Literature DB >> 21502536

Emergence of long timescales and stereotyped behaviors in Caenorhabditis elegans.

Greg J Stephens1, Matthew Bueno de Mesquita, William S Ryu, William Bialek.   

Abstract

Animal behaviors often are decomposable into discrete, stereotyped elements, well separated in time. In one model, such behaviors are triggered by specific commands; in the extreme case, the discreteness of behavior is traced to the discreteness of action potentials in the individual command neurons. Here, we use the crawling behavior of the nematode Caenorhabditis elegans to demonstrate the opposite view, in which discreteness, stereotypy, and long timescales emerge from the collective dynamics of the behavior itself. In previous work, we found that as C. elegans crawls, its body moves through a "shape space" in which four dimensions capture approximately 95% of the variance in body shape. Here we show that stochastic dynamics within this shape space predicts transitions between attractors corresponding to abrupt reversals in crawling direction. With no free parameters, our inferred stochastic dynamical system generates reversal timescales and stereotyped trajectories in close agreement with experimental observations. We use the stochastic dynamics to show that the noise amplitude decreases systematically with increasing time away from food, resulting in longer bouts of forward crawling and suggesting that worms can use noise to modify their locomotory behavior.

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Year:  2011        PMID: 21502536      PMCID: PMC3088607          DOI: 10.1073/pnas.1007868108

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  20 in total

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Journal:  Nat Neurosci       Date:  2002-11       Impact factor: 24.884

2.  Patterns of human interlimb coordination emerge from the properties of non-linear, limit cycle oscillatory processes: theory and data.

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3.  A circuit for navigation in Caenorhabditis elegans.

Authors:  Jesse M Gray; Joseph J Hill; Cornelia I Bargmann
Journal:  Proc Natl Acad Sci U S A       Date:  2005-02-02       Impact factor: 11.205

Review 4.  The Mauthner cell half a century later: a neurobiological model for decision-making?

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5.  Distilling free-form natural laws from experimental data.

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Journal:  Science       Date:  2009-04-03       Impact factor: 47.728

6.  Durations and frequencies of free locomotion in wild type and GABAergic mutants of Caenorhabditis elegans.

Authors:  R Shingai
Journal:  Neurosci Res       Date:  2000-09       Impact factor: 3.304

7.  Signal-dependent noise determines motor planning.

Authors:  C M Harris; D M Wolpert
Journal:  Nature       Date:  1998-08-20       Impact factor: 49.962

8.  The neural circuit for touch sensitivity in Caenorhabditis elegans.

Authors:  M Chalfie; J E Sulston; J G White; E Southgate; J N Thomson; S Brenner
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9.  C. elegans locomotory rate is modulated by the environment through a dopaminergic pathway and by experience through a serotonergic pathway.

Authors:  E R Sawin; R Ranganathan; H R Horvitz
Journal:  Neuron       Date:  2000-06       Impact factor: 17.173

10.  From modes to movement in the behavior of Caenorhabditis elegans.

Authors:  Greg J Stephens; Bethany Johnson-Kerner; William Bialek; William S Ryu
Journal:  PLoS One       Date:  2010-11-16       Impact factor: 3.240

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  35 in total

1.  Unsupervised learning of control signals and their encodings in Caenorhabditis elegans whole-brain recordings.

Authors:  Charles Fieseler; Manuel Zimmer; J Nathan Kutz
Journal:  J R Soc Interface       Date:  2020-12-09       Impact factor: 4.118

2.  Undulatory locomotion of Caenorhabditis elegans on wet surfaces.

Authors:  X N Shen; J Sznitman; P Krajacic; T Lamitina; P E Arratia
Journal:  Biophys J       Date:  2012-06-19       Impact factor: 4.033

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Journal:  Proc Natl Acad Sci U S A       Date:  2020-06-15       Impact factor: 11.205

4.  Whole-animal connectomes of both Caenorhabditis elegans sexes.

Authors:  Steven J Cook; Travis A Jarrell; Christopher A Brittin; Yi Wang; Adam E Bloniarz; Maksim A Yakovlev; Ken C Q Nguyen; Leo T-H Tang; Emily A Bayer; Janet S Duerr; Hannes E Bülow; Oliver Hobert; David H Hall; Scott W Emmons
Journal:  Nature       Date:  2019-07-03       Impact factor: 49.962

Review 5.  Neural Circuitry That Mediates Behavior Governing the Tradeoffs Between Survival and Reproduction in Caenorhabditis elegans.

Authors:  Scott W Emmons
Journal:  Integr Comp Biol       Date:  2017-12-01       Impact factor: 3.326

6.  Roll maneuvers are essential for active reorientation of Caenorhabditis elegans in 3D media.

Authors:  Alejandro Bilbao; Amar K Patel; Mizanur Rahman; Siva A Vanapalli; Jerzy Blawzdziewicz
Journal:  Proc Natl Acad Sci U S A       Date:  2018-04-04       Impact factor: 11.205

7.  A stochastic neuronal model predicts random search behaviors at multiple spatial scales in C. elegans.

Authors:  Steven B Augustine; Kristy J Lawton; Theodore H Lindsay; Tod R Thiele; William M Roberts; Eduardo J Izquierdo; Serge Faumont; Rebecca A Lindsay; Matthew Cale Britton; Navin Pokala; Cornelia I Bargmann; Shawn R Lockery
Journal:  Elife       Date:  2016-01-29       Impact factor: 8.140

8.  Tracking changes in behavioural dynamics using prediction error.

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Journal:  PLoS One       Date:  2021-05-12       Impact factor: 3.240

9.  Collective states, multistability and transitional behavior in schooling fish.

Authors:  Kolbjørn Tunstrøm; Yael Katz; Christos C Ioannou; Cristián Huepe; Matthew J Lutz; Iain D Couzin
Journal:  PLoS Comput Biol       Date:  2013-02-28       Impact factor: 4.475

10.  Discriminating external and internal causes for heading changes in freely flying Drosophila.

Authors:  Andrea Censi; Andrew D Straw; Rosalyn W Sayaman; Richard M Murray; Michael H Dickinson
Journal:  PLoS Comput Biol       Date:  2013-02-28       Impact factor: 4.475

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