Literature DB >> 21479847

Understanding molecular structure from molecular mechanics.

Norman L Allinger1.   

Abstract

Molecular mechanics gives us a well known model of molecular structure. It is less widely recognized that valence bond theory gives us structures which offer a direct interpretation of molecular mechanics formulations and parameters. The electronic effects well-known in physical organic chemistry can be directly interpreted in terms of valence bond structures, and hence quantitatively calculated and understood. The basic theory is outlined in this paper, and examples of the effects, and their interpretation in illustrative examples is presented.

Mesh:

Year:  2011        PMID: 21479847     DOI: 10.1007/s10822-011-9422-4

Source DB:  PubMed          Journal:  J Comput Aided Mol Des        ISSN: 0920-654X            Impact factor:   3.686


  3 in total

1.  Alcohols, ethers, carbohydrates, and related compounds. II. The anomeric effect.

Authors:  Jenn-Huei Lii; Kuo-Hsiang Chen; Kathleen A Durkin; Norman L Allinger
Journal:  J Comput Chem       Date:  2003-09       Impact factor: 3.376

2.  The external-anomeric torsional effect.

Authors:  Jenn-Huei Lii; Kuo-Hsiang Chen; Glenn P Johnson; Alfred D French; Norman L Allinger
Journal:  Carbohydr Res       Date:  2005-04-11       Impact factor: 2.104

3.  A new local density functional for main-group thermochemistry, transition metal bonding, thermochemical kinetics, and noncovalent interactions.

Authors:  Yan Zhao; Donald G Truhlar
Journal:  J Chem Phys       Date:  2006-11-21       Impact factor: 3.488

  3 in total
  4 in total

Review 1.  Biomolecular force fields: where have we been, where are we now, where do we need to go and how do we get there?

Authors:  Pnina Dauber-Osguthorpe; A T Hagler
Journal:  J Comput Aided Mol Des       Date:  2018-11-30       Impact factor: 3.686

2.  Foundations of biomolecular modeling.

Authors:  William L Jorgensen
Journal:  Cell       Date:  2013-12-05       Impact factor: 41.582

3.  The future of molecular dynamics simulations in drug discovery.

Authors:  David W Borhani; David E Shaw
Journal:  J Comput Aided Mol Des       Date:  2011-12-20       Impact factor: 3.686

4.  Graphite, graphene on SiC, and graphene nanoribbons: Calculated images with a numerical FM-AFM.

Authors:  Fabien Castanié; Laurent Nony; Sébastien Gauthier; Xavier Bouju
Journal:  Beilstein J Nanotechnol       Date:  2012-04-02       Impact factor: 3.649

  4 in total

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