Literature DB >> 21514329

The evolution of Pyrosequencing® for microbiology: From genes to genomes.

R C Novais1, Y R Thorstenson.   

Abstract

Pyrosequencing is a unique sequencing method that was developed as an alternative to classical DNA sequencing for short- to medium-read applications. Compared to other methods, it is highly quantitative, fast and inexpensive. Additional advantages include high accuracy, flexibility and ability to automate sample preparation. This article presents a historical overview of pyrosequencing, improvements that have been made through the years and its evolution into a platform that vastly expanded the scope of genetic analysis that could be performed outside of a big sequencing center. In addition, we describe numerous applications in microbiology that have benefited from the pyrosequencing method.
Copyright © 2011 Elsevier B.V. All rights reserved.

Mesh:

Year:  2011        PMID: 21514329     DOI: 10.1016/j.mimet.2011.04.006

Source DB:  PubMed          Journal:  J Microbiol Methods        ISSN: 0167-7012            Impact factor:   2.363


  13 in total

1.  Pyrosequencing for microbial identification and characterization.

Authors:  Patrick J Cummings; Ray Ahmed; Jeffrey A Durocher; Adam Jessen; Tamar Vardi; Kristina M Obom
Journal:  J Vis Exp       Date:  2013-08-22       Impact factor: 1.355

2.  A Pyrosequencing-Based Approach to High-Throughput Identification of Influenza A(H3N2) Virus Clades Harboring Antigenic Drift Variants.

Authors:  Vasiliy P Mishin; Tatiana Baranovich; Rebecca Garten; Anton Chesnokov; Anwar I Abd Elal; Michelle Adamczyk; Jennifer LaPlante; Kirsten St George; Alicia M Fry; John Barnes; Stephanie C Chester; Xiyan Xu; Jacqueline M Katz; David E Wentworth; Larisa V Gubareva
Journal:  J Clin Microbiol       Date:  2016-12-28       Impact factor: 5.948

3.  Principal methods for isolation and identification of soil microbial communities.

Authors:  Christos Stefanis; Athanasios Alexopoulos; Chrissa Voidarou; Stavros Vavias; Eugenia Bezirtzoglou
Journal:  Folia Microbiol (Praha)       Date:  2012-07-12       Impact factor: 2.099

4.  Pyrosequencing analysis of the bacterial community in drinking water wells.

Authors:  Yendi E Navarro-Noya; Mayra C Suárez-Arriaga; Aketzally Rojas-Valdes; Nina M Montoya-Ciriaco; Selene Gómez-Acata; Fabián Fernández-Luqueño; Luc Dendooven
Journal:  Microb Ecol       Date:  2013-04-06       Impact factor: 4.552

5.  Changes in diversity, abundance, and structure of soil bacterial communities in Brazilian Savanna under different land use systems.

Authors:  Pabulo Henrique Rampelotto; Adão de Siqueira Ferreira; Anthony Diego Muller Barboza; Luiz Fernando Wurdig Roesch
Journal:  Microb Ecol       Date:  2013-04-27       Impact factor: 4.552

6.  Rapid Identification and Quantification of Aureococcus anophagefferens by qPCR Method (Taqman) in the Qinhuangdao Coastal Area: A Region for Recurrent Brown Tide Breakout in China.

Authors:  Li-Ping Wang; Kun Lei
Journal:  Indian J Microbiol       Date:  2016-09-06       Impact factor: 2.461

7.  Mining the diversity and functional profile of bacterial symbionts from the larvae of Chironomus circumdatus (bloodworms).

Authors:  Chaitali M Shaha; Mudasir A Dar; Radhakrishna S Pandit
Journal:  Folia Microbiol (Praha)       Date:  2022-06-21       Impact factor: 2.099

8.  Testing the limits of 454 pyrotag sequencing: reproducibility, quantitative assessment and comparison to T-RFLP fingerprinting of aquifer microbes.

Authors:  Giovanni Pilloni; Michael S Granitsiotis; Marion Engel; Tillmann Lueders
Journal:  PLoS One       Date:  2012-07-12       Impact factor: 3.240

9.  Identification of hepatotropic viruses from plasma using deep sequencing: a next generation diagnostic tool.

Authors:  John Law; Juan Jovel; Jordan Patterson; Glenn Ford; Sandra O'keefe; Weiwei Wang; Bo Meng; Deyong Song; Yong Zhang; Zhijian Tian; Shawn T Wasilenko; Mandana Rahbari; Troy Mitchell; Tracy Jordan; Eric Carpenter; Andrew L Mason; Gane Ka-Shu Wong
Journal:  PLoS One       Date:  2013-04-17       Impact factor: 3.240

Review 10.  A review of methods for detect human Papillomavirus infection.

Authors:  André L P Abreu; Raquel P Souza; Fabrícia Gimenes; Marcia E L Consolaro
Journal:  Virol J       Date:  2012-11-06       Impact factor: 4.099

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