Literature DB >> 21502537

Structural analysis of human Orc6 protein reveals a homology with transcription factor TFIIB.

Shixuan Liu1, Maxim Balasov, Hongfei Wang, Lijie Wu, Igor N Chesnokov, Yingfang Liu.   

Abstract

The Origin Recognition Complex (ORC) is a six-subunit protein important for the initiation of DNA replication in eukaryotic cells. Orc6 is the smallest and the least conserved among ORC subunits. It is required for the DNA replication but also has a function in cytokinesis in metazoan species, however, the mechanisms of Orc6 action in these processes are not clear. Here we report a structure of the middle domain of human Orc6. This domain has an overall fold similar to the corresponding helical domain of transcription factor TFIIB. Based on these findings, a model of Orc6 binding to DNA is produced. We have identified amino acids of Orc6 which are directly involved in DNA binding. Alterations of these amino acids abolish DNA binding ability of Orc6 and also result in reduced levels of DNA replication in vitro and in cultured cells. Our data indicate that Orc6 is one of the DNA binding subunits of ORC in metazoan species. We propose that Orc6 may participate in positioning of ORC at the origins of DNA replication similar to the role of TFIIB in positioning transcription preinitiation complex at the promoter.

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Year:  2011        PMID: 21502537      PMCID: PMC3088625          DOI: 10.1073/pnas.1013676108

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  43 in total

1.  Orc6 involved in DNA replication, chromosome segregation, and cytokinesis.

Authors:  Supriya G Prasanth; Kannanganattu V Prasanth; Bruce Stillman
Journal:  Science       Date:  2002-08-09       Impact factor: 47.728

2.  DNA topology, not DNA sequence, is a critical determinant for Drosophila ORC-DNA binding.

Authors:  Dirk Remus; Eileen L Beall; Michael R Botchan
Journal:  EMBO J       Date:  2004-02-05       Impact factor: 11.598

3.  Substructure solution with SHELXD.

Authors:  Thomas R Schneider; George M Sheldrick
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2002-09-28

4.  Role for a Drosophila Myb-containing protein complex in site-specific DNA replication.

Authors:  Eileen L Beall; J Robert Manak; Sharleen Zhou; Maren Bell; Joseph S Lipsick; Michael R Botchan
Journal:  Nature       Date:  2002 Dec 19-26       Impact factor: 49.962

Review 5.  Cell cycle dependent regulation of the origin recognition complex.

Authors:  Melvin L DePamphilis
Journal:  Cell Cycle       Date:  2005-01-29       Impact factor: 4.534

Review 6.  TFIIB and the regulation of transcription by RNA polymerase II.

Authors:  Wensheng Deng; Stefan G E Roberts
Journal:  Chromosoma       Date:  2007-06-26       Impact factor: 4.316

7.  A WD-repeat protein stabilizes ORC binding to chromatin.

Authors:  Zhen Shen; Kizhakke M Sathyan; Yijie Geng; Ruiping Zheng; Arindam Chakraborty; Brian Freeman; Fei Wang; Kannanganattu V Prasanth; Supriya G Prasanth
Journal:  Mol Cell       Date:  2010-10-08       Impact factor: 17.970

8.  A cytokinetic function of Drosophila ORC6 protein resides in a domain distinct from its replication activity.

Authors:  Igor N Chesnokov; Olga N Chesnokova; Michael Botchan
Journal:  Proc Natl Acad Sci U S A       Date:  2003-07-23       Impact factor: 11.205

9.  Crystal structure of a TFIIB-TBP-TATA-element ternary complex.

Authors:  D B Nikolov; H Chen; E D Halay; A A Usheva; K Hisatake; D K Lee; R G Roeder; S K Burley
Journal:  Nature       Date:  1995-09-14       Impact factor: 49.962

10.  Reconstitution of licensed replication origins on Xenopus sperm nuclei using purified proteins.

Authors:  P J Gillespie; A Li; J J Blow
Journal:  BMC Biochem       Date:  2001-12-05       Impact factor: 4.059

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  30 in total

1.  Epstein-Barr nuclear antigen 1 (EBNA1)-dependent recruitment of origin recognition complex (Orc) on oriP of Epstein-Barr virus with purified proteins: stimulation by Cdc6 through its direct interaction with EBNA1.

Authors:  Kenji Moriyama; Naoko Yoshizawa-Sugata; Chikashi Obuse; Toshiki Tsurimoto; Hisao Masai
Journal:  J Biol Chem       Date:  2012-05-14       Impact factor: 5.157

2.  Prereplication-complex formation: a molecular double take?

Authors:  Hasan Yardimci; Johannes C Walter
Journal:  Nat Struct Mol Biol       Date:  2014-01       Impact factor: 15.369

Review 3.  Archaeology of eukaryotic DNA replication.

Authors:  Kira S Makarova; Eugene V Koonin
Journal:  Cold Spring Harb Perspect Biol       Date:  2013-11-01       Impact factor: 10.005

Review 4.  Mechanisms and regulation of DNA replication initiation in eukaryotes.

Authors:  Matthew W Parker; Michael R Botchan; James M Berger
Journal:  Crit Rev Biochem Mol Biol       Date:  2017-01-17       Impact factor: 8.250

Review 5.  Helicase loading at chromosomal origins of replication.

Authors:  Stephen P Bell; Jon M Kaguni
Journal:  Cold Spring Harb Perspect Biol       Date:  2013-06-01       Impact factor: 10.005

6.  The interaction networks of the budding yeast and human DNA replication-initiation proteins.

Authors:  Rentian Wu; Aftab Amin; Ziyi Wang; Yining Huang; Marco Man-Hei Cheung; Zhiling Yu; Wei Yang; Chun Liang
Journal:  Cell Cycle       Date:  2019-03-19       Impact factor: 4.534

7.  A new class of disordered elements controls DNA replication through initiator self-assembly.

Authors:  Matthew W Parker; Maren Bell; Mustafa Mir; Jonchee A Kao; Xavier Darzacq; Michael R Botchan; James M Berger
Journal:  Elife       Date:  2019-09-27       Impact factor: 8.140

8.  Human origin recognition complex binds preferentially to G-quadruplex-preferable RNA and single-stranded DNA.

Authors:  Shoko Hoshina; Kei Yura; Honami Teranishi; Noriko Kiyasu; Ayumi Tominaga; Haruka Kadoma; Ayaka Nakatsuka; Tomoko Kunichika; Chikashi Obuse; Shou Waga
Journal:  J Biol Chem       Date:  2013-09-03       Impact factor: 5.157

9.  Differential analysis of gene regulation at transcript resolution with RNA-seq.

Authors:  Cole Trapnell; David G Hendrickson; Martin Sauvageau; Loyal Goff; John L Rinn; Lior Pachter
Journal:  Nat Biotechnol       Date:  2012-12-09       Impact factor: 54.908

Review 10.  The origin recognition complex: a biochemical and structural view.

Authors:  Huilin Li; Bruce Stillman
Journal:  Subcell Biochem       Date:  2012
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