Literature DB >> 21490423

Multi-element fingerprinting and high throughput sequencing identify multiple elements that affect fungal communities in Quercus macrocarpa foliage.

Ari Jumpponen1, Karen Keating, Gary Gadbury, Kenneth L Jones, J David Mattox.   

Abstract

Diverse fungal mutualists, pathogens and saprobes colonize plant leaves. These fungi face a complex environment, in which stochastic dispersal interplays with abiotic and biotic filters. However, identification of the specific factors that drive the community assembly seems unattainable. We mined two broad data sets and identified chemical elements, to which dominant molecular operational taxonomic units (OTUs) in the foliage of a native tree respond most extremely. While many associations could be identified, potential complicating issues emerged. Those were related to unevenly distributed OTU frequency data, a large number of potentially explanatory variables, and the disproportionate effects of outlier observations.

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Year:  2010        PMID: 21490423      PMCID: PMC3115093          DOI: 10.4161/psb.5.9.12681

Source DB:  PubMed          Journal:  Plant Signal Behav        ISSN: 1559-2316


  11 in total

1.  A greedy algorithm for aligning DNA sequences.

Authors:  Z Zhang; S Schwartz; L Wagner; W Miller
Journal:  J Comput Biol       Date:  2000 Feb-Apr       Impact factor: 1.479

2.  Diversity and host preference of leaf endophytic fungi in the Iwokrama Forest Reserve, Guyana.

Authors:  Paul F Cannon; Coralie M Simmons
Journal:  Mycologia       Date:  2002 Mar-Apr       Impact factor: 2.696

Review 3.  Microbial biogeography: putting microorganisms on the map.

Authors:  Jennifer B Hughes Martiny; Brendan J M Bohannan; James H Brown; Robert K Colwell; Jed A Fuhrman; Jessica L Green; M Claire Horner-Devine; Matthew Kane; Jennifer Adams Krumins; Cheryl R Kuske; Peter J Morin; Shahid Naeem; Lise Ovreås; Anna-Louise Reysenbach; Val H Smith; James T Staley
Journal:  Nat Rev Microbiol       Date:  2006-02       Impact factor: 60.633

4.  Fragmented environment affects birch leaf endophytes.

Authors:  M Helander; J Ahlholm; T N Sieber; S Hinneri; K Saikkonen
Journal:  New Phytol       Date:  2007       Impact factor: 10.151

5.  Diversity and host range of foliar fungal endophytes: are tropical leaves biodiversity hotspots?

Authors:  A Elizabeth Arnold; F Lutzoni
Journal:  Ecology       Date:  2007-03       Impact factor: 5.499

6.  Canopy cover and leaf age affect colonization by tropical fungal endophytes: Ecological pattern and process in Theobroma cacao (Malvaceae).

Authors:  A Elizabeth Arnold; Edward Allen Herre
Journal:  Mycologia       Date:  2003 May-Jun       Impact factor: 2.696

7.  Fungal-fungal associations affect the assembly of endophyte communities in maize (Zea mays).

Authors:  Jean J Pan; Georgiana May
Journal:  Microb Ecol       Date:  2009-06-12       Impact factor: 4.552

8.  Impact of agricultural practices on the Zea mays L. endophytic community.

Authors:  Dave Seghers; Lieven Wittebolle; Eva M Top; Willy Verstraete; Steven D Siciliano
Journal:  Appl Environ Microbiol       Date:  2004-03       Impact factor: 4.792

9.  Fungal endophytes limit pathogen damage in a tropical tree.

Authors:  A Elizabeth Arnold; Luis Carlos Mejía; Damond Kyllo; Enith I Rojas; Zuleyka Maynard; Nancy Robbins; Edward Allen Herre
Journal:  Proc Natl Acad Sci U S A       Date:  2003-12-11       Impact factor: 11.205

10.  Endophytic fungi from leaves of Centella asiatica: occurrence and potential interactions within leaves.

Authors:  E F Rakotoniriana; F Munaut; C Decock; D Randriamampionona; M Andriambololoniaina; T Rakotomalala; E J Rakotonirina; C Rabemanantsoa; K Cheuk; S U Ratsimamanga; J Mahillon; M El-Jaziri; J Quetin-Leclercq; A M Corbisier
Journal:  Antonie Van Leeuwenhoek       Date:  2007-07-04       Impact factor: 2.271

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  1 in total

1.  Comparison of root-associated communities of native and non-native ectomycorrhizal hosts in an urban landscape.

Authors:  K Lothamer; S P Brown; J D Mattox; A Jumpponen
Journal:  Mycorrhiza       Date:  2013-11-13       Impact factor: 3.387

  1 in total

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