Literature DB >> 21496932

Absence reduction in entomological surveillance data to improve niche-based distribution models for Culicoides imicola.

J Peters1, B De Baets, J Van Doninck, C Calvete, J Lucientes, E M De Clercq, E Ducheyne, N E C Verhoest.   

Abstract

Data-driven models for the prediction of bluetongue vector distributions are valuable tools for the identification of areas at risk for bluetongue outbreaks. Various models have been developed during the last decade, and the majority of them use linear discriminant analysis or logistic regression to infer vector-environment relationships. This study presents a performance assessment of two established models compared to a distribution model based on a promising ensemble learning technique called Random Forests. Additionally, the impact of false absences, i.e. data records of suitable vector habitat that are, for various reasons, incorrectly labelled as absent, on the model outcome was assessed using alternative calibration-validation schemes. Three reduction methods were applied to reduce the number of false absences in the calibration data, without loss of information on the environmental gradient of suitable vector habitat: random reduction and stratified reduction based on the distance between absence and presence records in geographical (Euclidean distance) or environmental space (Mahalanobis distance). The results indicated that the predicted vector distribution by the Random Forest model was significantly more accurate than the vector distributions predicted by the two established models (McNemar test, p<0.01) when the calibration data were not reduced with respect to false absences. The performance of the established models, however, increased considerably by application of stratified false absence reductions. Model validation revealed no significant difference between the performance of the three distinct Culicoides imicola distribution models for the majority of alternative stratified reduction schemes. The main conclusion of this study is that the application of Random Forests, or linear discriminant analysis and logistic regression on the condition that calibration data were first reduced on geographical or environmental information, potentially lead toward better vector distribution models.
Copyright © 2011 Elsevier B.V. All rights reserved.

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Year:  2011        PMID: 21496932     DOI: 10.1016/j.prevetmed.2011.03.004

Source DB:  PubMed          Journal:  Prev Vet Med        ISSN: 0167-5877            Impact factor:   2.670


  10 in total

1.  Predicting ectotherm disease vector spread--benefits from multidisciplinary approaches and directions forward.

Authors:  Stephanie Margarete Thomas; Carl Beierkuhnlein
Journal:  Naturwissenschaften       Date:  2013-03-27

2.  Thermal limits of two biting midges, Culicoides imicola Kieffer and C. bolitinos Meiswinkel (Diptera: Ceratopogonidae).

Authors:  F Arné Verhoef; Gert J Venter; Christopher W Weldon
Journal:  Parasit Vectors       Date:  2014-08-20       Impact factor: 3.876

3.  Spatial distribution modelling of Culicoides (Diptera: Ceratopogonidae) biting midges, potential vectors of African horse sickness and bluetongue viruses in Senegal.

Authors:  Maryam Diarra; Moussa Fall; Assane Gueye Fall; Aliou Diop; Renaud Lancelot; Momar Talla Seck; Ignace Rakotoarivony; Xavier Allène; Jérémy Bouyer; Hélène Guis
Journal:  Parasit Vectors       Date:  2018-06-08       Impact factor: 3.876

4.  Monthly variation in the probability of presence of adult Culicoides populations in nine European countries and the implications for targeted surveillance.

Authors:  Ana Carolina Cuéllar; Lene Jung Kjær; Andreas Baum; Anders Stockmarr; Henrik Skovgard; Søren Achim Nielsen; Mats Gunnar Andersson; Anders Lindström; Jan Chirico; Renke Lühken; Sonja Steinke; Ellen Kiel; Jörn Gethmann; Franz J Conraths; Magdalena Larska; Marcin Smreczak; Anna Orłowska; Inger Hamnes; Ståle Sviland; Petter Hopp; Katharina Brugger; Franz Rubel; Thomas Balenghien; Claire Garros; Ignace Rakotoarivony; Xavier Allène; Jonathan Lhoir; David Chavernac; Jean-Claude Delécolle; Bruno Mathieu; Delphine Delécolle; Marie-Laure Setier-Rio; Roger Venail; Bethsabée Scheid; Miguel Ángel Miranda Chueca; Carlos Barceló; Javier Lucientes; Rosa Estrada; Alexander Mathis; Wesley Tack; René Bødker
Journal:  Parasit Vectors       Date:  2018-11-29       Impact factor: 3.876

5.  Predicting and mapping human risk of exposure to Ixodes ricinus nymphs using climatic and environmental data, Denmark, Norway and Sweden, 2016.

Authors:  Lene Jung Kjær; Arnulf Soleng; Kristin Skarsfjord Edgar; Heidi Elisabeth H Lindstedt; Katrine Mørk Paulsen; Åshild Kristine Andreassen; Lars Korslund; Vivian Kjelland; Audun Slettan; Snorre Stuen; Petter Kjellander; Madeleine Christensson; Malin Teräväinen; Andreas Baum; Kirstine Klitgaard; René Bødker
Journal:  Euro Surveill       Date:  2019-02

6.  Assessing the Risk of Occurrence of Bluetongue in Senegal.

Authors:  Marie Cicille Ba Gahn; Fallou Niakh; Mamadou Ciss; Ismaila Seck; Modou Moustapha Lo; Assane Gueye Fall; Biram Biteye; Moussa Fall; Mbengué Ndiaye; Aminata Ba; Momar Talla Seck; Baba Sall; Mbargou Lo; Coumba Faye; Cécile Squarzoni-Diaw; Alioune Ka; Yves Amevoin; Andrea Apolloni
Journal:  Microorganisms       Date:  2020-11-11

7.  Identifying Spanish Areas at More Risk of Monthly BTV Transmission with a Basic Reproduction Number Approach.

Authors:  Cecilia Aguilar-Vega; Jaime Bosch; Eduardo Fernández-Carrión; Javier Lucientes; José Manuel Sánchez-Vizcaíno
Journal:  Viruses       Date:  2020-10-13       Impact factor: 5.048

8.  Characterizing the species composition of European Culicoides vectors by means of the Köppen-Geiger climate classification.

Authors:  Katharina Brugger; Franz Rubel
Journal:  Parasit Vectors       Date:  2013-11-22       Impact factor: 3.876

9.  Ecological Niche Modelling Predicts Southward Expansion of Lutzomyia (Nyssomyia) flaviscutellata (Diptera: Psychodidae: Phlebotominae), Vector of Leishmania (Leishmania) amazonensis in South America, under Climate Change.

Authors:  Bruno M Carvalho; Elizabeth F Rangel; Paul D Ready; Mariana M Vale
Journal:  PLoS One       Date:  2015-11-30       Impact factor: 3.240

10.  Modelling the monthly abundance of Culicoides biting midges in nine European countries using Random Forests machine learning.

Authors:  Ana Carolina Cuéllar; Lene Jung Kjær; Andreas Baum; Anders Stockmarr; Henrik Skovgard; Søren Achim Nielsen; Mats Gunnar Andersson; Anders Lindström; Jan Chirico; Renke Lühken; Sonja Steinke; Ellen Kiel; Jörn Gethmann; Franz J Conraths; Magdalena Larska; Marcin Smreczak; Anna Orłowska; Inger Hamnes; Ståle Sviland; Petter Hopp; Katharina Brugger; Franz Rubel; Thomas Balenghien; Claire Garros; Ignace Rakotoarivony; Xavier Allène; Jonathan Lhoir; David Chavernac; Jean-Claude Delécolle; Bruno Mathieu; Delphine Delécolle; Marie-Laure Setier-Rio; Bethsabée Scheid; Miguel Ángel Miranda Chueca; Carlos Barceló; Javier Lucientes; Rosa Estrada; Alexander Mathis; Roger Venail; Wesley Tack; Rene Bødker
Journal:  Parasit Vectors       Date:  2020-04-15       Impact factor: 3.876

  10 in total

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