Literature DB >> 21488852

Correcting away the hidden heritability.

Scott M Williams1, Jonathan L Haines.   

Abstract

In the age of high-density genome-wide association (GWAS) data, correcting for multiple comparisons is a substantial issue for genetic epidemiological studies. However, the current manuscript review process generally requires both stringent correction and independent replication. The result of this stringency is that studies that are published suffer from inflated Type 2 error rates (false negatives), thereby removing many likely real signals from follow-up. Elimination of these alleles, if they are truly associated, from further study will slow research progress in studies of complex disease. We argue that this method of correction is overly conservative, especially in an age when high-density follow-up experiments are possible and reasonably inexpensive.
© 2011 The Authors Annals of Human Genetics © 2011 Blackwell Publishing Ltd/University College London.

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Year:  2011        PMID: 21488852     DOI: 10.1111/j.1469-1809.2011.00640.x

Source DB:  PubMed          Journal:  Ann Hum Genet        ISSN: 0003-4800            Impact factor:   1.670


  41 in total

1.  Addressing population-specific multiple testing burdens in genetic association studies.

Authors:  Rafal S Sobota; Daniel Shriner; Nuri Kodaman; Robert Goodloe; Wei Zheng; Yu-Tang Gao; Todd L Edwards; Christopher I Amos; Scott M Williams
Journal:  Ann Hum Genet       Date:  2015-01-22       Impact factor: 1.670

2.  TFF2-CXCR4 Axis Is Associated with BRAF V600E Colon Cancer.

Authors:  Manish K Gala; Thomas Austin; Shuji Ogino; Andrew T Chan
Journal:  Cancer Prev Res (Phila)       Date:  2015-04-21

3.  Interhemispheric gene expression differences in the cerebral cortex of humans and macaque monkeys.

Authors:  Gerard Muntané; Gabriel Santpere; Andrey Verendeev; William W Seeley; Bob Jacobs; William D Hopkins; Arcadi Navarro; Chet C Sherwood
Journal:  Brain Struct Funct       Date:  2017-03-19       Impact factor: 3.270

4.  The more you test, the more you find: The smallest P-values become increasingly enriched with real findings as more tests are conducted.

Authors:  Olga A Vsevolozhskaya; Chia-Ling Kuo; Gabriel Ruiz; Luda Diatchenko; Dmitri V Zaykin
Journal:  Genet Epidemiol       Date:  2017-09-14       Impact factor: 2.135

Review 5.  Transdisciplinary approaches enhance the production of translational knowledge.

Authors:  Timothy H Ciesielski; Melinda C Aldrich; Carmen J Marsit; Robert A Hiatt; Scott M Williams
Journal:  Transl Res       Date:  2016-11-10       Impact factor: 7.012

6.  Phenome-Wide Association Studies: Leveraging Comprehensive Phenotypic and Genotypic Data for Discovery.

Authors:  S A Pendergrass; M D Ritchie
Journal:  Curr Genet Med Rep       Date:  2015-06-01

7.  A comparison of two workflows for regulome and transcriptome-based prioritization of genetic variants associated with myocardial mass.

Authors:  Elisabetta Manduchi; Daiane Hemerich; Jessica van Setten; Vinicius Tragante; Magdalena Harakalova; Jiayi Pei; Scott M Williams; Pim van der Harst; Folkert W Asselbergs; Jason H Moore
Journal:  Genet Epidemiol       Date:  2019-05-30       Impact factor: 2.135

8.  Genetic predictors of cue- and stress-induced cigarette craving: an exploratory study.

Authors:  Joel Erblich; Dana H Bovbjerg; George A Diaz
Journal:  Exp Clin Psychopharmacol       Date:  2011-09-12       Impact factor: 3.157

9.  The impact of improved microarray coverage and larger sample sizes on future genome-wide association studies.

Authors:  Karla J Lindquist; Eric Jorgenson; Thomas J Hoffmann; John S Witte
Journal:  Genet Epidemiol       Date:  2013-03-25       Impact factor: 2.135

10.  Cardiovascular and noncardiovascular disease associations with hip fractures.

Authors:  Yariv Gerber; L Joseph Melton; Sheila M McNallan; Ruoxiang Jiang; Susan A Weston; Véronique L Roger
Journal:  Am J Med       Date:  2013-02       Impact factor: 4.965

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