  PubMed          Journal:  Exp Mol Med        ISSN: 1226-3613            Impact factor:   8.718


  26 in total

Review 1.  MicroRNAs: genomics, biogenesis, mechanism, and function.

Authors:  David P Bartel
Journal:  Cell       Date:  2004-01-23       Impact factor: 41.582

Review 2.  MicroRNA signatures in human cancers.

Authors:  George A Calin; Carlo M Croce
Journal:  Nat Rev Cancer       Date:  2006-11       Impact factor: 60.716

Review 3.  MicroRNA and cancer: Current status and prospective.

Authors:  Wei Wu; Miao Sun; Gang-Ming Zou; Jianjun Chen
Journal:  Int J Cancer       Date:  2007-03-01       Impact factor: 7.396

4.  Epidemiologic classification of human papillomavirus types associated with cervical cancer.

Authors:  Nubia Muñoz; F Xavier Bosch; Silvia de Sanjosé; Rolando Herrero; Xavier Castellsagué; Keerti V Shah; Peter J F Snijders; Chris J L M Meijer
Journal:  N Engl J Med       Date:  2003-02-06       Impact factor: 91.245

5.  MicroRNA expression variability in human cervical tissues.

Authors:  Patrícia M Pereira; João Paulo Marques; Ana R Soares; Laura Carreto; Manuel A S Santos
Journal:  PLoS One       Date:  2010-07-26       Impact factor: 3.240

6.  Normalization of real-time quantitative reverse transcription-PCR data: a model-based variance estimation approach to identify genes suited for normalization, applied to bladder and colon cancer data sets.

Authors:  Claus Lindbjerg Andersen; Jens Ledet Jensen; Torben Falck Ørntoft
Journal:  Cancer Res       Date:  2004-08-01       Impact factor: 12.701

Review 7.  Molecular profiling of cervical neoplasia.

Authors:  Cara M Martin; Katharine Astbury; John J O'Leary
Journal:  Expert Rev Mol Diagn       Date:  2006-03       Impact factor: 5.225

8.  MicroRNAs in human cancer: from research to therapy.

Authors:  Massimo Negrini; Manuela Ferracin; Silvia Sabbioni; Carlo M Croce
Journal:  J Cell Sci       Date:  2007-06-01       Impact factor: 5.285

Review 9.  Oncomirs - microRNAs with a role in cancer.

Authors:  Aurora Esquela-Kerscher; Frank J Slack
Journal:  Nat Rev Cancer       Date:  2006-04       Impact factor: 60.716

10.  Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes.

Authors:  Jo Vandesompele; Katleen De Preter; Filip Pattyn; Bruce Poppe; Nadine Van Roy; Anne De Paepe; Frank Speleman
Journal:  Genome Biol       Date:  2002-06-18       Impact factor: 13.583

View more
  28 in total

1.  Selection and validation of suitable reference genes for miRNA expression normalization by quantitative RT-PCR in citrus somatic embryogenic and adult tissues.

Authors:  Shu-Jun Kou; Xiao-Meng Wu; Zheng Liu; Yuan-Long Liu; Qiang Xu; Wen-Wu Guo
Journal:  Plant Cell Rep       Date:  2012-08-05       Impact factor: 4.570

2.  MicroRNA-424-5p suppresses the expression of SOCS6 in pancreatic cancer.

Authors:  Kemin Wu; Guohuang Hu; Xin He; Peng Zhou; Jian Li; Bin He; Weijia Sun
Journal:  Pathol Oncol Res       Date:  2013-05-09       Impact factor: 3.201

3.  Ratio-Based Method To Identify True Biomarkers by Normalizing Circulating ncRNA Sequencing and Quantitative PCR Data.

Authors:  Youping Deng; Yong Zhu; Hongwei Wang; Vedbar S Khadka; Ling Hu; Junmei Ai; Yuhong Dou; Yan Li; Shengming Dai; Christopher E Mason; Yunliang Wang; Wei Jia; Jicai Zhang; Gang Huang; Bin Jiang
Journal:  Anal Chem       Date:  2019-04-30       Impact factor: 6.986

Review 4.  Data Normalization Strategies for MicroRNA Quantification.

Authors:  Heidi Schwarzenbach; Andreia Machado da Silva; George Calin; Klaus Pantel
Journal:  Clin Chem       Date:  2015-09-25       Impact factor: 8.327

5.  Identification of Reference Genes for Analysis of microRNA Expression Patterns in Equine Chorioallantoic Membrane and Serum.

Authors:  Pouya Dini; Shavahn C Loux; Kirsten E Scoggin; Alejandro Esteller-Vico; Edward L Squires; Mats H T Troedsson; Peter Daels; Barry A Ball
Journal:  Mol Biotechnol       Date:  2018-01       Impact factor: 2.695

6.  Determination of reference microRNAs for relative quantification in porcine tissues.

Authors:  Oriol Timoneda; Ingrid Balcells; Sarai Córdoba; Anna Castelló; Armand Sánchez
Journal:  PLoS One       Date:  2012-09-10       Impact factor: 3.240

7.  Different normalization strategies might cause inconsistent variation in circulating microRNAs in patients with hepatocellular carcinoma.

Authors:  Gusheng Tang; Xiaojun Shen; Kaiyang Lv; Yu Wu; Jianwei Bi; Qian Shen
Journal:  Med Sci Monit       Date:  2015-02-26

8.  Reference miRNAs for miRNAome analysis of urothelial carcinomas.

Authors:  Nadine Ratert; Hellmuth-Alexander Meyer; Monika Jung; Hans-Joachim Mollenkopf; Ina Wagner; Kurt Miller; Ergin Kilic; Andreas Erbersdobler; Steffen Weikert; Klaus Jung
Journal:  PLoS One       Date:  2012-06-20       Impact factor: 3.240

9.  Identification of suitable endogenous control genes for microRNA expression profiling of childhood medulloblastoma and human neural stem cells.

Authors:  Laura A Genovesi; Denise Anderson; Kim W Carter; Keith M Giles; Peter B Dallas
Journal:  BMC Res Notes       Date:  2012-09-14

10.  A comprehensive analysis of GATA-1-regulated miRNAs reveals miR-23a to be a positive modulator of erythropoiesis.

Authors:  Yong Zhu; Dongsheng Wang; Fang Wang; Tingting Li; Lei Dong; Huiwen Liu; Yanni Ma; Fengbing Jiang; Haixin Yin; Wenting Yan; Min Luo; Zhong Tang; Guoyuan Zhang; Qiang Wang; Junwu Zhang; Jingguo Zhou; Jia Yu
Journal:  Nucleic Acids Res       Date:  2013-02-17       Impact factor: 16.971

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.