Literature DB >> 21505065

A weak C' box renders U3 snoRNA levels dependent on hU3-55K binding.

Andrew Alexander Knox1, Kenneth Scott McKeegan, Charles Maurice Debieux, Adele Traynor, Hannah Richardson, Nicholas James Watkins.   

Abstract

The rate of ribosome biogenesis, which is downregulated in terminally differentiated cells and upregulated in most cancers, regulates the growth rate and is linked to the cell's proliferative potential. The U3 box C/D small nucleolar RNP (snoRNP) is an integral component of the small subunit (SSU) processome and is essential for 18S rRNA processing. We show that U3 snoRNP assembly, and therefore U3 snoRNA accumulation, is regulated through the U3-specific protein hU3-55K. Furthermore, we report that the levels of several SSU processome components, including the U3 snoRNA but not other box C/D snoRNAs, are specifically downregulated during human lung (CaCo-2) and colon (CaLu-3) epithelial cell differentiation. c-Myc is reported to play an integral role in regulating ribosome production by controlling the expression of many ribosome biogenesis factors. Our data, however, indicate that this regulation is not dependent on c-Myc since the level of this protein does not change during epithelial cell differentiation. In addition, depletion of c-Myc had only a mild affect on the levels of SSU processome proteins. CaCo-2 cells are colon adenocarcinoma epithelial cells that are believed to revert to their precancerous state during differentiation. This suggests a significant increase in the levels of specific SSU processome components during tumorogenesis.

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Year:  2011        PMID: 21505065      PMCID: PMC3133427          DOI: 10.1128/MCB.05067-11

Source DB:  PubMed          Journal:  Mol Cell Biol        ISSN: 0270-7306            Impact factor:   4.272


  45 in total

1.  A common core RNP structure shared between the small nucleoar box C/D RNPs and the spliceosomal U4 snRNP.

Authors:  N J Watkins; V Ségault; B Charpentier; S Nottrott; P Fabrizio; A Bachi; M Wilm; M Rosbash; C Branlant; R Lührmann
Journal:  Cell       Date:  2000-10-27       Impact factor: 41.582

2.  Conserved stem II of the box C/D motif is essential for nucleolar localization and is required, along with the 15.5K protein, for the hierarchical assembly of the box C/D snoRNP.

Authors:  Nicholas J Watkins; Achim Dickmanns; Reinhard Lührmann
Journal:  Mol Cell Biol       Date:  2002-12       Impact factor: 4.272

3.  Identification of protein binding sites on U3 snoRNA and pre-rRNA by UV cross-linking and high-throughput analysis of cDNAs.

Authors:  Sander Granneman; Grzegorz Kudla; Elisabeth Petfalski; David Tollervey
Journal:  Proc Natl Acad Sci U S A       Date:  2009-05-29       Impact factor: 11.205

4.  NMR metabolomic analysis of caco-2 cell differentiation.

Authors:  Insong James Lee; Kellie Hom; Guoyun Bai; Michael Shapiro
Journal:  J Proteome Res       Date:  2009-08       Impact factor: 4.466

5.  A novel small-subunit processome assembly intermediate that contains the U3 snoRNP, nucleolin, RRP5, and DBP4.

Authors:  Amy Jane Turner; Andrew Alexander Knox; José-Luis Prieto; Brian McStay; Nicholas James Watkins
Journal:  Mol Cell Biol       Date:  2009-03-30       Impact factor: 4.272

Review 6.  The post-transcriptional steps of eukaryotic ribosome biogenesis.

Authors:  A K Henras; J Soudet; M Gérus; S Lebaron; M Caizergues-Ferrer; A Mougin; Y Henry
Journal:  Cell Mol Life Sci       Date:  2008-08       Impact factor: 9.261

7.  Evidence that the AAA+ proteins TIP48 and TIP49 bridge interactions between 15.5K and the related NOP56 and NOP58 proteins during box C/D snoRNP biogenesis.

Authors:  Kenneth Scott McKeegan; Charles Maurice Debieux; Nicholas James Watkins
Journal:  Mol Cell Biol       Date:  2009-07-20       Impact factor: 4.272

8.  Yeast Rrp9p is an evolutionarily conserved U3 snoRNP protein essential for early pre-rRNA processing cleavages and requires box C for its association.

Authors:  J Venema; H R Vos; A W Faber; W J van Venrooij; H A Raué
Journal:  RNA       Date:  2000-11       Impact factor: 4.942

9.  Expression analysis with oligonucleotide microarrays reveals that MYC regulates genes involved in growth, cell cycle, signaling, and adhesion.

Authors:  H A Coller; C Grandori; P Tamayo; T Colbert; E S Lander; R N Eisenman; T R Golub
Journal:  Proc Natl Acad Sci U S A       Date:  2000-03-28       Impact factor: 11.205

10.  The Hsp90 chaperone controls the biogenesis of L7Ae RNPs through conserved machinery.

Authors:  Séverine Boulon; Nathalie Marmier-Gourrier; Bérengère Pradet-Balade; Laurence Wurth; Céline Verheggen; Beáta E Jády; Benjamin Rothé; Christina Pescia; Marie-Cécile Robert; Tamás Kiss; Barbara Bardoni; Alain Krol; Christiane Branlant; Christine Allmang; Edouard Bertrand; Bruno Charpentier
Journal:  J Cell Biol       Date:  2008-02-11       Impact factor: 10.539

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  13 in total

1.  The human box C/D snoRNA U3 is a miRNA source and miR-U3 regulates expression of sortin nexin 27.

Authors:  Nicolas Lemus-Diaz; Rafael Rinaldi Ferreira; Katherine E Bohnsack; Jens Gruber; Markus T Bohnsack
Journal:  Nucleic Acids Res       Date:  2020-08-20       Impact factor: 16.971

2.  Structural and functional analysis of the U3 snoRNA binding protein Rrp9.

Authors:  Liman Zhang; Jinzhong Lin; Keqiong Ye
Journal:  RNA       Date:  2013-03-18       Impact factor: 4.942

3.  Cyclin-dependent kinase 9 links RNA polymerase II transcription to processing of ribosomal RNA.

Authors:  Kaspar Burger; Bastian Mühl; Michaela Rohrmoser; Britta Coordes; Martin Heidemann; Markus Kellner; Anita Gruber-Eber; Vigo Heissmeyer; Katja Strässer; Dirk Eick
Journal:  J Biol Chem       Date:  2013-06-06       Impact factor: 5.157

4.  The box C/D sRNP dimeric architecture is conserved across domain Archaea.

Authors:  Kathleen R Bower-Phipps; David W Taylor; Hong-Wei Wang; Susan J Baserga
Journal:  RNA       Date:  2012-06-29       Impact factor: 4.942

5.  Both endonucleolytic and exonucleolytic cleavage mediate ITS1 removal during human ribosomal RNA processing.

Authors:  Katherine E Sloan; Sandy Mattijssen; Simon Lebaron; David Tollervey; Ger J M Pruijn; Nicholas J Watkins
Journal:  J Cell Biol       Date:  2013-02-25       Impact factor: 10.539

6.  SIRT7-dependent deacetylation of the U3-55k protein controls pre-rRNA processing.

Authors:  Sifan Chen; Maximilian Felix Blank; Aishwarya Iyer; Bingding Huang; Lin Wang; Ingrid Grummt; Renate Voit
Journal:  Nat Commun       Date:  2016-02-12       Impact factor: 14.919

7.  Implication of the box C/D snoRNP assembly factor Rsa1p in U3 snoRNP assembly.

Authors:  Benjamin Rothé; Xavier Manival; Nicolas Rolland; Christophe Charron; Véronique Senty-Ségault; Christiane Branlant; Bruno Charpentier
Journal:  Nucleic Acids Res       Date:  2017-07-07       Impact factor: 16.971

8.  Interactions and activities of factors involved in the late stages of human 18S rRNA maturation.

Authors:  Katherine Elizabeth Sloan; Andrew Alexander Knox; Graeme Raymond Wells; Claudia Schneider; Nicholas James Watkins
Journal:  RNA Biol       Date:  2019-01-13       Impact factor: 4.652

Review 9.  Emerging Data on the Diversity of Molecular Mechanisms Involving C/D snoRNAs.

Authors:  Laeya Baldini; Bruno Charpentier; Stéphane Labialle
Journal:  Noncoding RNA       Date:  2021-05-06

10.  The roles of SSU processome components and surveillance factors in the initial processing of human ribosomal RNA.

Authors:  Katherine E Sloan; Markus T Bohnsack; Claudia Schneider; Nicholas J Watkins
Journal:  RNA       Date:  2014-02-18       Impact factor: 4.942

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