Literature DB >> 21487683

The FARSIGHT trace editor: an open source tool for 3-D inspection and efficient pattern analysis aided editing of automated neuronal reconstructions.

Jonathan Luisi1, Arunachalam Narayanaswamy, Zachary Galbreath, Badrinath Roysam.   

Abstract

Mesh:

Year:  2011        PMID: 21487683     DOI: 10.1007/s12021-011-9115-0

Source DB:  PubMed          Journal:  Neuroinformatics        ISSN: 1539-2791


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  35 in total

1.  The DIADEM metric: comparing multiple reconstructions of the same neuron.

Authors:  Todd A Gillette; Kerry M Brown; Giorgio A Ascoli
Journal:  Neuroinformatics       Date:  2011-09

2.  Whole-body tissue stabilization and selective extractions via tissue-hydrogel hybrids for high-resolution intact circuit mapping and phenotyping.

Authors:  Ken Y Chan; Nicholas C Flytzanis; Bin Yang; Jennifer B Treweek; Benjamin E Deverman; Alon Greenbaum; Antti Lignell; Cheng Xiao; Long Cai; Mark S Ladinsky; Pamela J Bjorkman; Charless C Fowlkes; Viviana Gradinaru
Journal:  Nat Protoc       Date:  2015-10-22       Impact factor: 13.491

3.  Extensible visualization and analysis for multidimensional images using Vaa3D.

Authors:  Hanchuan Peng; Alessandro Bria; Zhi Zhou; Giulio Iannello; Fuhui Long
Journal:  Nat Protoc       Date:  2014-01-02       Impact factor: 13.491

4.  The Filament Editor: an interactive software environment for visualization, proof-editing and analysis of 3D neuron morphology.

Authors:  Vincent J Dercksen; Hans-Christian Hege; Marcel Oberlaender
Journal:  Neuroinformatics       Date:  2014-04

5.  3-D image pre-processing algorithms for improved automated tracing of neuronal arbors.

Authors:  Arunachalam Narayanaswamy; Yu Wang; Badrinath Roysam
Journal:  Neuroinformatics       Date:  2011-09

Review 6.  Neuronal tracing for connectomic studies.

Authors:  Ju Lu
Journal:  Neuroinformatics       Date:  2011-09

7.  A broadly applicable 3-D neuron tracing method based on open-curve snake.

Authors:  Yu Wang; Arunachalam Narayanaswamy; Chia-Ling Tsai; Badrinath Roysam
Journal:  Neuroinformatics       Date:  2011-09

8.  Nanoscale Imaging of Collagen Gels with Focused Ion Beam Milling and Scanning Electron Microscopy.

Authors:  Shawn P Reese; Niloofar Farhang; Randy Poulson; Gennie Parkman; Jeffrey A Weiss
Journal:  Biophys J       Date:  2016-10-18       Impact factor: 4.033

Review 9.  Towards the automatic classification of neurons.

Authors:  Rubén Armañanzas; Giorgio A Ascoli
Journal:  Trends Neurosci       Date:  2015-03-09       Impact factor: 13.837

Review 10.  Neuronal morphology goes digital: a research hub for cellular and system neuroscience.

Authors:  Ruchi Parekh; Giorgio A Ascoli
Journal:  Neuron       Date:  2013-03-20       Impact factor: 17.173

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